data_7B34 # _model_server_result.job_id AHPLf6KfWfa2QQOVSBi2ug _model_server_result.datetime_utc '2024-11-15 09:20:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":608}' # _entry.id 7B34 # _exptl.entry_id 7B34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.948 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(5-azanyl-1,3-dioxan-2-yl)methyl]-6-[2-chloranyl-4-(3-fluoranyl-6-methyl-pyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.05 _cell.angle_gamma 90 _cell.entry_id 7B34 _cell.length_a 99.262 _cell.length_b 59.067 _cell.length_c 61.795 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H24 Cl F N6 O3' _chem_comp.formula_weight 510.948 _chem_comp.id SQK _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(5-azanyl-1,3-dioxan-2-yl)methyl]-6-[2-chloranyl-4-(3-fluoranyl-6-methyl-pyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 SQK sing 299 n n C14 C15 SQK doub 300 n y C14 C13 SQK sing 301 n y C15 N3 SQK sing 302 n y C13 C12 SQK doub 303 n y N3 C11 SQK doub 304 n y C12 C11 SQK sing 305 n y C12 F SQK sing 306 n n C11 C10 SQK sing 307 n n C10 C9 SQK doub 308 n y C10 C17 SQK sing 309 n y C9 C8 SQK sing 310 n y C17 C18 SQK doub 311 n y C8 CL SQK sing 312 n n C8 C7 SQK doub 313 n y C18 C7 SQK sing 314 n y C7 C6 SQK sing 315 n n O C19 SQK doub 316 n n C19 C6 SQK sing 317 n n C19 N4 SQK sing 318 n n C6 C5 SQK doub 319 n n C24 O2 SQK sing 320 n n C24 C23 SQK sing 321 n n O2 C21 SQK sing 322 n n N5 C23 SQK sing 323 n n C21 C20 SQK sing 324 n n C21 O1 SQK sing 325 n n C5 C4 SQK sing 326 n n N4 C20 SQK sing 327 n n N4 C3 SQK sing 328 n n C23 C22 SQK sing 329 n n C22 O1 SQK sing 330 n n C3 C4 SQK doub 331 n y C3 N2 SQK sing 332 n y C4 C2 SQK sing 333 n y N2 C1 SQK doub 334 n y C2 N1 SQK doub 335 n y C1 N1 SQK sing 336 n y C1 N SQK sing 337 n n N C SQK sing 338 n n C2 H1 SQK sing 339 n n C5 H2 SQK sing 340 n n C9 H3 SQK sing 341 n n N H4 SQK sing 342 n n C H5 SQK sing 343 n n C H6 SQK sing 344 n n C H7 SQK sing 345 n n C13 H8 SQK sing 346 n n C14 H9 SQK sing 347 n n C16 H10 SQK sing 348 n n C16 H11 SQK sing 349 n n C16 H12 SQK sing 350 n n C17 H13 SQK sing 351 n n C18 H14 SQK sing 352 n n C20 H15 SQK sing 353 n n C20 H16 SQK sing 354 n n C21 H17 SQK sing 355 n n C22 H18 SQK sing 356 n n C22 H19 SQK sing 357 n n C23 H20 SQK sing 358 n n C24 H21 SQK sing 359 n n C24 H22 SQK sing 360 n n N5 H23 SQK sing 361 n n N5 H24 SQK sing 362 n n # _atom_sites.entry_id 7B34 _atom_sites.fract_transf_matrix[1][1] 0.010074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000537 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 601 601 EDO EDO . C 2 EDO A 1 602 701 EDO EDO . D 2 EDO A 1 603 801 EDO EDO . E 2 EDO A 1 604 901 EDO EDO . F 2 EDO A 1 605 1101 EDO EDO . G 2 EDO A 1 606 1201 EDO EDO . H 2 EDO A 1 607 1301 EDO EDO . I 3 SQK A 1 608 1302 SQK M12 . J 4 HOH A 1 701 3 HOH HOH . J 4 HOH A 2 702 33 HOH HOH . J 4 HOH A 3 703 38 HOH HOH . J 4 HOH A 4 704 15 HOH HOH . J 4 HOH A 5 705 53 HOH HOH . J 4 HOH A 6 706 19 HOH HOH . J 4 HOH A 7 707 34 HOH HOH . J 4 HOH A 8 708 28 HOH HOH . J 4 HOH A 9 709 7 HOH HOH . J 4 HOH A 10 710 14 HOH HOH . J 4 HOH A 11 711 37 HOH HOH . J 4 HOH A 12 712 39 HOH HOH . J 4 HOH A 13 713 60 HOH HOH . J 4 HOH A 14 714 35 HOH HOH . J 4 HOH A 15 715 43 HOH HOH . J 4 HOH A 16 716 69 HOH HOH . J 4 HOH A 17 717 55 HOH HOH . J 4 HOH A 18 718 32 HOH HOH . J 4 HOH A 19 719 30 HOH HOH . J 4 HOH A 20 720 40 HOH HOH . J 4 HOH A 21 721 29 HOH HOH . J 4 HOH A 22 722 5 HOH HOH . J 4 HOH A 23 723 52 HOH HOH . J 4 HOH A 24 724 24 HOH HOH . J 4 HOH A 25 725 45 HOH HOH . J 4 HOH A 26 726 11 HOH HOH . J 4 HOH A 27 727 50 HOH HOH . J 4 HOH A 28 728 23 HOH HOH . J 4 HOH A 29 729 44 HOH HOH . J 4 HOH A 30 730 4 HOH HOH . J 4 HOH A 31 731 20 HOH HOH . J 4 HOH A 32 732 59 HOH HOH . J 4 HOH A 33 733 12 HOH HOH . J 4 HOH A 34 734 27 HOH HOH . J 4 HOH A 35 735 2 HOH HOH . J 4 HOH A 36 736 41 HOH HOH . J 4 HOH A 37 737 8 HOH HOH . J 4 HOH A 38 738 56 HOH HOH . J 4 HOH A 39 739 6 HOH HOH . J 4 HOH A 40 740 65 HOH HOH . J 4 HOH A 41 741 66 HOH HOH . J 4 HOH A 42 742 10 HOH HOH . J 4 HOH A 43 743 9 HOH HOH . J 4 HOH A 44 744 21 HOH HOH . J 4 HOH A 45 745 26 HOH HOH . J 4 HOH A 46 746 13 HOH HOH . J 4 HOH A 47 747 17 HOH HOH . J 4 HOH A 48 748 64 HOH HOH . J 4 HOH A 49 749 25 HOH HOH . J 4 HOH A 50 750 63 HOH HOH . J 4 HOH A 51 751 46 HOH HOH . J 4 HOH A 52 752 68 HOH HOH . J 4 HOH A 53 753 18 HOH HOH . J 4 HOH A 54 754 48 HOH HOH . J 4 HOH A 55 755 70 HOH HOH . J 4 HOH A 56 756 49 HOH HOH . J 4 HOH A 57 757 31 HOH HOH . J 4 HOH A 58 758 58 HOH HOH . J 4 HOH A 59 759 42 HOH HOH . J 4 HOH A 60 760 61 HOH HOH . J 4 HOH A 61 761 16 HOH HOH . J 4 HOH A 62 762 57 HOH HOH . J 4 HOH A 63 763 51 HOH HOH . J 4 HOH A 64 764 62 HOH HOH . J 4 HOH A 65 765 67 HOH HOH . J 4 HOH A 66 766 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SQK . . . I 3 -34.048 -3.181 19.166 1 27.75 ? C1 SQK 608 A 1 HETATM 2 O O1 SQK . . . I 3 -31.443 -0.121 16.745 1 34.94 ? O1 SQK 608 A 1 HETATM 3 C C2 SQK . . . I 3 -33.305 -5.101 18.2 1 30 ? C2 SQK 608 A 1 HETATM 4 C C3 SQK . . . I 3 -33.442 -3.073 16.976 1 33.35 ? C3 SQK 608 A 1 HETATM 5 C C4 SQK . . . I 3 -33.102 -4.441 16.984 1 30.81 ? C4 SQK 608 A 1 HETATM 6 C C5 SQK . . . I 3 -32.574 -5.01 15.778 1 29.59 ? C5 SQK 608 A 1 HETATM 7 C C6 SQK . . . I 3 -32.422 -4.283 14.645 1 34.92 ? C6 SQK 608 A 1 HETATM 8 C C7 SQK . . . I 3 -31.82 -4.848 13.41 1 41.38 ? C7 SQK 608 A 1 HETATM 9 C C8 SQK . . . I 3 -32.46 -5.824 12.651 1 43.68 ? C8 SQK 608 A 1 HETATM 10 C C9 SQK . . . I 3 -31.892 -6.321 11.494 1 41.7 ? C9 SQK 608 A 1 HETATM 11 C C10 SQK . . . I 3 -30.669 -5.832 11.032 1 36.7 ? C10 SQK 608 A 1 HETATM 12 C C11 SQK . . . I 3 -30.07 -6.35 9.784 1 39.8 ? C11 SQK 608 A 1 HETATM 13 C C12 SQK . . . I 3 -29.673 -7.681 9.629 1 46.26 ? C12 SQK 608 A 1 HETATM 14 N N SQK . . . I 3 -34.494 -2.552 20.258 1 27.59 ? N SQK 608 A 1 HETATM 15 C C SQK . . . I 3 -34.688 -1.117 20.307 1 29.34 ? C SQK 608 A 1 HETATM 16 O O SQK . . . I 3 -32.841 -2.22 13.598 1 37.55 ? O SQK 608 A 1 HETATM 17 C C13 SQK . . . I 3 -29.062 -8.074 8.461 1 48.62 ? C13 SQK 608 A 1 HETATM 18 C C14 SQK . . . I 3 -28.884 -7.14 7.457 1 44.59 ? C14 SQK 608 A 1 HETATM 19 C C15 SQK . . . I 3 -29.327 -5.832 7.65 1 45.34 ? C15 SQK 608 A 1 HETATM 20 C C16 SQK . . . I 3 -29.239 -4.802 6.563 1 46.1 ? C16 SQK 608 A 1 HETATM 21 C C17 SQK . . . I 3 -30.039 -4.839 11.782 1 34.8 ? C17 SQK 608 A 1 HETATM 22 C C18 SQK . . . I 3 -30.595 -4.361 12.953 1 41.78 ? C18 SQK 608 A 1 HETATM 23 C C19 SQK . . . I 3 -32.83 -2.89 14.622 1 39.09 ? C19 SQK 608 A 1 HETATM 24 C C20 SQK . . . I 3 -33.547 -0.893 15.807 1 32.59 ? C20 SQK 608 A 1 HETATM 25 C C21 SQK . . . I 3 -32.261 -0.116 15.596 1 36.62 ? C21 SQK 608 A 1 HETATM 26 C C22 SQK . . . I 3 -30.154 0.45 16.475 1 33.08 ? C22 SQK 608 A 1 HETATM 27 C C23 SQK . . . I 3 -30.282 1.837 15.85 1 39.27 ? C23 SQK 608 A 1 HETATM 28 C C24 SQK . . . I 3 -31.331 1.858 14.739 1 34.21 ? C24 SQK 608 A 1 HETATM 29 F F SQK . . . I 3 -29.919 -8.599 10.588 1 41.31 ? F SQK 608 A 1 HETATM 30 N N1 SQK . . . I 3 -33.775 -4.489 19.293 1 27.35 ? N1 SQK 608 A 1 HETATM 31 N N2 SQK . . . I 3 -33.908 -2.431 18.056 1 34.51 ? N2 SQK 608 A 1 HETATM 32 N N3 SQK . . . I 3 -29.901 -5.445 8.801 1 41.33 ? N3 SQK 608 A 1 HETATM 33 N N4 SQK . . . I 3 -33.294 -2.338 15.805 1 34.56 ? N4 SQK 608 A 1 HETATM 34 N N5 SQK . . . I 3 -28.986 2.271 15.33 1 35.57 ? N5 SQK 608 A 1 HETATM 35 O O2 SQK . . . I 3 -32.53 1.184 15.138 1 34 ? O2 SQK 608 A 1 HETATM 36 CL CL SQK . . . I 3 -34.034 -6.398 13.105 1 42.5 ? CL SQK 608 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #