data_7B36 # _model_server_result.job_id aFPu_ok4ubpnfKLaPFl5NQ _model_server_result.datetime_utc '2024-11-08 16:43:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 7B36 # _exptl.entry_id 7B36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.957 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 8-[(trans-5-amino-1,3-dioxan-2-yl)methyl]-6-[2-chloro-4-(6-methylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7(8H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.355 _cell.angle_gamma 90 _cell.entry_id 7B36 _cell.length_a 63.749 _cell.length_b 53.186 _cell.length_c 93.518 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C25 H25 Cl N6 O3' _chem_comp.formula_weight 492.957 _chem_comp.id 59T _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(trans-5-amino-1,3-dioxan-2-yl)methyl]-6-[2-chloro-4-(6-methylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7(8H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C4 59T doub 1 n y N3 C2 59T sing 2 n y C4 C5 59T sing 3 n y C4 C8 59T sing 4 n n C5 C6 59T doub 5 n y C6 C7 59T sing 6 n y C7 C2 59T doub 7 n y C8 C13 59T doub 8 n y C8 C9 59T sing 9 n y C10 C9 59T doub 10 n y C10 C11 59T sing 11 n y C10 CL1 59T sing 12 n n C13 C12 59T sing 13 n y C15 C14 59T sing 14 n n C15 O16 59T doub 15 n n C15 N17 59T sing 16 n n C20 N19 59T doub 17 n y C20 N21 59T sing 18 n y C20 N25 59T sing 19 n n C22 N21 59T doub 20 n y C22 C23 59T sing 21 n y C24 C14 59T doub 22 n n C24 C23 59T sing 23 n n C26 N25 59T sing 24 n n C28 O30 59T sing 25 n n C28 O35 59T sing 26 n n C1 C2 59T sing 27 n n C11 C12 59T doub 28 n y C11 C14 59T sing 29 n n N17 C18 59T sing 30 n n N17 C27 59T sing 31 n n C18 N19 59T sing 32 n y C18 C23 59T doub 33 n y O30 C31 59T sing 34 n n C31 C32 59T sing 35 n n C32 C34 59T sing 36 n n C32 N36 59T sing 37 n n C34 O35 59T sing 38 n n C27 C28 59T sing 39 n n C5 H1 59T sing 40 n n C6 H2 59T sing 41 n n C7 H3 59T sing 42 n n C13 H4 59T sing 43 n n C22 H5 59T sing 44 n n C24 H6 59T sing 45 n n C26 H7 59T sing 46 n n C26 H8 59T sing 47 n n C26 H9 59T sing 48 n n C28 H10 59T sing 49 n n C1 H11 59T sing 50 n n C1 H12 59T sing 51 n n C1 H13 59T sing 52 n n C9 H14 59T sing 53 n n C12 H15 59T sing 54 n n N25 H16 59T sing 55 n n C27 H17 59T sing 56 n n C27 H18 59T sing 57 n n C31 H19 59T sing 58 n n C31 H20 59T sing 59 n n C32 H21 59T sing 60 n n C34 H22 59T sing 61 n n C34 H23 59T sing 62 n n N36 H24 59T sing 63 n n N36 H25 59T sing 64 n n # _atom_sites.entry_id 7B36 _atom_sites.fract_transf_matrix[1][1] 0.015687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001747 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 701 701 EDO EDO . D 2 EDO A 1 702 801 EDO EDO . E 3 59T A 1 703 902 59T G55 . F 4 CL A 1 704 1 CL CL . G 2 EDO C 1 501 501 EDO EDO . H 3 59T C 1 502 502 59T G55 . I 5 HOH A 1 801 55 HOH HOH . I 5 HOH A 2 802 19 HOH HOH . I 5 HOH A 3 803 51 HOH HOH . I 5 HOH A 4 804 21 HOH HOH . I 5 HOH A 5 805 32 HOH HOH . I 5 HOH A 6 806 4 HOH HOH . I 5 HOH A 7 807 27 HOH HOH . I 5 HOH A 8 808 24 HOH HOH . I 5 HOH A 9 809 20 HOH HOH . I 5 HOH A 10 810 74 HOH HOH . I 5 HOH A 11 811 99 HOH HOH . I 5 HOH A 12 812 95 HOH HOH . I 5 HOH A 13 813 52 HOH HOH . I 5 HOH A 14 814 45 HOH HOH . I 5 HOH A 15 815 26 HOH HOH . I 5 HOH A 16 816 17 HOH HOH . I 5 HOH A 17 817 8 HOH HOH . I 5 HOH A 18 818 25 HOH HOH . I 5 HOH A 19 819 28 HOH HOH . I 5 HOH A 20 820 6 HOH HOH . I 5 HOH A 21 821 86 HOH HOH . I 5 HOH A 22 822 100 HOH HOH . I 5 HOH A 23 823 30 HOH HOH . I 5 HOH A 24 824 9 HOH HOH . I 5 HOH A 25 825 54 HOH HOH . I 5 HOH A 26 826 71 HOH HOH . I 5 HOH A 27 827 22 HOH HOH . I 5 HOH A 28 828 69 HOH HOH . I 5 HOH A 29 829 39 HOH HOH . I 5 HOH A 30 830 70 HOH HOH . I 5 HOH A 31 831 23 HOH HOH . I 5 HOH A 32 832 7 HOH HOH . I 5 HOH A 33 833 57 HOH HOH . I 5 HOH A 34 834 94 HOH HOH . I 5 HOH A 35 835 63 HOH HOH . I 5 HOH A 36 836 92 HOH HOH . I 5 HOH A 37 837 89 HOH HOH . I 5 HOH A 38 838 29 HOH HOH . I 5 HOH A 39 839 5 HOH HOH . J 5 HOH C 1 601 83 HOH HOH . J 5 HOH C 2 602 40 HOH HOH . J 5 HOH C 3 603 80 HOH HOH . J 5 HOH C 4 604 44 HOH HOH . J 5 HOH C 5 605 35 HOH HOH . J 5 HOH C 6 606 34 HOH HOH . J 5 HOH C 7 607 37 HOH HOH . J 5 HOH C 8 608 42 HOH HOH . J 5 HOH C 9 609 47 HOH HOH . J 5 HOH C 10 610 41 HOH HOH . J 5 HOH C 11 611 98 HOH HOH . J 5 HOH C 12 612 58 HOH HOH . J 5 HOH C 13 613 11 HOH HOH . J 5 HOH C 14 614 56 HOH HOH . J 5 HOH C 15 615 66 HOH HOH . J 5 HOH C 16 616 82 HOH HOH . J 5 HOH C 17 617 14 HOH HOH . J 5 HOH C 18 618 62 HOH HOH . J 5 HOH C 19 619 78 HOH HOH . J 5 HOH C 20 620 75 HOH HOH . J 5 HOH C 21 621 43 HOH HOH . J 5 HOH C 22 622 36 HOH HOH . J 5 HOH C 23 623 88 HOH HOH . J 5 HOH C 24 624 12 HOH HOH . J 5 HOH C 25 625 87 HOH HOH . J 5 HOH C 26 626 67 HOH HOH . J 5 HOH C 27 627 79 HOH HOH . J 5 HOH C 28 628 13 HOH HOH . J 5 HOH C 29 629 81 HOH HOH . J 5 HOH C 30 630 59 HOH HOH . J 5 HOH C 31 631 73 HOH HOH . J 5 HOH C 32 632 60 HOH HOH . J 5 HOH C 33 633 76 HOH HOH . J 5 HOH C 34 634 48 HOH HOH . J 5 HOH C 35 635 64 HOH HOH . J 5 HOH C 36 636 102 HOH HOH . J 5 HOH C 37 637 101 HOH HOH . J 5 HOH C 38 638 97 HOH HOH . J 5 HOH C 39 639 72 HOH HOH . J 5 HOH C 40 640 61 HOH HOH . J 5 HOH C 41 641 31 HOH HOH . J 5 HOH C 42 642 16 HOH HOH . J 5 HOH C 43 643 103 HOH HOH . J 5 HOH C 44 644 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 59T . . . H 3 8.367 4.462 -5.464 1 45.98 ? N3 59T 502 C 1 HETATM 2 C C4 59T . . . H 3 9.297 5.43 -5.321 1 45.15 ? C4 59T 502 C 1 HETATM 3 C C5 59T . . . H 3 9.017 6.647 -4.713 1 49.44 ? C5 59T 502 C 1 HETATM 4 C C6 59T . . . H 3 7.744 6.871 -4.232 1 51.14 ? C6 59T 502 C 1 HETATM 5 C C7 59T . . . H 3 6.785 5.889 -4.37 1 53.32 ? C7 59T 502 C 1 HETATM 6 C C8 59T . . . H 3 10.643 5.12 -5.866 1 53.38 ? C8 59T 502 C 1 HETATM 7 C C10 59T . . . H 3 12.205 5.123 -7.702 1 59.49 ? C10 59T 502 C 1 HETATM 8 C C13 59T . . . H 3 11.594 4.446 -5.104 1 54.78 ? C13 59T 502 C 1 HETATM 9 C C15 59T . . . H 3 14.508 2.54 -7.963 1 33.77 ? C15 59T 502 C 1 HETATM 10 C C20 59T . . . H 3 19.023 3.134 -9.111 1 32.76 ? C20 59T 502 C 1 HETATM 11 C C22 59T . . . H 3 17.951 4.969 -8.289 1 35.2 ? C22 59T 502 C 1 HETATM 12 C C24 59T . . . H 3 15.518 4.727 -7.644 1 33.94 ? C24 59T 502 C 1 HETATM 13 C C26 59T . . . H 3 20.373 1.187 -9.763 1 31.92 ? C26 59T 502 C 1 HETATM 14 C C28 59T . . . H 3 15.599 -0.149 -7.323 1 37.9 ? C28 59T 502 C 1 HETATM 15 C C1 59T . . . H 3 6.114 3.608 -5.213 1 55.04 ? C1 59T 502 C 1 HETATM 16 C C2 59T . . . H 3 7.124 4.695 -4.999 1 52.45 ? C2 59T 502 C 1 HETATM 17 C C9 59T . . . H 3 10.973 5.467 -7.177 1 52.55 ? C9 59T 502 C 1 HETATM 18 C C11 59T . . . H 3 13.146 4.423 -6.956 1 53.26 ? C11 59T 502 C 1 HETATM 19 C C12 59T . . . H 3 12.826 4.106 -5.634 1 58.51 ? C12 59T 502 C 1 HETATM 20 C C14 59T . . . H 3 14.422 3.938 -7.547 1 38.03 ? C14 59T 502 C 1 HETATM 21 O O16 59T . . . H 3 13.538 1.798 -8.064 1 37.78 ? O16 59T 502 C 1 HETATM 22 N N17 59T . . . H 3 15.745 2.073 -8.357 1 38.63 ? N17 59T 502 C 1 HETATM 23 C C18 59T . . . H 3 16.865 2.871 -8.46 1 36.56 ? C18 59T 502 C 1 HETATM 24 N N19 59T . . . H 3 17.976 2.305 -8.951 1 35.45 ? N19 59T 502 C 1 HETATM 25 N N21 59T . . . H 3 19.074 4.44 -8.789 1 37.03 ? N21 59T 502 C 1 HETATM 26 C C23 59T . . . H 3 16.778 4.23 -8.109 1 33.09 ? C23 59T 502 C 1 HETATM 27 N N25 59T . . . H 3 20.12 2.612 -9.674 1 32.92 ? N25 59T 502 C 1 HETATM 28 C C27 59T . . . H 3 15.869 0.631 -8.591 1 37.39 ? C27 59T 502 C 1 HETATM 29 O O30 59T . . . H 3 16.655 0.096 -6.426 1 36.74 ? O30 59T 502 C 1 HETATM 30 C C31 59T . . . H 3 16.403 -0.515 -5.152 1 42.13 ? C31 59T 502 C 1 HETATM 31 C C32 59T . . . H 3 16.102 -1.997 -5.294 1 43.1 ? C32 59T 502 C 1 HETATM 32 C C34 59T . . . H 3 15.125 -2.249 -6.434 1 43.82 ? C34 59T 502 C 1 HETATM 33 O O35 59T . . . H 3 15.489 -1.514 -7.606 1 36.39 ? O35 59T 502 C 1 HETATM 34 N N36 59T . . . H 3 15.564 -2.551 -4.05 1 40.89 ? N36 59T 502 C 1 HETATM 35 CL CL1 59T . . . H 3 12.576 5.613 -9.322 1 60.78 ? CL1 59T 502 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #