data_7B26 # _model_server_result.job_id fUOJHIxEih8Aq1_KitoQHA _model_server_result.datetime_utc '2024-12-16 02:57:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":506}' # _entry.id 7B26 # _exptl.entry_id 7B26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B26 _cell.length_a 166.31 _cell.length_b 54.512 _cell.length_c 70.581 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.comp_id_2 FUC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D FUC 1 D 1 FUC B 509 FUC 4 n D BGC 2 D 2 BGC B 510 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 B CYS 269 1_555 A SG CYS 78 B CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 45 B CYS 273 1_555 A SG CYS 84 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 56 B CYS 284 1_555 A SG CYS 68 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 99 B CYS 327 1_555 A SG CYS 142 B CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 109 B CYS 337 1_555 A SG CYS 148 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 122 B CYS 350 1_555 A SG CYS 132 B CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 163 B CYS 391 1_555 A SG CYS 227 B CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 A SG CYS 167 B CYS 395 1_555 A SG CYS 233 B CYS 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf9 A SG CYS 179 B CYS 407 1_555 A SG CYS 211 B CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 32 A CYS 32 1_555 B SG CYS 56 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 B SG CYS 43 A CYS 43 1_555 B SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf12 B SG CYS 57 A CYS 57 1_555 B SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 B SG CYS 89 A CYS 89 1_555 B SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 B SG CYS 93 A CYS 93 1_555 B SG CYS 133 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 104 A CYS 104 1_555 B SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 C SG CYS 51 C CYS 74 1_555 C SG CYS 179 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 C SG CYS 121 C CYS 144 1_555 C SG CYS 156 C CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A CD1 TRP 32 B TRP 260 1_555 I C1 MAN . B MAN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale2 A CD1 TRP 35 B TRP 263 1_555 J C1 MAN . B MAN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale3 A OG1 THR 44 B THR 272 1_555 D C1 FUC . D FUC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale4 A CD1 TRP 93 B TRP 321 1_555 F C1 MAN . B MAN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale5 A CD1 TRP 96 B TRP 324 1_555 E C1 MAN . B MAN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale6 A CD1 TRP 154 B TRP 382 1_555 G C1 MAN . B MAN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale7 A CD1 TRP 157 B TRP 385 1_555 H C1 MAN . B MAN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale8 A CD1 TRP 160 B TRP 388 1_555 K C1 MAN . B MAN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale9 B CD1 TRP 83 A TRP 83 1_555 L C1 MAN . A MAN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale10 B CD1 TRP 86 A TRP 86 1_555 M C1 MAN . A MAN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale11 D O3 FUC . D FUC 1 1_555 D C1 BGC . D BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 263 n n C1 O1 MAN sing 264 n n C1 O5 MAN sing 265 n n C1 H1 MAN sing 266 n n C2 C3 MAN sing 267 n n C2 O2 MAN sing 268 n n C2 H2 MAN sing 269 n n C3 C4 MAN sing 270 n n C3 O3 MAN sing 271 n n C3 H3 MAN sing 272 n n C4 C5 MAN sing 273 n n C4 O4 MAN sing 274 n n C4 H4 MAN sing 275 n n C5 C6 MAN sing 276 n n C5 O5 MAN sing 277 n n C5 H5 MAN sing 278 n n C6 O6 MAN sing 279 n n C6 H61 MAN sing 280 n n C6 H62 MAN sing 281 n n O1 HO1 MAN sing 282 n n O2 HO2 MAN sing 283 n n O3 HO3 MAN sing 284 n n O4 HO4 MAN sing 285 n n O6 HO6 MAN sing 286 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7B26 _atom_sites.fract_transf_matrix[1][1] 0.006013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MAN B 1 501 501 MAN MAN . F 5 MAN B 1 502 502 MAN MAN . G 5 MAN B 1 503 503 MAN MAN . H 5 MAN B 1 504 504 MAN MAN . I 5 MAN B 1 505 505 MAN MAN . J 5 MAN B 1 506 506 MAN MAN . K 5 MAN B 1 507 508 MAN MAN . L 5 MAN A 1 200 200 MAN MAN . M 5 MAN A 1 201 201 MAN MAN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . J 5 -5.296 1.619 56.031 1 59.34 ? C1 MAN 506 B 1 HETATM 2 C C2 MAN . . . J 5 -6.418 1.891 57.015 1 58.69 ? C2 MAN 506 B 1 HETATM 3 C C3 MAN . . . J 5 -7.423 0.808 56.985 1 72.25 ? C3 MAN 506 B 1 HETATM 4 C C4 MAN . . . J 5 -6.823 -0.571 57.172 1 69.93 ? C4 MAN 506 B 1 HETATM 5 C C5 MAN . . . J 5 -5.585 -0.835 56.322 1 60.45 ? C5 MAN 506 B 1 HETATM 6 C C6 MAN . . . J 5 -6.006 -1.157 54.892 1 71.4 ? C6 MAN 506 B 1 HETATM 7 O O2 MAN . . . J 5 -7.076 3.147 56.699 1 53.16 ? O2 MAN 506 B 1 HETATM 8 O O3 MAN . . . J 5 -8.207 0.872 55.737 1 88.14 ? O3 MAN 506 B 1 HETATM 9 O O4 MAN . . . J 5 -6.468 -0.717 58.535 1 65.57 ? O4 MAN 506 B 1 HETATM 10 O O5 MAN . . . J 5 -4.635 0.298 56.31 1 53.4 ? O5 MAN 506 B 1 HETATM 11 O O6 MAN . . . J 5 -4.933 -1.669 54.202 1 57.92 ? O6 MAN 506 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #