data_7B3F # _model_server_result.job_id Eomey2hZ98sUg0ker4obmA _model_server_result.datetime_utc '2024-11-13 04:03:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 7B3F # _exptl.entry_id 7B3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B3F _cell.length_a 60.305 _cell.length_b 71.256 _cell.length_c 78.296 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomer _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 7B3F _atom_sites.fract_transf_matrix[1][1] 0.016582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014034 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 1453 NAG NAG . C 3 SO4 A 1 502 1455 SO4 SO4 . D 3 SO4 A 1 503 1456 SO4 SO4 . E 3 SO4 A 1 504 1457 SO4 SO4 . F 4 DMS A 1 505 1501 DMS DMS . G 5 EDO A 1 506 1701 EDO EDO . H 5 EDO A 1 507 2101 EDO EDO . I 6 SRK A 1 508 2301 SRK XXX . J 4 DMS A 1 509 2401 DMS DMS . K 4 DMS A 1 510 2501 DMS DMS . L 3 SO4 A 1 511 1 SO4 SO4 . M 7 HOH A 1 601 225 HOH HOH . M 7 HOH A 2 602 12 HOH HOH . M 7 HOH A 3 603 77 HOH HOH . M 7 HOH A 4 604 107 HOH HOH . M 7 HOH A 5 605 124 HOH HOH . M 7 HOH A 6 606 111 HOH HOH . M 7 HOH A 7 607 15 HOH HOH . M 7 HOH A 8 608 211 HOH HOH . M 7 HOH A 9 609 146 HOH HOH . M 7 HOH A 10 610 27 HOH HOH . M 7 HOH A 11 611 52 HOH HOH . M 7 HOH A 12 612 109 HOH HOH . M 7 HOH A 13 613 5 HOH HOH . M 7 HOH A 14 614 14 HOH HOH . M 7 HOH A 15 615 9 HOH HOH . M 7 HOH A 16 616 128 HOH HOH . M 7 HOH A 17 617 233 HOH HOH . M 7 HOH A 18 618 142 HOH HOH . M 7 HOH A 19 619 85 HOH HOH . M 7 HOH A 20 620 221 HOH HOH . M 7 HOH A 21 621 87 HOH HOH . M 7 HOH A 22 622 44 HOH HOH . M 7 HOH A 23 623 30 HOH HOH . M 7 HOH A 24 624 40 HOH HOH . M 7 HOH A 25 625 93 HOH HOH . M 7 HOH A 26 626 18 HOH HOH . M 7 HOH A 27 627 16 HOH HOH . M 7 HOH A 28 628 60 HOH HOH . M 7 HOH A 29 629 230 HOH HOH . M 7 HOH A 30 630 215 HOH HOH . M 7 HOH A 31 631 48 HOH HOH . M 7 HOH A 32 632 113 HOH HOH . M 7 HOH A 33 633 57 HOH HOH . M 7 HOH A 34 634 11 HOH HOH . M 7 HOH A 35 635 64 HOH HOH . M 7 HOH A 36 636 67 HOH HOH . M 7 HOH A 37 637 37 HOH HOH . M 7 HOH A 38 638 216 HOH HOH . M 7 HOH A 39 639 82 HOH HOH . M 7 HOH A 40 640 26 HOH HOH . M 7 HOH A 41 641 25 HOH HOH . M 7 HOH A 42 642 65 HOH HOH . M 7 HOH A 43 643 72 HOH HOH . M 7 HOH A 44 644 61 HOH HOH . M 7 HOH A 45 645 95 HOH HOH . M 7 HOH A 46 646 99 HOH HOH . M 7 HOH A 47 647 222 HOH HOH . M 7 HOH A 48 648 101 HOH HOH . M 7 HOH A 49 649 125 HOH HOH . M 7 HOH A 50 650 86 HOH HOH . M 7 HOH A 51 651 71 HOH HOH . M 7 HOH A 52 652 34 HOH HOH . M 7 HOH A 53 653 217 HOH HOH . M 7 HOH A 54 654 106 HOH HOH . M 7 HOH A 55 655 6 HOH HOH . M 7 HOH A 56 656 105 HOH HOH . M 7 HOH A 57 657 13 HOH HOH . M 7 HOH A 58 658 62 HOH HOH . M 7 HOH A 59 659 96 HOH HOH . M 7 HOH A 60 660 8 HOH HOH . M 7 HOH A 61 661 161 HOH HOH . M 7 HOH A 62 662 42 HOH HOH . M 7 HOH A 63 663 141 HOH HOH . M 7 HOH A 64 664 198 HOH HOH . M 7 HOH A 65 665 119 HOH HOH . M 7 HOH A 66 666 114 HOH HOH . M 7 HOH A 67 667 2 HOH HOH . M 7 HOH A 68 668 66 HOH HOH . M 7 HOH A 69 669 88 HOH HOH . M 7 HOH A 70 670 112 HOH HOH . M 7 HOH A 71 671 43 HOH HOH . M 7 HOH A 72 672 214 HOH HOH . M 7 HOH A 73 673 117 HOH HOH . M 7 HOH A 74 674 59 HOH HOH . M 7 HOH A 75 675 7 HOH HOH . M 7 HOH A 76 676 50 HOH HOH . M 7 HOH A 77 677 232 HOH HOH . M 7 HOH A 78 678 89 HOH HOH . M 7 HOH A 79 679 218 HOH HOH . M 7 HOH A 80 680 231 HOH HOH . M 7 HOH A 81 681 212 HOH HOH . M 7 HOH A 82 682 17 HOH HOH . M 7 HOH A 83 683 122 HOH HOH . M 7 HOH A 84 684 158 HOH HOH . M 7 HOH A 85 685 54 HOH HOH . M 7 HOH A 86 686 45 HOH HOH . M 7 HOH A 87 687 39 HOH HOH . M 7 HOH A 88 688 139 HOH HOH . M 7 HOH A 89 689 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 31.392 54.547 94.312 1 44.39 ? C1 EDO 507 A 1 HETATM 2 O O1 EDO . . . H 5 31.175 55.49 93.259 1 42.14 ? O1 EDO 507 A 1 HETATM 3 C C2 EDO . . . H 5 30.084 53.794 94.473 1 37.49 ? C2 EDO 507 A 1 HETATM 4 O O2 EDO . . . H 5 29.23 54.574 95.309 1 37.29 ? O2 EDO 507 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #