data_7B35
#
_model_server_result.job_id            M-LwqPrBGiGQGEWssa0Q6Q 
_model_server_result.datetime_utc      '2024-11-15 09:35:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7b35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    7B35 
#
_exptl.entry_id    7B35 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.983 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            8-[(5-azanyl-1,3-dioxan-2-yl)methyl]-6-[2-chloranyl-4-(3-methoxy-6-methyl-pyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.191 
_cell.angle_gamma         90 
_cell.entry_id            7B35 
_cell.length_a            55.875 
_cell.length_b            93.21 
_cell.length_c            61.303 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7B35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C26 H27 Cl N6 O4' 
_chem_comp.formula_weight    522.983 
_chem_comp.id                SQB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              8-[(5-azanyl-1,3-dioxan-2-yl)methyl]-6-[2-chloranyl-4-(3-methoxy-6-methyl-pyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C16 SQB sing 290 n n 
C15 C16 SQB doub 291 n y 
C15 C14 SQB sing 292 n y 
C16 N3 SQB sing 293 n y 
C14 C12 SQB doub 294 n y 
N3 C11 SQB doub 295 n y 
C12 C11 SQB sing 296 n y 
C12 O SQB sing 297 n n 
C11 C10 SQB sing 298 n n 
C13 O SQB sing 299 n n 
C10 C9 SQB doub 300 n y 
C10 C18 SQB sing 301 n y 
C9 C8 SQB sing 302 n y 
C18 C19 SQB doub 303 n y 
C8 CL SQB sing 304 n n 
C8 C7 SQB doub 305 n y 
C19 C7 SQB sing 306 n y 
C7 C6 SQB sing 307 n n 
O1 C20 SQB doub 308 n n 
C6 C20 SQB sing 309 n n 
C6 C5 SQB doub 310 n n 
C20 N4 SQB sing 311 n n 
C25 O3 SQB sing 312 n n 
C25 C24 SQB sing 313 n n 
N5 C24 SQB sing 314 n n 
O3 C22 SQB sing 315 n n 
C5 C4 SQB sing 316 n n 
C22 C21 SQB sing 317 n n 
C22 O2 SQB sing 318 n n 
N4 C21 SQB sing 319 n n 
N4 C3 SQB sing 320 n n 
C24 C23 SQB sing 321 n n 
C23 O2 SQB sing 322 n n 
C4 C3 SQB doub 323 n y 
C4 C2 SQB sing 324 n y 
C3 N2 SQB sing 325 n y 
C2 N1 SQB doub 326 n y 
N2 C1 SQB doub 327 n y 
C1 N1 SQB sing 328 n y 
C1 N SQB sing 329 n n 
N C SQB sing 330 n n 
C9 H1 SQB sing 331 n n 
C2 H2 SQB sing 332 n n 
C5 H3 SQB sing 333 n n 
N H4 SQB sing 334 n n 
C H5 SQB sing 335 n n 
C H6 SQB sing 336 n n 
C H7 SQB sing 337 n n 
C13 H8 SQB sing 338 n n 
C13 H9 SQB sing 339 n n 
C13 H10 SQB sing 340 n n 
C14 H11 SQB sing 341 n n 
C15 H12 SQB sing 342 n n 
C17 H13 SQB sing 343 n n 
C17 H14 SQB sing 344 n n 
C17 H15 SQB sing 345 n n 
C18 H16 SQB sing 346 n n 
C19 H17 SQB sing 347 n n 
C21 H18 SQB sing 348 n n 
C21 H19 SQB sing 349 n n 
C22 H20 SQB sing 350 n n 
C23 H21 SQB sing 351 n n 
C23 H22 SQB sing 352 n n 
C24 H23 SQB sing 353 n n 
C25 H24 SQB sing 354 n n 
C25 H25 SQB sing 355 n n 
N5 H26 SQB sing 356 n n 
N5 H27 SQB sing 357 n n 
#
_atom_sites.entry_id                     7B35 
_atom_sites.fract_transf_matrix[1][1]    0.017897 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000685 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010728 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SQB A 1 401 401 SQB M13 . 
D 2 SQB B 1 401 401 SQB M13 . 
E 3 HOH A 1 501 55 HOH HOH . 
E 3 HOH A 2 502 54 HOH HOH . 
E 3 HOH A 3 503 4 HOH HOH . 
E 3 HOH A 4 504 64 HOH HOH . 
E 3 HOH A 5 505 2 HOH HOH . 
E 3 HOH A 6 506 29 HOH HOH . 
E 3 HOH A 7 507 1 HOH HOH . 
E 3 HOH A 8 508 16 HOH HOH . 
E 3 HOH A 9 509 51 HOH HOH . 
E 3 HOH A 10 510 33 HOH HOH . 
E 3 HOH A 11 511 49 HOH HOH . 
E 3 HOH A 12 512 32 HOH HOH . 
E 3 HOH A 13 513 61 HOH HOH . 
E 3 HOH A 14 514 28 HOH HOH . 
E 3 HOH A 15 515 60 HOH HOH . 
E 3 HOH A 16 516 3 HOH HOH . 
E 3 HOH A 17 517 31 HOH HOH . 
E 3 HOH A 18 518 69 HOH HOH . 
E 3 HOH A 19 519 57 HOH HOH . 
E 3 HOH A 20 520 62 HOH HOH . 
E 3 HOH A 21 521 45 HOH HOH . 
E 3 HOH A 22 522 59 HOH HOH . 
E 3 HOH A 23 523 7 HOH HOH . 
E 3 HOH A 24 524 47 HOH HOH . 
F 3 HOH B 1 501 21 HOH HOH . 
F 3 HOH B 2 502 67 HOH HOH . 
F 3 HOH B 3 503 27 HOH HOH . 
F 3 HOH B 4 504 20 HOH HOH . 
F 3 HOH B 5 505 48 HOH HOH . 
F 3 HOH B 6 506 10 HOH HOH . 
F 3 HOH B 7 507 18 HOH HOH . 
F 3 HOH B 8 508 46 HOH HOH . 
F 3 HOH B 9 509 14 HOH HOH . 
F 3 HOH B 10 510 19 HOH HOH . 
F 3 HOH B 11 511 12 HOH HOH . 
F 3 HOH B 12 512 23 HOH HOH . 
F 3 HOH B 13 513 52 HOH HOH . 
F 3 HOH B 14 514 13 HOH HOH . 
F 3 HOH B 15 515 17 HOH HOH . 
F 3 HOH B 16 516 58 HOH HOH . 
F 3 HOH B 17 517 65 HOH HOH . 
F 3 HOH B 18 518 9 HOH HOH . 
F 3 HOH B 19 519 22 HOH HOH . 
F 3 HOH B 20 520 68 HOH HOH . 
F 3 HOH B 21 521 15 HOH HOH . 
F 3 HOH B 22 522 66 HOH HOH . 
F 3 HOH B 23 523 26 HOH HOH . 
F 3 HOH B 24 524 63 HOH HOH . 
F 3 HOH B 25 525 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 SQB . . . D 2 39.91 15.609 49.348 1 38.23 ? C7 SQB 401 B 1 
HETATM 2 C C8 SQB . . . D 2 39.007 14.934 50.164 1 42.55 ? C8 SQB 401 B 1 
HETATM 3 C C9 SQB . . . D 2 38.548 15.487 51.346 1 41.07 ? C9 SQB 401 B 1 
HETATM 4 C C10 SQB . . . D 2 38.986 16.748 51.752 1 39.87 ? C10 SQB 401 B 1 
HETATM 5 C C11 SQB . . . D 2 38.565 17.328 53.051 1 37.19 ? C11 SQB 401 B 1 
HETATM 6 C C12 SQB . . . D 2 37.293 17.909 53.267 1 35.55 ? C12 SQB 401 B 1 
HETATM 7 O O1 SQB . . . D 2 42.59 14.594 49.188 1 37.74 ? O1 SQB 401 B 1 
HETATM 8 C C1 SQB . . . D 2 41.748 13.591 43.581 1 31.06 ? C1 SQB 401 B 1 
HETATM 9 C C2 SQB . . . D 2 39.772 14.155 44.556 1 30.51 ? C2 SQB 401 B 1 
HETATM 10 C C3 SQB . . . D 2 41.803 14.162 45.778 1 29.35 ? C3 SQB 401 B 1 
HETATM 11 C C4 SQB . . . D 2 40.413 14.378 45.779 1 30.22 ? C4 SQB 401 B 1 
HETATM 12 C C5 SQB . . . D 2 39.801 14.822 46.993 1 28.48 ? C5 SQB 401 B 1 
HETATM 13 C C6 SQB . . . D 2 40.507 14.998 48.132 1 28.33 ? C6 SQB 401 B 1 
HETATM 14 O O2 SQB . . . D 2 44.625 16.295 46.137 1 41.32 ? O2 SQB 401 B 1 
HETATM 15 O O3 SQB . . . D 2 46.077 15.235 47.523 1 40.7 ? O3 SQB 401 B 1 
HETATM 16 N N SQB . . . D 2 42.405 13.188 42.488 1 29.72 ? N SQB 401 B 1 
HETATM 17 C C SQB . . . D 2 43.753 12.666 42.513 1 24.26 ? C SQB 401 B 1 
HETATM 18 O O SQB . . . D 2 36.427 17.897 52.215 1 34.14 ? O SQB 401 B 1 
HETATM 19 C C13 SQB . . . D 2 35.142 18.477 52.424 1 31.3 ? C13 SQB 401 B 1 
HETATM 20 C C14 SQB . . . D 2 37.013 18.445 54.51 1 33.85 ? C14 SQB 401 B 1 
HETATM 21 C C15 SQB . . . D 2 37.981 18.398 55.496 1 29.88 ? C15 SQB 401 B 1 
HETATM 22 C C16 SQB . . . D 2 39.213 17.813 55.222 1 31.82 ? C16 SQB 401 B 1 
HETATM 23 C C17 SQB . . . D 2 40.298 17.746 56.254 1 28.97 ? C17 SQB 401 B 1 
HETATM 24 C C18 SQB . . . D 2 39.869 17.434 50.925 1 38.85 ? C18 SQB 401 B 1 
HETATM 25 C C19 SQB . . . D 2 40.323 16.88 49.744 1 39.6 ? C19 SQB 401 B 1 
HETATM 26 C C20 SQB . . . D 2 41.924 14.637 48.162 1 30.17 ? C20 SQB 401 B 1 
HETATM 27 C C21 SQB . . . D 2 43.977 14.139 46.949 1 30.67 ? C21 SQB 401 B 1 
HETATM 28 C C22 SQB . . . D 2 44.713 15.432 47.244 1 38.02 ? C22 SQB 401 B 1 
HETATM 29 C C23 SQB . . . D 2 45.109 17.606 46.454 1 38.85 ? C23 SQB 401 B 1 
HETATM 30 C C24 SQB . . . D 2 46.537 17.559 46.966 1 36.81 ? C24 SQB 401 B 1 
HETATM 31 C C25 SQB . . . D 2 46.694 16.443 47.983 1 40.03 ? C25 SQB 401 B 1 
HETATM 32 N N1 SQB . . . D 2 40.421 13.764 43.455 1 32.8 ? N1 SQB 401 B 1 
HETATM 33 N N2 SQB . . . D 2 42.481 13.773 44.692 1 31.72 ? N2 SQB 401 B 1 
HETATM 34 N N3 SQB . . . D 2 39.491 17.287 54.019 1 35.46 ? N3 SQB 401 B 1 
HETATM 35 N N4 SQB . . . D 2 42.52 14.328 46.952 1 29.58 ? N4 SQB 401 B 1 
HETATM 36 N N5 SQB . . . D 2 46.944 18.854 47.519 1 36.81 ? N5 SQB 401 B 1 
HETATM 37 CL CL SQB . . . D 2 38.429 13.36 49.724 1 40.51 ? CL SQB 401 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#