data_7B30 # _model_server_result.job_id HDPnc-eTOZ2xjIMl_GZRbg _model_server_result.datetime_utc '2024-11-21 18:52:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7B30 # _exptl.entry_id 7B30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.957 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(trans-5-amino-1,3-dioxan-2-yl)methyl]-6-[2-chloro-4-(6-methylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7(8H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.921 _cell.angle_gamma 90 _cell.entry_id 7B30 _cell.length_a 98.997 _cell.length_b 58.846 _cell.length_c 61.843 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H25 Cl N6 O3' _chem_comp.formula_weight 492.957 _chem_comp.id 59T _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(trans-5-amino-1,3-dioxan-2-yl)methyl]-6-[2-chloro-4-(6-methylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7(8H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C4 59T doub 1 n y N3 C2 59T sing 2 n y C4 C5 59T sing 3 n y C4 C8 59T sing 4 n n C5 C6 59T doub 5 n y C6 C7 59T sing 6 n y C7 C2 59T doub 7 n y C8 C13 59T doub 8 n y C8 C9 59T sing 9 n y C10 C9 59T doub 10 n y C10 C11 59T sing 11 n y C10 CL1 59T sing 12 n n C13 C12 59T sing 13 n y C15 C14 59T sing 14 n n C15 O16 59T doub 15 n n C15 N17 59T sing 16 n n C20 N19 59T doub 17 n y C20 N21 59T sing 18 n y C20 N25 59T sing 19 n n C22 N21 59T doub 20 n y C22 C23 59T sing 21 n y C24 C14 59T doub 22 n n C24 C23 59T sing 23 n n C26 N25 59T sing 24 n n C28 O30 59T sing 25 n n C28 O35 59T sing 26 n n C1 C2 59T sing 27 n n C11 C12 59T doub 28 n y C11 C14 59T sing 29 n n N17 C18 59T sing 30 n n N17 C27 59T sing 31 n n C18 N19 59T sing 32 n y C18 C23 59T doub 33 n y O30 C31 59T sing 34 n n C31 C32 59T sing 35 n n C32 C34 59T sing 36 n n C32 N36 59T sing 37 n n C34 O35 59T sing 38 n n C27 C28 59T sing 39 n n C5 H1 59T sing 40 n n C6 H2 59T sing 41 n n C7 H3 59T sing 42 n n C13 H4 59T sing 43 n n C22 H5 59T sing 44 n n C24 H6 59T sing 45 n n C26 H7 59T sing 46 n n C26 H8 59T sing 47 n n C26 H9 59T sing 48 n n C28 H10 59T sing 49 n n C1 H11 59T sing 50 n n C1 H12 59T sing 51 n n C1 H13 59T sing 52 n n C9 H14 59T sing 53 n n C12 H15 59T sing 54 n n N25 H16 59T sing 55 n n C27 H17 59T sing 56 n n C27 H18 59T sing 57 n n C31 H19 59T sing 58 n n C31 H20 59T sing 59 n n C32 H21 59T sing 60 n n C34 H22 59T sing 61 n n C34 H23 59T sing 62 n n N36 H24 59T sing 63 n n N36 H25 59T sing 64 n n # _atom_sites.entry_id 7B30 _atom_sites.fract_transf_matrix[1][1] 0.010101 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000515 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 59T A 1 401 313 59T XXX . C 3 HOH A 1 501 8 HOH HOH . C 3 HOH A 2 502 12 HOH HOH . C 3 HOH A 3 503 50 HOH HOH . C 3 HOH A 4 504 32 HOH HOH . C 3 HOH A 5 505 19 HOH HOH . C 3 HOH A 6 506 94 HOH HOH . C 3 HOH A 7 507 37 HOH HOH . C 3 HOH A 8 508 7 HOH HOH . C 3 HOH A 9 509 104 HOH HOH . C 3 HOH A 10 510 56 HOH HOH . C 3 HOH A 11 511 14 HOH HOH . C 3 HOH A 12 512 84 HOH HOH . C 3 HOH A 13 513 62 HOH HOH . C 3 HOH A 14 514 3 HOH HOH . C 3 HOH A 15 515 49 HOH HOH . C 3 HOH A 16 516 45 HOH HOH . C 3 HOH A 17 517 53 HOH HOH . C 3 HOH A 18 518 96 HOH HOH . C 3 HOH A 19 519 91 HOH HOH . C 3 HOH A 20 520 2 HOH HOH . C 3 HOH A 21 521 34 HOH HOH . C 3 HOH A 22 522 98 HOH HOH . C 3 HOH A 23 523 35 HOH HOH . C 3 HOH A 24 524 17 HOH HOH . C 3 HOH A 25 525 1 HOH HOH . C 3 HOH A 26 526 20 HOH HOH . C 3 HOH A 27 527 28 HOH HOH . C 3 HOH A 28 528 13 HOH HOH . C 3 HOH A 29 529 51 HOH HOH . C 3 HOH A 30 530 23 HOH HOH . C 3 HOH A 31 531 72 HOH HOH . C 3 HOH A 32 532 105 HOH HOH . C 3 HOH A 33 533 6 HOH HOH . C 3 HOH A 34 534 102 HOH HOH . C 3 HOH A 35 535 43 HOH HOH . C 3 HOH A 36 536 25 HOH HOH . C 3 HOH A 37 537 27 HOH HOH . C 3 HOH A 38 538 63 HOH HOH . C 3 HOH A 39 539 70 HOH HOH . C 3 HOH A 40 540 16 HOH HOH . C 3 HOH A 41 541 42 HOH HOH . C 3 HOH A 42 542 10 HOH HOH . C 3 HOH A 43 543 69 HOH HOH . C 3 HOH A 44 544 74 HOH HOH . C 3 HOH A 45 545 40 HOH HOH . C 3 HOH A 46 546 99 HOH HOH . C 3 HOH A 47 547 31 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 107 HOH HOH . C 3 HOH A 50 550 29 HOH HOH . C 3 HOH A 51 551 9 HOH HOH . C 3 HOH A 52 552 52 HOH HOH . C 3 HOH A 53 553 64 HOH HOH . C 3 HOH A 54 554 61 HOH HOH . C 3 HOH A 55 555 21 HOH HOH . C 3 HOH A 56 556 55 HOH HOH . C 3 HOH A 57 557 100 HOH HOH . C 3 HOH A 58 558 46 HOH HOH . C 3 HOH A 59 559 36 HOH HOH . C 3 HOH A 60 560 67 HOH HOH . C 3 HOH A 61 561 22 HOH HOH . C 3 HOH A 62 562 11 HOH HOH . C 3 HOH A 63 563 15 HOH HOH . C 3 HOH A 64 564 38 HOH HOH . C 3 HOH A 65 565 54 HOH HOH . C 3 HOH A 66 566 24 HOH HOH . C 3 HOH A 67 567 5 HOH HOH . C 3 HOH A 68 568 41 HOH HOH . C 3 HOH A 69 569 68 HOH HOH . C 3 HOH A 70 570 78 HOH HOH . C 3 HOH A 71 571 83 HOH HOH . C 3 HOH A 72 572 95 HOH HOH . C 3 HOH A 73 573 101 HOH HOH . C 3 HOH A 74 574 106 HOH HOH . C 3 HOH A 75 575 89 HOH HOH . C 3 HOH A 76 576 66 HOH HOH . C 3 HOH A 77 577 47 HOH HOH . C 3 HOH A 78 578 60 HOH HOH . C 3 HOH A 79 579 86 HOH HOH . C 3 HOH A 80 580 33 HOH HOH . C 3 HOH A 81 581 4 HOH HOH . C 3 HOH A 82 582 103 HOH HOH . C 3 HOH A 83 583 88 HOH HOH . C 3 HOH A 84 584 85 HOH HOH . C 3 HOH A 85 585 92 HOH HOH . C 3 HOH A 86 586 87 HOH HOH . C 3 HOH A 87 587 39 HOH HOH . C 3 HOH A 88 588 26 HOH HOH . C 3 HOH A 89 589 76 HOH HOH . C 3 HOH A 90 590 82 HOH HOH . C 3 HOH A 91 591 97 HOH HOH . C 3 HOH A 92 592 79 HOH HOH . C 3 HOH A 93 593 30 HOH HOH . C 3 HOH A 94 594 59 HOH HOH . C 3 HOH A 95 595 93 HOH HOH . C 3 HOH A 96 596 80 HOH HOH . C 3 HOH A 97 597 81 HOH HOH . C 3 HOH A 98 598 58 HOH HOH . C 3 HOH A 99 599 65 HOH HOH . C 3 HOH A 100 600 71 HOH HOH . C 3 HOH A 101 601 18 HOH HOH . C 3 HOH A 102 602 57 HOH HOH . C 3 HOH A 103 603 73 HOH HOH . C 3 HOH A 104 604 75 HOH HOH . C 3 HOH A 105 605 77 HOH HOH . C 3 HOH A 106 606 90 HOH HOH . C 3 HOH A 107 607 108 HOH HOH . C 3 HOH A 108 608 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 59T . . . B 2 -29.974 -5.499 8.96 1 43.3 ? N3 59T 401 A 1 HETATM 2 C C4 59T . . . B 2 -29.888 -6.352 9.999 1 39.18 ? C4 59T 401 A 1 HETATM 3 C C5 59T . . . B 2 -29.271 -7.593 9.895 1 44.74 ? C5 59T 401 A 1 HETATM 4 C C6 59T . . . B 2 -28.708 -7.957 8.687 1 45.29 ? C6 59T 401 A 1 HETATM 5 C C7 59T . . . B 2 -28.784 -7.086 7.62 1 45.91 ? C7 59T 401 A 1 HETATM 6 C C8 59T . . . B 2 -30.462 -5.869 11.279 1 41.52 ? C8 59T 401 A 1 HETATM 7 C C10 59T . . . B 2 -32.337 -5.623 12.766 1 44.59 ? C10 59T 401 A 1 HETATM 8 C C13 59T . . . B 2 -29.681 -5.199 12.214 1 45.47 ? C13 59T 401 A 1 HETATM 9 C C15 59T . . . B 2 -32.652 -2.916 14.789 1 38.4 ? C15 59T 401 A 1 HETATM 10 C C20 59T . . . B 2 -33.875 -3.027 19.331 1 32.16 ? C20 59T 401 A 1 HETATM 11 C C22 59T . . . B 2 -33.094 -4.973 18.463 1 31.48 ? C22 59T 401 A 1 HETATM 12 C C24 59T . . . B 2 -32.31 -4.959 16.053 1 32.92 ? C24 59T 401 A 1 HETATM 13 C C26 59T . . . B 2 -34.654 -0.942 20.334 1 36.55 ? C26 59T 401 A 1 HETATM 14 C C28 59T . . . B 2 -32.082 -0.148 15.604 1 39.25 ? C28 59T 401 A 1 HETATM 15 C C1 59T . . . B 2 -29.614 -4.916 6.638 1 47.37 ? C1 59T 401 A 1 HETATM 16 C C2 59T . . . B 2 -29.434 -5.866 7.782 1 45.37 ? C2 59T 401 A 1 HETATM 17 C C9 59T . . . B 2 -31.806 -6.074 11.572 1 39.41 ? C9 59T 401 A 1 HETATM 18 C C11 59T . . . B 2 -31.57 -4.917 13.684 1 37.75 ? C11 59T 401 A 1 HETATM 19 C C12 59T . . . B 2 -30.222 -4.73 13.398 1 46.41 ? C12 59T 401 A 1 HETATM 20 C C14 59T . . . B 2 -32.172 -4.288 14.888 1 35.56 ? C14 59T 401 A 1 HETATM 21 O O16 59T . . . B 2 -32.753 -2.302 13.735 1 36.28 ? O16 59T 401 A 1 HETATM 22 N N17 59T . . . B 2 -33.047 -2.308 15.964 1 34.82 ? N17 59T 401 A 1 HETATM 23 C C18 59T . . . B 2 -33.177 -2.987 17.166 1 33.84 ? C18 59T 401 A 1 HETATM 24 N N19 59T . . . B 2 -33.678 -2.317 18.209 1 34.41 ? N19 59T 401 A 1 HETATM 25 N N21 59T . . . B 2 -33.624 -4.328 19.511 1 33.78 ? N21 59T 401 A 1 HETATM 26 C C23 59T . . . B 2 -32.843 -4.357 17.233 1 32.99 ? C23 59T 401 A 1 HETATM 27 N N25 59T . . . B 2 -34.345 -2.354 20.387 1 33.76 ? N25 59T 401 A 1 HETATM 28 C C27 59T . . . B 2 -33.376 -0.878 15.913 1 35.29 ? C27 59T 401 A 1 HETATM 29 O O30 59T . . . B 2 -32.325 1.194 15.258 1 40.45 ? O30 59T 401 A 1 HETATM 30 C C31 59T . . . B 2 -31.12 1.855 14.85 1 44.9 ? C31 59T 401 A 1 HETATM 31 C C32 59T . . . B 2 -30.05 1.771 15.934 1 40.54 ? C32 59T 401 A 1 HETATM 32 C C34 59T . . . B 2 -29.951 0.349 16.476 1 34.63 ? C34 59T 401 A 1 HETATM 33 O O35 59T . . . B 2 -31.24 -0.218 16.741 1 37.44 ? O35 59T 401 A 1 HETATM 34 N N36 59T . . . B 2 -28.752 2.197 15.399 1 40.47 ? N36 59T 401 A 1 HETATM 35 CL CL1 59T . . . B 2 -33.971 -6.051 13.153 1 46.98 ? CL1 59T 401 A 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #