data_7B2L
#
_model_server_result.job_id            G8374jY6ImHERrA3mPAumQ 
_model_server_result.datetime_utc      '2024-10-20 00:29:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7b2l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":302}' 
#
_entry.id    7B2L 
#
_exptl.entry_id    7B2L 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              746.566 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
? 3 IA N N 
? 3 JA N N 
#
_chem_comp.formula           'C25 H49 O19 P3' 
_chem_comp.formula_weight    746.566 
_chem_comp.id                PIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'dioctanoyl l-alpha-phosphatidyl-d-myo-inositol 4,5-diphosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PIO sing 258 n n 
C1 C2 PIO sing 259 n n 
C1 C6 PIO sing 260 n n 
C1 H1 PIO sing 261 n n 
O1 P1 PIO sing 262 n n 
P1 O11 PIO sing 263 n n 
O11 H11 PIO sing 264 n n 
P1 O12 PIO doub 265 n n 
P1 O13 PIO sing 266 n n 
C2 O2 PIO sing 267 n n 
C2 C3 PIO sing 268 n n 
C2 H2 PIO sing 269 n n 
O2 HO2 PIO sing 270 n n 
C3 O3 PIO sing 271 n n 
C3 C4 PIO sing 272 n n 
C3 H3 PIO sing 273 n n 
O3 HO3 PIO sing 274 n n 
C4 O4 PIO sing 275 n n 
C4 C5 PIO sing 276 n n 
C4 H4 PIO sing 277 n n 
O4 P4 PIO sing 278 n n 
P4 O41 PIO sing 279 n n 
O41 H41 PIO sing 280 n n 
P4 O42 PIO doub 281 n n 
P4 O43 PIO sing 282 n n 
O43 H43 PIO sing 283 n n 
C5 O5 PIO sing 284 n n 
C5 C6 PIO sing 285 n n 
C5 H5 PIO sing 286 n n 
O5 P5 PIO sing 287 n n 
P5 O51 PIO sing 288 n n 
O51 H51 PIO sing 289 n n 
P5 O52 PIO sing 290 n n 
O52 H52 PIO sing 291 n n 
P5 O53 PIO doub 292 n n 
C6 O6 PIO sing 293 n n 
C6 H6 PIO sing 294 n n 
O6 HO6 PIO sing 295 n n 
O13 C1C PIO sing 296 n n 
C1A O1A PIO doub 297 n n 
C1A C2A PIO sing 298 n n 
C1A O2C PIO sing 299 n n 
C1B O1B PIO doub 300 n n 
C1B C2B PIO sing 301 n n 
C1B O3C PIO sing 302 n n 
C1C C2C PIO sing 303 n n 
C1C H1C PIO sing 304 n n 
C1C H1CA PIO sing 305 n n 
C2A C3A PIO sing 306 n n 
C2A H2A PIO sing 307 n n 
C2A H2AA PIO sing 308 n n 
C2B C3B PIO sing 309 n n 
C2B H2B PIO sing 310 n n 
C2B H2BA PIO sing 311 n n 
C2C O2C PIO sing 312 n n 
C2C C3C PIO sing 313 n n 
C2C H2C PIO sing 314 n n 
C3A C4A PIO sing 315 n n 
C3A H3A PIO sing 316 n n 
C3A H3AA PIO sing 317 n n 
C3B C4B PIO sing 318 n n 
C3B H3B PIO sing 319 n n 
C3B H3BA PIO sing 320 n n 
C3C O3C PIO sing 321 n n 
C3C H3C PIO sing 322 n n 
C3C H3CA PIO sing 323 n n 
C4A C5A PIO sing 324 n n 
C4A H4A PIO sing 325 n n 
C4A H4AA PIO sing 326 n n 
C4B C5B PIO sing 327 n n 
C4B H4B PIO sing 328 n n 
C4B H4BA PIO sing 329 n n 
C5A C6A PIO sing 330 n n 
C5A H5A PIO sing 331 n n 
C5A H5AA PIO sing 332 n n 
C5B C6B PIO sing 333 n n 
C5B H5B PIO sing 334 n n 
C5B H5BA PIO sing 335 n n 
C6A C7A PIO sing 336 n n 
C6A H6A PIO sing 337 n n 
C6A H6AA PIO sing 338 n n 
C6B C7B PIO sing 339 n n 
C6B H6B PIO sing 340 n n 
C6B H6BA PIO sing 341 n n 
C7A C8A PIO sing 342 n n 
C7A H7A PIO sing 343 n n 
C7A H7AA PIO sing 344 n n 
C7B C8B PIO sing 345 n n 
C7B H7B PIO sing 346 n n 
C7B H7BA PIO sing 347 n n 
C8A H8A PIO sing 348 n n 
C8A H8AA PIO sing 349 n n 
C8A H8AB PIO sing 350 n n 
C8B H8B PIO sing 351 n n 
C8B H8BA PIO sing 352 n n 
C8B H8BB PIO sing 353 n n 
#
_atom_sites.entry_id                     7B2L 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 3 PIO A 1 201 101 PIO 1 . 
R 3 PIO A 1 202 201 PIO 1 . 
S 3 PIO B 1 301 1 PIO 1 . 
T 3 PIO C 1 301 301 PIO 1 . 
U 3 PIO C 1 302 401 PIO 1 . 
V 3 PIO F 1 201 101 PIO 1 . 
W 3 PIO F 1 202 201 PIO 1 . 
X 3 PIO G 1 301 1 PIO 1 . 
Y 3 PIO H 1 301 301 PIO 1 . 
Z 3 PIO H 1 302 401 PIO 1 . 
AA 3 PIO K 1 201 101 PIO 1 . 
BA 3 PIO K 1 202 201 PIO 1 . 
CA 3 PIO L 1 301 1 PIO 1 . 
DA 3 PIO M 1 301 301 PIO 1 . 
EA 3 PIO M 1 302 401 PIO 1 . 
FA 3 PIO P 1 201 101 PIO 1 . 
GA 3 PIO P 1 202 201 PIO 1 . 
HA 3 PIO Q 1 301 1 PIO 1 . 
IA 3 PIO R 1 301 301 PIO 1 . 
JA 3 PIO R 1 302 401 PIO 1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PIO . . . U 3 127.352 152.273 119.128 1 20 ? C1 PIO 302 C 1 
HETATM 2 O O1 PIO . . . U 3 128.403 152.29 120.061 1 20 ? O1 PIO 302 C 1 
HETATM 3 P P1 PIO . . . U 3 129.356 150.97 120.312 1 20 ? P1 PIO 302 C 1 
HETATM 4 C C2 PIO . . . U 3 127.847 151.782 117.76 1 20 ? C2 PIO 302 C 1 
HETATM 5 O O2 PIO . . . U 3 128.405 150.496 117.827 1 20 ? O2 PIO 302 C 1 
HETATM 6 C C3 PIO . . . U 3 128.896 152.754 117.218 1 20 ? C3 PIO 302 C 1 
HETATM 7 O O3 PIO . . . U 3 129.962 152.823 118.129 1 20 ? O3 PIO 302 C 1 
HETATM 8 C C4 PIO . . . U 3 128.313 154.152 117.012 1 20 ? C4 PIO 302 C 1 
HETATM 9 O O4 PIO . . . U 3 128.153 154.34 115.641 1 20 ? O4 PIO 302 C 1 
HETATM 10 P P4 PIO . . . U 3 129.004 155.562 114.975 1 20 ? P4 PIO 302 C 1 
HETATM 11 C C5 PIO . . . U 3 126.943 154.355 117.659 1 20 ? C5 PIO 302 C 1 
HETATM 12 O O5 PIO . . . U 3 126.749 155.734 117.766 1 20 ? O5 PIO 302 C 1 
HETATM 13 P P5 PIO . . . U 3 125.209 156.291 117.703 1 20 ? P5 PIO 302 C 1 
HETATM 14 C C6 PIO . . . U 3 126.823 153.712 119.049 1 20 ? C6 PIO 302 C 1 
HETATM 15 O O6 PIO . . . U 3 125.468 153.705 119.399 1 20 ? O6 PIO 302 C 1 
HETATM 16 O O11 PIO . . . U 3 130.304 151.234 121.453 1 20 ? O11 PIO 302 C 1 
HETATM 17 O O12 PIO . . . U 3 130.208 150.684 118.931 1 20 ? O12 PIO 302 C 1 
HETATM 18 O O13 PIO . . . U 3 128.513 149.761 120.627 1 20 ? O13 PIO 302 C 1 
HETATM 19 O O41 PIO . . . U 3 130.462 155.344 115.248 1 20 ? O41 PIO 302 C 1 
HETATM 20 O O42 PIO . . . U 3 128.783 155.611 113.491 1 20 ? O42 PIO 302 C 1 
HETATM 21 O O43 PIO . . . U 3 128.563 156.853 115.597 1 20 ? O43 PIO 302 C 1 
HETATM 22 O O51 PIO . . . U 3 125.159 157.714 118.187 1 20 ? O51 PIO 302 C 1 
HETATM 23 O O52 PIO . . . U 3 124.355 155.423 118.583 1 20 ? O52 PIO 302 C 1 
HETATM 24 O O53 PIO . . . U 3 124.703 156.239 116.287 1 20 ? O53 PIO 302 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           24 
#