data_7B31 # _model_server_result.job_id AjVPbFWHmVs1QvlyvSUnCg _model_server_result.datetime_utc '2024-11-15 08:16:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7B31 # _exptl.entry_id 7B31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.933 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1-[(5-azanyl-1,3-dioxan-2-yl)methyl]-3-[2-chloranyl-4-(3-fluoranylpyridin-2-yl)phenyl]-7-(methylamino)-1,6-naphthyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.517 _cell.angle_gamma 90 _cell.entry_id 7B31 _cell.length_a 99.429 _cell.length_b 59.068 _cell.length_c 61.728 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H23 Cl F N5 O3' _chem_comp.formula_weight 495.933 _chem_comp.id SQ8 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(5-azanyl-1,3-dioxan-2-yl)methyl]-3-[2-chloranyl-4-(3-fluoranylpyridin-2-yl)phenyl]-7-(methylamino)-1,6-naphthyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 SQ8 doub 290 n y C8 C9 SQ8 sing 291 n y C7 N SQ8 sing 292 n y C9 C10 SQ8 doub 293 n y N C6 SQ8 doub 294 n y C10 C6 SQ8 sing 295 n y C10 F SQ8 sing 296 n n C6 C5 SQ8 sing 297 n n C5 C4 SQ8 doub 298 n y C5 C11 SQ8 sing 299 n y C4 C3 SQ8 sing 300 n y C11 C12 SQ8 doub 301 n y C3 CL SQ8 sing 302 n n C3 C2 SQ8 doub 303 n y C12 C2 SQ8 sing 304 n y C2 C1 SQ8 sing 305 n n O C SQ8 doub 306 n n C C1 SQ8 sing 307 n n C N1 SQ8 sing 308 n n C1 C13 SQ8 doub 309 n n C16 O1 SQ8 sing 310 n n C16 C17 SQ8 sing 311 n n O1 C15 SQ8 sing 312 n n N2 C17 SQ8 sing 313 n n C15 C14 SQ8 sing 314 n n C15 O2 SQ8 sing 315 n n C14 N1 SQ8 sing 316 n n N1 C19 SQ8 sing 317 n n C17 C18 SQ8 sing 318 n n C13 C20 SQ8 sing 319 n n C18 O2 SQ8 sing 320 n n C19 C20 SQ8 doub 321 n y C19 C24 SQ8 sing 322 n y C20 C21 SQ8 sing 323 n y C24 C22 SQ8 doub 324 n y C21 N3 SQ8 doub 325 n y C22 N3 SQ8 sing 326 n y C22 N4 SQ8 sing 327 n n N4 C23 SQ8 sing 328 n n C21 H1 SQ8 sing 329 n n C23 H2 SQ8 sing 330 n n C23 H3 SQ8 sing 331 n n C23 H4 SQ8 sing 332 n n C24 H5 SQ8 sing 333 n n N4 H6 SQ8 sing 334 n n C17 H7 SQ8 sing 335 n n C12 H8 SQ8 sing 336 n n C11 H9 SQ8 sing 337 n n C13 H10 SQ8 sing 338 n n C14 H11 SQ8 sing 339 n n C14 H12 SQ8 sing 340 n n C15 H13 SQ8 sing 341 n n C16 H14 SQ8 sing 342 n n C16 H15 SQ8 sing 343 n n C9 H16 SQ8 sing 344 n n C8 H17 SQ8 sing 345 n n C7 H18 SQ8 sing 346 n n C4 H19 SQ8 sing 347 n n N2 H20 SQ8 sing 348 n n N2 H21 SQ8 sing 349 n n C18 H23 SQ8 sing 350 n n C18 H24 SQ8 sing 351 n n # _atom_sites.entry_id 7B31 _atom_sites.fract_transf_matrix[1][1] 0.010057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000618 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SQ8 A 1 401 401 SQ8 MR9 . C 3 HOH A 1 501 113 HOH HOH . C 3 HOH A 2 502 61 HOH HOH . C 3 HOH A 3 503 56 HOH HOH . C 3 HOH A 4 504 26 HOH HOH . C 3 HOH A 5 505 60 HOH HOH . C 3 HOH A 6 506 111 HOH HOH . C 3 HOH A 7 507 93 HOH HOH . C 3 HOH A 8 508 72 HOH HOH . C 3 HOH A 9 509 98 HOH HOH . C 3 HOH A 10 510 91 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 59 HOH HOH . C 3 HOH A 13 513 9 HOH HOH . C 3 HOH A 14 514 106 HOH HOH . C 3 HOH A 15 515 12 HOH HOH . C 3 HOH A 16 516 8 HOH HOH . C 3 HOH A 17 517 104 HOH HOH . C 3 HOH A 18 518 112 HOH HOH . C 3 HOH A 19 519 83 HOH HOH . C 3 HOH A 20 520 41 HOH HOH . C 3 HOH A 21 521 4 HOH HOH . C 3 HOH A 22 522 37 HOH HOH . C 3 HOH A 23 523 64 HOH HOH . C 3 HOH A 24 524 44 HOH HOH . C 3 HOH A 25 525 10 HOH HOH . C 3 HOH A 26 526 94 HOH HOH . C 3 HOH A 27 527 81 HOH HOH . C 3 HOH A 28 528 128 HOH HOH . C 3 HOH A 29 529 105 HOH HOH . C 3 HOH A 30 530 28 HOH HOH . C 3 HOH A 31 531 49 HOH HOH . C 3 HOH A 32 532 125 HOH HOH . C 3 HOH A 33 533 24 HOH HOH . C 3 HOH A 34 534 51 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 43 HOH HOH . C 3 HOH A 37 537 67 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 17 HOH HOH . C 3 HOH A 40 540 27 HOH HOH . C 3 HOH A 41 541 36 HOH HOH . C 3 HOH A 42 542 120 HOH HOH . C 3 HOH A 43 543 100 HOH HOH . C 3 HOH A 44 544 40 HOH HOH . C 3 HOH A 45 545 6 HOH HOH . C 3 HOH A 46 546 103 HOH HOH . C 3 HOH A 47 547 21 HOH HOH . C 3 HOH A 48 548 92 HOH HOH . C 3 HOH A 49 549 84 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 18 HOH HOH . C 3 HOH A 52 552 29 HOH HOH . C 3 HOH A 53 553 15 HOH HOH . C 3 HOH A 54 554 5 HOH HOH . C 3 HOH A 55 555 66 HOH HOH . C 3 HOH A 56 556 102 HOH HOH . C 3 HOH A 57 557 69 HOH HOH . C 3 HOH A 58 558 16 HOH HOH . C 3 HOH A 59 559 34 HOH HOH . C 3 HOH A 60 560 47 HOH HOH . C 3 HOH A 61 561 90 HOH HOH . C 3 HOH A 62 562 62 HOH HOH . C 3 HOH A 63 563 73 HOH HOH . C 3 HOH A 64 564 78 HOH HOH . C 3 HOH A 65 565 7 HOH HOH . C 3 HOH A 66 566 46 HOH HOH . C 3 HOH A 67 567 33 HOH HOH . C 3 HOH A 68 568 95 HOH HOH . C 3 HOH A 69 569 30 HOH HOH . C 3 HOH A 70 570 48 HOH HOH . C 3 HOH A 71 571 58 HOH HOH . C 3 HOH A 72 572 127 HOH HOH . C 3 HOH A 73 573 39 HOH HOH . C 3 HOH A 74 574 19 HOH HOH . C 3 HOH A 75 575 117 HOH HOH . C 3 HOH A 76 576 82 HOH HOH . C 3 HOH A 77 577 75 HOH HOH . C 3 HOH A 78 578 23 HOH HOH . C 3 HOH A 79 579 2 HOH HOH . C 3 HOH A 80 580 107 HOH HOH . C 3 HOH A 81 581 99 HOH HOH . C 3 HOH A 82 582 57 HOH HOH . C 3 HOH A 83 583 54 HOH HOH . C 3 HOH A 84 584 1 HOH HOH . C 3 HOH A 85 585 31 HOH HOH . C 3 HOH A 86 586 55 HOH HOH . C 3 HOH A 87 587 14 HOH HOH . C 3 HOH A 88 588 114 HOH HOH . C 3 HOH A 89 589 65 HOH HOH . C 3 HOH A 90 590 52 HOH HOH . C 3 HOH A 91 591 42 HOH HOH . C 3 HOH A 92 592 22 HOH HOH . C 3 HOH A 93 593 76 HOH HOH . C 3 HOH A 94 594 71 HOH HOH . C 3 HOH A 95 595 68 HOH HOH . C 3 HOH A 96 596 13 HOH HOH . C 3 HOH A 97 597 20 HOH HOH . C 3 HOH A 98 598 79 HOH HOH . C 3 HOH A 99 599 110 HOH HOH . C 3 HOH A 100 600 3 HOH HOH . C 3 HOH A 101 601 96 HOH HOH . C 3 HOH A 102 602 80 HOH HOH . C 3 HOH A 103 603 121 HOH HOH . C 3 HOH A 104 604 32 HOH HOH . C 3 HOH A 105 605 123 HOH HOH . C 3 HOH A 106 606 122 HOH HOH . C 3 HOH A 107 607 109 HOH HOH . C 3 HOH A 108 608 87 HOH HOH . C 3 HOH A 109 609 89 HOH HOH . C 3 HOH A 110 610 124 HOH HOH . C 3 HOH A 111 611 115 HOH HOH . C 3 HOH A 112 612 108 HOH HOH . C 3 HOH A 113 613 119 HOH HOH . C 3 HOH A 114 614 74 HOH HOH . C 3 HOH A 115 615 77 HOH HOH . C 3 HOH A 116 616 101 HOH HOH . C 3 HOH A 117 617 25 HOH HOH . C 3 HOH A 118 618 116 HOH HOH . C 3 HOH A 119 619 53 HOH HOH . C 3 HOH A 120 620 86 HOH HOH . C 3 HOH A 121 621 88 HOH HOH . C 3 HOH A 122 622 126 HOH HOH . C 3 HOH A 123 623 70 HOH HOH . C 3 HOH A 124 624 63 HOH HOH . C 3 HOH A 125 625 45 HOH HOH . C 3 HOH A 126 626 85 HOH HOH . C 3 HOH A 127 627 118 HOH HOH . C 3 HOH A 128 628 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 SQ8 . . . B 2 -33.253 -4.427 16.933 1 24.86 ? C20 SQ8 401 A 1 HETATM 2 C C21 SQ8 . . . B 2 -33.473 -5.073 18.155 1 28.12 ? C21 SQ8 401 A 1 HETATM 3 C C22 SQ8 . . . B 2 -34.238 -3.162 19.17 1 28.31 ? C22 SQ8 401 A 1 HETATM 4 C C23 SQ8 . . . B 2 -35.065 -1.135 20.295 1 31.59 ? C23 SQ8 401 A 1 HETATM 5 C C24 SQ8 . . . B 2 -34.054 -2.427 18.013 1 21.77 ? C24 SQ8 401 A 1 HETATM 6 C C19 SQ8 . . . B 2 -33.565 -3.062 16.887 1 25.95 ? C19 SQ8 401 A 1 HETATM 7 N N4 SQ8 . . . B 2 -34.719 -2.541 20.279 1 25.3 ? N4 SQ8 401 A 1 HETATM 8 C C17 SQ8 . . . B 2 -30.364 1.734 15.751 1 31.11 ? C17 SQ8 401 A 1 HETATM 9 O O2 SQ8 . . . B 2 -31.606 -0.201 16.572 1 32 ? O2 SQ8 401 A 1 HETATM 10 C C12 SQ8 . . . B 2 -30.7 -4.569 12.968 1 35.47 ? C12 SQ8 401 A 1 HETATM 11 C C11 SQ8 . . . B 2 -30.166 -5.022 11.777 1 30.2 ? C11 SQ8 401 A 1 HETATM 12 C C13 SQ8 . . . B 2 -32.702 -5.045 15.763 1 24.07 ? C13 SQ8 401 A 1 HETATM 13 C C14 SQ8 . . . B 2 -33.671 -0.937 15.611 1 24.92 ? C14 SQ8 401 A 1 HETATM 14 C C15 SQ8 . . . B 2 -32.385 -0.163 15.393 1 25.29 ? C15 SQ8 401 A 1 HETATM 15 C C16 SQ8 . . . B 2 -31.402 1.819 14.638 1 29.75 ? C16 SQ8 401 A 1 HETATM 16 C C10 SQ8 . . . B 2 -29.876 -7.774 9.615 1 34.78 ? C10 SQ8 401 A 1 HETATM 17 O O1 SQ8 . . . B 2 -32.623 1.151 14.987 1 27.24 ? O1 SQ8 401 A 1 HETATM 18 C C9 SQ8 . . . B 2 -29.242 -8.206 8.475 1 35.41 ? C9 SQ8 401 A 1 HETATM 19 N N3 SQ8 . . . B 2 -33.966 -4.468 19.248 1 25.66 ? N3 SQ8 401 A 1 HETATM 20 C C8 SQ8 . . . B 2 -29.006 -7.29 7.465 1 33.66 ? C8 SQ8 401 A 1 HETATM 21 C C7 SQ8 . . . B 2 -29.412 -5.983 7.643 1 35.98 ? C7 SQ8 401 A 1 HETATM 22 C C6 SQ8 . . . B 2 -30.241 -6.44 9.722 1 29.82 ? C6 SQ8 401 A 1 HETATM 23 C C5 SQ8 . . . B 2 -30.863 -5.907 10.965 1 30.42 ? C5 SQ8 401 A 1 HETATM 24 C C2 SQ8 . . . B 2 -31.967 -4.974 13.381 1 28.81 ? C2 SQ8 401 A 1 HETATM 25 N N1 SQ8 . . . B 2 -33.397 -2.373 15.686 1 25.16 ? N1 SQ8 401 A 1 HETATM 26 C C3 SQ8 . . . B 2 -32.669 -5.853 12.559 1 32.55 ? C3 SQ8 401 A 1 HETATM 27 C C4 SQ8 . . . B 2 -32.132 -6.316 11.371 1 30.28 ? C4 SQ8 401 A 1 HETATM 28 N N2 SQ8 . . . B 2 -29.052 2.121 15.217 1 28.05 ? N2 SQ8 401 A 1 HETATM 29 C C1 SQ8 . . . B 2 -32.549 -4.364 14.603 1 25.79 ? C1 SQ8 401 A 1 HETATM 30 C C18 SQ8 . . . B 2 -30.296 0.334 16.347 1 28.05 ? C18 SQ8 401 A 1 HETATM 31 N N SQ8 . . . B 2 -30.023 -5.539 8.751 1 35.39 ? N SQ8 401 A 1 HETATM 32 C C SQ8 . . . B 2 -32.969 -2.975 14.528 1 25.82 ? C SQ8 401 A 1 HETATM 33 O O SQ8 . . . B 2 -32.953 -2.321 13.492 1 26.02 ? O SQ8 401 A 1 HETATM 34 F F SQ8 . . . B 2 -30.15 -8.67 10.589 1 39.84 ? F SQ8 401 A 1 HETATM 35 CL CL SQ8 . . . B 2 -34.258 -6.403 12.997 1 32.94 ? CL SQ8 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #