data_7B3M # _model_server_result.job_id ku-tcSdGLOou-TMMoxa0ww _model_server_result.datetime_utc '2024-11-08 05:59:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 7B3M # _exptl.entry_id 7B3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B3M _cell.length_a 57.685 _cell.length_b 71.916 _cell.length_c 157.715 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 176 A ASN 195 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 A OD2 ASP 189 A ASP 208 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc3 C MG MG . A MG 401 1_555 D O1A ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc4 C MG MG . A MG 401 1_555 D O2B ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc5 C MG MG . A MG 401 1_555 D O1G ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc6 C MG MG . A MG 401 1_555 J O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc7 B OD1 ASN 176 B ASN 195 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc8 B OD2 ASP 189 B ASP 208 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc9 G MG MG . B MG 401 1_555 H O1A ANP . B ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc10 G MG MG . B MG 401 1_555 H O1G ANP . B ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc11 G MG MG . B MG 401 1_555 H O2B ANP . B ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc12 G MG MG . B MG 401 1_555 K O HOH . B HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7B3M _atom_sites.fract_transf_matrix[1][1] 0.017336 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 500 MG MG . D 3 ANP A 1 402 601 ANP ANP . E 4 SU5 A 1 403 1 SU5 INH . F 5 SO4 A 1 404 1 SO4 SO4 . G 2 MG B 1 401 500 MG MG . H 3 ANP B 1 402 601 ANP ANP . I 4 SU5 B 1 403 2 SU5 INH . J 6 HOH A 1 501 53 HOH HOH . J 6 HOH A 2 502 138 HOH HOH . J 6 HOH A 3 503 1 HOH HOH . J 6 HOH A 4 504 104 HOH HOH . J 6 HOH A 5 505 21 HOH HOH . J 6 HOH A 6 506 120 HOH HOH . J 6 HOH A 7 507 135 HOH HOH . J 6 HOH A 8 508 12 HOH HOH . J 6 HOH A 9 509 39 HOH HOH . J 6 HOH A 10 510 133 HOH HOH . J 6 HOH A 11 511 63 HOH HOH . J 6 HOH A 12 512 110 HOH HOH . J 6 HOH A 13 513 5 HOH HOH . J 6 HOH A 14 514 74 HOH HOH . J 6 HOH A 15 515 114 HOH HOH . J 6 HOH A 16 516 32 HOH HOH . J 6 HOH A 17 517 157 HOH HOH . J 6 HOH A 18 518 84 HOH HOH . J 6 HOH A 19 519 103 HOH HOH . J 6 HOH A 20 520 91 HOH HOH . J 6 HOH A 21 521 45 HOH HOH . J 6 HOH A 22 522 96 HOH HOH . J 6 HOH A 23 523 88 HOH HOH . J 6 HOH A 24 524 24 HOH HOH . J 6 HOH A 25 525 137 HOH HOH . J 6 HOH A 26 526 139 HOH HOH . J 6 HOH A 27 527 128 HOH HOH . J 6 HOH A 28 528 61 HOH HOH . J 6 HOH A 29 529 127 HOH HOH . J 6 HOH A 30 530 106 HOH HOH . J 6 HOH A 31 531 83 HOH HOH . J 6 HOH A 32 532 73 HOH HOH . J 6 HOH A 33 533 64 HOH HOH . J 6 HOH A 34 534 134 HOH HOH . J 6 HOH A 35 535 10 HOH HOH . J 6 HOH A 36 536 49 HOH HOH . J 6 HOH A 37 537 154 HOH HOH . J 6 HOH A 38 538 77 HOH HOH . J 6 HOH A 39 539 113 HOH HOH . J 6 HOH A 40 540 124 HOH HOH . J 6 HOH A 41 541 100 HOH HOH . J 6 HOH A 42 542 67 HOH HOH . J 6 HOH A 43 543 14 HOH HOH . J 6 HOH A 44 544 59 HOH HOH . J 6 HOH A 45 545 17 HOH HOH . J 6 HOH A 46 546 22 HOH HOH . J 6 HOH A 47 547 131 HOH HOH . J 6 HOH A 48 548 25 HOH HOH . J 6 HOH A 49 549 90 HOH HOH . J 6 HOH A 50 550 11 HOH HOH . J 6 HOH A 51 551 99 HOH HOH . J 6 HOH A 52 552 125 HOH HOH . J 6 HOH A 53 553 27 HOH HOH . J 6 HOH A 54 554 51 HOH HOH . J 6 HOH A 55 555 98 HOH HOH . J 6 HOH A 56 556 30 HOH HOH . J 6 HOH A 57 557 78 HOH HOH . J 6 HOH A 58 558 122 HOH HOH . J 6 HOH A 59 559 93 HOH HOH . J 6 HOH A 60 560 149 HOH HOH . J 6 HOH A 61 561 44 HOH HOH . J 6 HOH A 62 562 143 HOH HOH . J 6 HOH A 63 563 36 HOH HOH . J 6 HOH A 64 564 153 HOH HOH . J 6 HOH A 65 565 76 HOH HOH . J 6 HOH A 66 566 116 HOH HOH . J 6 HOH A 67 567 68 HOH HOH . J 6 HOH A 68 568 152 HOH HOH . J 6 HOH A 69 569 105 HOH HOH . J 6 HOH A 70 570 95 HOH HOH . J 6 HOH A 71 571 148 HOH HOH . J 6 HOH A 72 572 46 HOH HOH . J 6 HOH A 73 573 130 HOH HOH . J 6 HOH A 74 574 102 HOH HOH . J 6 HOH A 75 575 101 HOH HOH . J 6 HOH A 76 576 132 HOH HOH . J 6 HOH A 77 577 121 HOH HOH . K 6 HOH B 1 501 6 HOH HOH . K 6 HOH B 2 502 136 HOH HOH . K 6 HOH B 3 503 81 HOH HOH . K 6 HOH B 4 504 147 HOH HOH . K 6 HOH B 5 505 26 HOH HOH . K 6 HOH B 6 506 19 HOH HOH . K 6 HOH B 7 507 2 HOH HOH . K 6 HOH B 8 508 35 HOH HOH . K 6 HOH B 9 509 8 HOH HOH . K 6 HOH B 10 510 85 HOH HOH . K 6 HOH B 11 511 15 HOH HOH . K 6 HOH B 12 512 70 HOH HOH . K 6 HOH B 13 513 28 HOH HOH . K 6 HOH B 14 514 13 HOH HOH . K 6 HOH B 15 515 97 HOH HOH . K 6 HOH B 16 516 71 HOH HOH . K 6 HOH B 17 517 141 HOH HOH . K 6 HOH B 18 518 47 HOH HOH . K 6 HOH B 19 519 82 HOH HOH . K 6 HOH B 20 520 50 HOH HOH . K 6 HOH B 21 521 65 HOH HOH . K 6 HOH B 22 522 3 HOH HOH . K 6 HOH B 23 523 34 HOH HOH . K 6 HOH B 24 524 156 HOH HOH . K 6 HOH B 25 525 58 HOH HOH . K 6 HOH B 26 526 33 HOH HOH . K 6 HOH B 27 527 118 HOH HOH . K 6 HOH B 28 528 7 HOH HOH . K 6 HOH B 29 529 60 HOH HOH . K 6 HOH B 30 530 109 HOH HOH . K 6 HOH B 31 531 92 HOH HOH . K 6 HOH B 32 532 23 HOH HOH . K 6 HOH B 33 533 54 HOH HOH . K 6 HOH B 34 534 80 HOH HOH . K 6 HOH B 35 535 155 HOH HOH . K 6 HOH B 36 536 89 HOH HOH . K 6 HOH B 37 537 31 HOH HOH . K 6 HOH B 38 538 117 HOH HOH . K 6 HOH B 39 539 56 HOH HOH . K 6 HOH B 40 540 20 HOH HOH . K 6 HOH B 41 541 112 HOH HOH . K 6 HOH B 42 542 38 HOH HOH . K 6 HOH B 43 543 18 HOH HOH . K 6 HOH B 44 544 75 HOH HOH . K 6 HOH B 45 545 29 HOH HOH . K 6 HOH B 46 546 151 HOH HOH . K 6 HOH B 47 547 57 HOH HOH . K 6 HOH B 48 548 111 HOH HOH . K 6 HOH B 49 549 145 HOH HOH . K 6 HOH B 50 550 140 HOH HOH . K 6 HOH B 51 551 4 HOH HOH . K 6 HOH B 52 552 40 HOH HOH . K 6 HOH B 53 553 66 HOH HOH . K 6 HOH B 54 554 107 HOH HOH . K 6 HOH B 55 555 37 HOH HOH . K 6 HOH B 56 556 79 HOH HOH . K 6 HOH B 57 557 69 HOH HOH . K 6 HOH B 58 558 86 HOH HOH . K 6 HOH B 59 559 62 HOH HOH . K 6 HOH B 60 560 94 HOH HOH . K 6 HOH B 61 561 150 HOH HOH . K 6 HOH B 62 562 52 HOH HOH . K 6 HOH B 63 563 108 HOH HOH . K 6 HOH B 64 564 72 HOH HOH . K 6 HOH B 65 565 43 HOH HOH . K 6 HOH B 66 566 126 HOH HOH . K 6 HOH B 67 567 41 HOH HOH . K 6 HOH B 68 568 119 HOH HOH . K 6 HOH B 69 569 144 HOH HOH . K 6 HOH B 70 570 129 HOH HOH . K 6 HOH B 71 571 146 HOH HOH . K 6 HOH B 72 572 115 HOH HOH . K 6 HOH B 73 573 16 HOH HOH . K 6 HOH B 74 574 9 HOH HOH . K 6 HOH B 75 575 142 HOH HOH . K 6 HOH B 76 576 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 3 -27.665 -1.326 5.423 1 30.94 ? PG ANP 402 B 1 HETATM 2 O O1G ANP . . . H 3 -28.038 -2.023 6.645 1 28.27 ? O1G ANP 402 B 1 HETATM 3 O O2G ANP . . . H 3 -26.201 -1.756 4.961 1 27.53 ? O2G ANP 402 B 1 HETATM 4 O O3G ANP . . . H 3 -28.726 -1.758 4.297 1 35.48 ? O3G ANP 402 B 1 HETATM 5 P PB ANP . . . H 3 -28.019 1.342 6.75 1 22.76 ? PB ANP 402 B 1 HETATM 6 O O1B ANP . . . H 3 -27.138 2.493 6.878 1 22.79 ? O1B ANP 402 B 1 HETATM 7 O O2B ANP . . . H 3 -28.077 0.51 8.091 1 18.92 ? O2B ANP 402 B 1 HETATM 8 N N3B ANP . . . H 3 -27.585 0.319 5.54 1 27.05 ? N3B ANP 402 B 1 HETATM 9 P PA ANP . . . H 3 -30.904 1.095 6.561 1 23.93 ? PA ANP 402 B 1 HETATM 10 O O1A ANP . . . H 3 -30.73 -0.338 6.895 1 21.17 ? O1A ANP 402 B 1 HETATM 11 O O2A ANP . . . H 3 -31.656 1.256 5.231 1 25.47 ? O2A ANP 402 B 1 HETATM 12 O O3A ANP . . . H 3 -29.495 1.831 6.428 1 24.69 ? O3A ANP 402 B 1 HETATM 13 O O5' ANP . . . H 3 -31.657 1.858 7.698 1 23.5 ? O5' ANP 402 B 1 HETATM 14 C C5' ANP . . . H 3 -31.674 3.294 7.762 1 24.38 ? C5' ANP 402 B 1 HETATM 15 C C4' ANP . . . H 3 -31.901 3.682 9.2 1 24.15 ? C4' ANP 402 B 1 HETATM 16 O O4' ANP . . . H 3 -33.169 3.164 9.645 1 21.66 ? O4' ANP 402 B 1 HETATM 17 C C3' ANP . . . H 3 -30.896 3.101 10.179 1 25.75 ? C3' ANP 402 B 1 HETATM 18 O O3' ANP . . . H 3 -29.716 3.899 10.206 1 30.08 ? O3' ANP 402 B 1 HETATM 19 C C2' ANP . . . H 3 -31.666 3.124 11.502 1 25.9 ? C2' ANP 402 B 1 HETATM 20 O O2' ANP . . . H 3 -31.429 4.306 12.254 1 28.48 ? O2' ANP 402 B 1 HETATM 21 C C1' ANP . . . H 3 -33.132 3.024 11.053 1 23.5 ? C1' ANP 402 B 1 HETATM 22 N N9 ANP . . . H 3 -33.782 1.77 11.428 1 21.24 ? N9 ANP 402 B 1 HETATM 23 C C8 ANP . . . H 3 -33.65 0.552 10.815 1 18.33 ? C8 ANP 402 B 1 HETATM 24 N N7 ANP . . . H 3 -34.328 -0.414 11.387 1 14.77 ? N7 ANP 402 B 1 HETATM 25 C C5 ANP . . . H 3 -34.954 0.211 12.455 1 15.17 ? C5 ANP 402 B 1 HETATM 26 C C6 ANP . . . H 3 -35.83 -0.264 13.459 1 16.31 ? C6 ANP 402 B 1 HETATM 27 N N6 ANP . . . H 3 -36.22 -1.541 13.57 1 14.32 ? N6 ANP 402 B 1 HETATM 28 N N1 ANP . . . H 3 -36.296 0.63 14.366 1 17.44 ? N1 ANP 402 B 1 HETATM 29 C C2 ANP . . . H 3 -35.896 1.906 14.277 1 16.65 ? C2 ANP 402 B 1 HETATM 30 N N3 ANP . . . H 3 -35.068 2.467 13.384 1 16.39 ? N3 ANP 402 B 1 HETATM 31 C C4 ANP . . . H 3 -34.631 1.561 12.491 1 18.34 ? C4 ANP 402 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #