data_7B36 # _model_server_result.job_id 7m4Yw2_ZH89X4tWjtYghzA _model_server_result.datetime_utc '2024-11-08 16:43:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 7B36 # _exptl.entry_id 7B36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.957 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 8-[(trans-5-amino-1,3-dioxan-2-yl)methyl]-6-[2-chloro-4-(6-methylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7(8H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.355 _cell.angle_gamma 90 _cell.entry_id 7B36 _cell.length_a 63.749 _cell.length_b 53.186 _cell.length_c 93.518 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C25 H25 Cl N6 O3' _chem_comp.formula_weight 492.957 _chem_comp.id 59T _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(trans-5-amino-1,3-dioxan-2-yl)methyl]-6-[2-chloro-4-(6-methylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7(8H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C4 59T doub 1 n y N3 C2 59T sing 2 n y C4 C5 59T sing 3 n y C4 C8 59T sing 4 n n C5 C6 59T doub 5 n y C6 C7 59T sing 6 n y C7 C2 59T doub 7 n y C8 C13 59T doub 8 n y C8 C9 59T sing 9 n y C10 C9 59T doub 10 n y C10 C11 59T sing 11 n y C10 CL1 59T sing 12 n n C13 C12 59T sing 13 n y C15 C14 59T sing 14 n n C15 O16 59T doub 15 n n C15 N17 59T sing 16 n n C20 N19 59T doub 17 n y C20 N21 59T sing 18 n y C20 N25 59T sing 19 n n C22 N21 59T doub 20 n y C22 C23 59T sing 21 n y C24 C14 59T doub 22 n n C24 C23 59T sing 23 n n C26 N25 59T sing 24 n n C28 O30 59T sing 25 n n C28 O35 59T sing 26 n n C1 C2 59T sing 27 n n C11 C12 59T doub 28 n y C11 C14 59T sing 29 n n N17 C18 59T sing 30 n n N17 C27 59T sing 31 n n C18 N19 59T sing 32 n y C18 C23 59T doub 33 n y O30 C31 59T sing 34 n n C31 C32 59T sing 35 n n C32 C34 59T sing 36 n n C32 N36 59T sing 37 n n C34 O35 59T sing 38 n n C27 C28 59T sing 39 n n C5 H1 59T sing 40 n n C6 H2 59T sing 41 n n C7 H3 59T sing 42 n n C13 H4 59T sing 43 n n C22 H5 59T sing 44 n n C24 H6 59T sing 45 n n C26 H7 59T sing 46 n n C26 H8 59T sing 47 n n C26 H9 59T sing 48 n n C28 H10 59T sing 49 n n C1 H11 59T sing 50 n n C1 H12 59T sing 51 n n C1 H13 59T sing 52 n n C9 H14 59T sing 53 n n C12 H15 59T sing 54 n n N25 H16 59T sing 55 n n C27 H17 59T sing 56 n n C27 H18 59T sing 57 n n C31 H19 59T sing 58 n n C31 H20 59T sing 59 n n C32 H21 59T sing 60 n n C34 H22 59T sing 61 n n C34 H23 59T sing 62 n n N36 H24 59T sing 63 n n N36 H25 59T sing 64 n n # _atom_sites.entry_id 7B36 _atom_sites.fract_transf_matrix[1][1] 0.015687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001747 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 701 701 EDO EDO . D 2 EDO A 1 702 801 EDO EDO . E 3 59T A 1 703 902 59T G55 . F 4 CL A 1 704 1 CL CL . G 2 EDO C 1 501 501 EDO EDO . H 3 59T C 1 502 502 59T G55 . I 5 HOH A 1 801 55 HOH HOH . I 5 HOH A 2 802 19 HOH HOH . I 5 HOH A 3 803 51 HOH HOH . I 5 HOH A 4 804 21 HOH HOH . I 5 HOH A 5 805 32 HOH HOH . I 5 HOH A 6 806 4 HOH HOH . I 5 HOH A 7 807 27 HOH HOH . I 5 HOH A 8 808 24 HOH HOH . I 5 HOH A 9 809 20 HOH HOH . I 5 HOH A 10 810 74 HOH HOH . I 5 HOH A 11 811 99 HOH HOH . I 5 HOH A 12 812 95 HOH HOH . I 5 HOH A 13 813 52 HOH HOH . I 5 HOH A 14 814 45 HOH HOH . I 5 HOH A 15 815 26 HOH HOH . I 5 HOH A 16 816 17 HOH HOH . I 5 HOH A 17 817 8 HOH HOH . I 5 HOH A 18 818 25 HOH HOH . I 5 HOH A 19 819 28 HOH HOH . I 5 HOH A 20 820 6 HOH HOH . I 5 HOH A 21 821 86 HOH HOH . I 5 HOH A 22 822 100 HOH HOH . I 5 HOH A 23 823 30 HOH HOH . I 5 HOH A 24 824 9 HOH HOH . I 5 HOH A 25 825 54 HOH HOH . I 5 HOH A 26 826 71 HOH HOH . I 5 HOH A 27 827 22 HOH HOH . I 5 HOH A 28 828 69 HOH HOH . I 5 HOH A 29 829 39 HOH HOH . I 5 HOH A 30 830 70 HOH HOH . I 5 HOH A 31 831 23 HOH HOH . I 5 HOH A 32 832 7 HOH HOH . I 5 HOH A 33 833 57 HOH HOH . I 5 HOH A 34 834 94 HOH HOH . I 5 HOH A 35 835 63 HOH HOH . I 5 HOH A 36 836 92 HOH HOH . I 5 HOH A 37 837 89 HOH HOH . I 5 HOH A 38 838 29 HOH HOH . I 5 HOH A 39 839 5 HOH HOH . J 5 HOH C 1 601 83 HOH HOH . J 5 HOH C 2 602 40 HOH HOH . J 5 HOH C 3 603 80 HOH HOH . J 5 HOH C 4 604 44 HOH HOH . J 5 HOH C 5 605 35 HOH HOH . J 5 HOH C 6 606 34 HOH HOH . J 5 HOH C 7 607 37 HOH HOH . J 5 HOH C 8 608 42 HOH HOH . J 5 HOH C 9 609 47 HOH HOH . J 5 HOH C 10 610 41 HOH HOH . J 5 HOH C 11 611 98 HOH HOH . J 5 HOH C 12 612 58 HOH HOH . J 5 HOH C 13 613 11 HOH HOH . J 5 HOH C 14 614 56 HOH HOH . J 5 HOH C 15 615 66 HOH HOH . J 5 HOH C 16 616 82 HOH HOH . J 5 HOH C 17 617 14 HOH HOH . J 5 HOH C 18 618 62 HOH HOH . J 5 HOH C 19 619 78 HOH HOH . J 5 HOH C 20 620 75 HOH HOH . J 5 HOH C 21 621 43 HOH HOH . J 5 HOH C 22 622 36 HOH HOH . J 5 HOH C 23 623 88 HOH HOH . J 5 HOH C 24 624 12 HOH HOH . J 5 HOH C 25 625 87 HOH HOH . J 5 HOH C 26 626 67 HOH HOH . J 5 HOH C 27 627 79 HOH HOH . J 5 HOH C 28 628 13 HOH HOH . J 5 HOH C 29 629 81 HOH HOH . J 5 HOH C 30 630 59 HOH HOH . J 5 HOH C 31 631 73 HOH HOH . J 5 HOH C 32 632 60 HOH HOH . J 5 HOH C 33 633 76 HOH HOH . J 5 HOH C 34 634 48 HOH HOH . J 5 HOH C 35 635 64 HOH HOH . J 5 HOH C 36 636 102 HOH HOH . J 5 HOH C 37 637 101 HOH HOH . J 5 HOH C 38 638 97 HOH HOH . J 5 HOH C 39 639 72 HOH HOH . J 5 HOH C 40 640 61 HOH HOH . J 5 HOH C 41 641 31 HOH HOH . J 5 HOH C 42 642 16 HOH HOH . J 5 HOH C 43 643 103 HOH HOH . J 5 HOH C 44 644 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 59T . . . E 3 3.452 5.663 51.944 1 50.05 ? N3 59T 703 A 1 HETATM 2 C C4 59T . . . E 3 4.377 4.68 51.866 1 48.61 ? C4 59T 703 A 1 HETATM 3 C C5 59T . . . E 3 4.119 3.461 51.246 1 48.27 ? C5 59T 703 A 1 HETATM 4 C C6 59T . . . E 3 2.883 3.26 50.662 1 43.38 ? C6 59T 703 A 1 HETATM 5 C C7 59T . . . E 3 1.939 4.267 50.71 1 48.54 ? C7 59T 703 A 1 HETATM 6 C C8 59T . . . E 3 5.719 5.011 52.411 1 56.22 ? C8 59T 703 A 1 HETATM 7 C C10 59T . . . E 3 7.284 5.067 54.246 1 51.94 ? C10 59T 703 A 1 HETATM 8 C C13 59T . . . E 3 6.687 5.619 51.615 1 57.18 ? C13 59T 703 A 1 HETATM 9 C C15 59T . . . E 3 9.583 7.621 54.399 1 30.1 ? C15 59T 703 A 1 HETATM 10 C C20 59T . . . E 3 14.074 7.113 55.642 1 34.16 ? C20 59T 703 A 1 HETATM 11 C C22 59T . . . E 3 13.022 5.23 54.901 1 34.45 ? C22 59T 703 A 1 HETATM 12 C C24 59T . . . E 3 10.614 5.438 54.158 1 32.21 ? C24 59T 703 A 1 HETATM 13 C C26 59T . . . E 3 15.358 9.112 56.261 1 31.56 ? C26 59T 703 A 1 HETATM 14 C C28 59T . . . E 3 10.539 10.33 53.674 1 31.99 ? C28 59T 703 A 1 HETATM 15 C C1 59T . . . E 3 1.267 6.588 51.452 1 47.27 ? C1 59T 703 A 1 HETATM 16 C C2 59T . . . E 3 2.252 5.459 51.365 1 50.67 ? C2 59T 703 A 1 HETATM 17 C C9 59T . . . E 3 6.04 4.732 53.742 1 47.91 ? C9 59T 703 A 1 HETATM 18 C C11 59T . . . E 3 8.239 5.703 53.463 1 42.01 ? C11 59T 703 A 1 HETATM 19 C C12 59T . . . E 3 7.926 5.956 52.127 1 51.97 ? C12 59T 703 A 1 HETATM 20 C C14 59T . . . E 3 9.512 6.215 54.033 1 28.49 ? C14 59T 703 A 1 HETATM 21 O O16 59T . . . E 3 8.597 8.341 54.487 1 38.2 ? O16 59T 703 A 1 HETATM 22 N N17 59T . . . E 3 10.813 8.127 54.764 1 28.17 ? N17 59T 703 A 1 HETATM 23 C C18 59T . . . E 3 11.94 7.344 54.906 1 32.32 ? C18 59T 703 A 1 HETATM 24 N N19 59T . . . E 3 13.035 7.933 55.401 1 33.08 ? N19 59T 703 A 1 HETATM 25 N N21 59T . . . E 3 14.124 5.785 55.421 1 37.93 ? N21 59T 703 A 1 HETATM 26 C C23 59T . . . E 3 11.865 5.962 54.622 1 35.65 ? C23 59T 703 A 1 HETATM 27 N N25 59T . . . E 3 15.181 7.679 56.139 1 36.97 ? N25 59T 703 A 1 HETATM 28 C C27 59T . . . E 3 10.91 9.582 54.939 1 30.16 ? C27 59T 703 A 1 HETATM 29 O O30 59T . . . E 3 11.619 10.196 52.779 1 37.74 ? O30 59T 703 A 1 HETATM 30 C C31 59T . . . E 3 11.338 10.821 51.518 1 37.29 ? C31 59T 703 A 1 HETATM 31 C C32 59T . . . E 3 10.95 12.278 51.69 1 36.43 ? C32 59T 703 A 1 HETATM 32 C C34 59T . . . E 3 9.953 12.434 52.837 1 35.96 ? C34 59T 703 A 1 HETATM 33 O O35 59T . . . E 3 10.361 11.683 53.987 1 31.82 ? O35 59T 703 A 1 HETATM 34 N N36 59T . . . E 3 10.418 12.822 50.436 1 35.28 ? N36 59T 703 A 1 HETATM 35 CL CL1 59T . . . E 3 7.659 4.658 55.895 1 56.6 ? CL1 59T 703 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 35 #