data_7B3F
#
_model_server_result.job_id            vAwbUJDEBfFDuVvoXKsbVA 
_model_server_result.datetime_utc      '2024-11-23 03:49:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7b3f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":507}' 
#
_entry.id    7B3F 
#
_exptl.entry_id    7B3F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7B3F 
_cell.length_a            60.305 
_cell.length_b            71.256 
_cell.length_c            78.296 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7B3F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomer 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     7B3F 
_atom_sites.fract_transf_matrix[1][1]    0.016582 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014034 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012772 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 501 1453 NAG NAG . 
C 3 SO4 A 1 502 1455 SO4 SO4 . 
D 3 SO4 A 1 503 1456 SO4 SO4 . 
E 3 SO4 A 1 504 1457 SO4 SO4 . 
F 4 DMS A 1 505 1501 DMS DMS . 
G 5 EDO A 1 506 1701 EDO EDO . 
H 5 EDO A 1 507 2101 EDO EDO . 
I 6 SRK A 1 508 2301 SRK XXX . 
J 4 DMS A 1 509 2401 DMS DMS . 
K 4 DMS A 1 510 2501 DMS DMS . 
L 3 SO4 A 1 511 1 SO4 SO4 . 
M 7 HOH A 1 601 225 HOH HOH . 
M 7 HOH A 2 602 12 HOH HOH . 
M 7 HOH A 3 603 77 HOH HOH . 
M 7 HOH A 4 604 107 HOH HOH . 
M 7 HOH A 5 605 124 HOH HOH . 
M 7 HOH A 6 606 111 HOH HOH . 
M 7 HOH A 7 607 15 HOH HOH . 
M 7 HOH A 8 608 211 HOH HOH . 
M 7 HOH A 9 609 146 HOH HOH . 
M 7 HOH A 10 610 27 HOH HOH . 
M 7 HOH A 11 611 52 HOH HOH . 
M 7 HOH A 12 612 109 HOH HOH . 
M 7 HOH A 13 613 5 HOH HOH . 
M 7 HOH A 14 614 14 HOH HOH . 
M 7 HOH A 15 615 9 HOH HOH . 
M 7 HOH A 16 616 128 HOH HOH . 
M 7 HOH A 17 617 233 HOH HOH . 
M 7 HOH A 18 618 142 HOH HOH . 
M 7 HOH A 19 619 85 HOH HOH . 
M 7 HOH A 20 620 221 HOH HOH . 
M 7 HOH A 21 621 87 HOH HOH . 
M 7 HOH A 22 622 44 HOH HOH . 
M 7 HOH A 23 623 30 HOH HOH . 
M 7 HOH A 24 624 40 HOH HOH . 
M 7 HOH A 25 625 93 HOH HOH . 
M 7 HOH A 26 626 18 HOH HOH . 
M 7 HOH A 27 627 16 HOH HOH . 
M 7 HOH A 28 628 60 HOH HOH . 
M 7 HOH A 29 629 230 HOH HOH . 
M 7 HOH A 30 630 215 HOH HOH . 
M 7 HOH A 31 631 48 HOH HOH . 
M 7 HOH A 32 632 113 HOH HOH . 
M 7 HOH A 33 633 57 HOH HOH . 
M 7 HOH A 34 634 11 HOH HOH . 
M 7 HOH A 35 635 64 HOH HOH . 
M 7 HOH A 36 636 67 HOH HOH . 
M 7 HOH A 37 637 37 HOH HOH . 
M 7 HOH A 38 638 216 HOH HOH . 
M 7 HOH A 39 639 82 HOH HOH . 
M 7 HOH A 40 640 26 HOH HOH . 
M 7 HOH A 41 641 25 HOH HOH . 
M 7 HOH A 42 642 65 HOH HOH . 
M 7 HOH A 43 643 72 HOH HOH . 
M 7 HOH A 44 644 61 HOH HOH . 
M 7 HOH A 45 645 95 HOH HOH . 
M 7 HOH A 46 646 99 HOH HOH . 
M 7 HOH A 47 647 222 HOH HOH . 
M 7 HOH A 48 648 101 HOH HOH . 
M 7 HOH A 49 649 125 HOH HOH . 
M 7 HOH A 50 650 86 HOH HOH . 
M 7 HOH A 51 651 71 HOH HOH . 
M 7 HOH A 52 652 34 HOH HOH . 
M 7 HOH A 53 653 217 HOH HOH . 
M 7 HOH A 54 654 106 HOH HOH . 
M 7 HOH A 55 655 6 HOH HOH . 
M 7 HOH A 56 656 105 HOH HOH . 
M 7 HOH A 57 657 13 HOH HOH . 
M 7 HOH A 58 658 62 HOH HOH . 
M 7 HOH A 59 659 96 HOH HOH . 
M 7 HOH A 60 660 8 HOH HOH . 
M 7 HOH A 61 661 161 HOH HOH . 
M 7 HOH A 62 662 42 HOH HOH . 
M 7 HOH A 63 663 141 HOH HOH . 
M 7 HOH A 64 664 198 HOH HOH . 
M 7 HOH A 65 665 119 HOH HOH . 
M 7 HOH A 66 666 114 HOH HOH . 
M 7 HOH A 67 667 2 HOH HOH . 
M 7 HOH A 68 668 66 HOH HOH . 
M 7 HOH A 69 669 88 HOH HOH . 
M 7 HOH A 70 670 112 HOH HOH . 
M 7 HOH A 71 671 43 HOH HOH . 
M 7 HOH A 72 672 214 HOH HOH . 
M 7 HOH A 73 673 117 HOH HOH . 
M 7 HOH A 74 674 59 HOH HOH . 
M 7 HOH A 75 675 7 HOH HOH . 
M 7 HOH A 76 676 50 HOH HOH . 
M 7 HOH A 77 677 232 HOH HOH . 
M 7 HOH A 78 678 89 HOH HOH . 
M 7 HOH A 79 679 218 HOH HOH . 
M 7 HOH A 80 680 231 HOH HOH . 
M 7 HOH A 81 681 212 HOH HOH . 
M 7 HOH A 82 682 17 HOH HOH . 
M 7 HOH A 83 683 122 HOH HOH . 
M 7 HOH A 84 684 158 HOH HOH . 
M 7 HOH A 85 685 54 HOH HOH . 
M 7 HOH A 86 686 45 HOH HOH . 
M 7 HOH A 87 687 39 HOH HOH . 
M 7 HOH A 88 688 139 HOH HOH . 
M 7 HOH A 89 689 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 5 31.392 54.547 94.312 1 44.39 ? C1 EDO 507 A 1 
HETATM 2 O O1 EDO . . . H 5 31.175 55.49 93.259 1 42.14 ? O1 EDO 507 A 1 
HETATM 3 C C2 EDO . . . H 5 30.084 53.794 94.473 1 37.49 ? C2 EDO 507 A 1 
HETATM 4 O O2 EDO . . . H 5 29.23 54.574 95.309 1 37.29 ? O2 EDO 507 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#