data_7B3P # _model_server_result.job_id MX6AxXD0mN6DUGurBdfotA _model_server_result.datetime_utc '2024-11-23 15:16:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":509}' # _entry.id 7B3P # _exptl.entry_id 7B3P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B3P _cell.length_a 59.317 _cell.length_b 73.002 _cell.length_c 77.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomer _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 7B3P _atom_sites.fract_transf_matrix[1][1] 0.016859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 1455 SO4 SO4 . C 2 SO4 A 1 502 1456 SO4 SO4 . D 2 SO4 A 1 503 1457 SO4 SO4 . E 3 DMS A 1 504 1501 DMS DMS . F 4 EDO A 1 505 1901 EDO EDO . G 5 SUQ A 1 506 2301 SUQ XXX . H 3 DMS A 1 507 2401 DMS DMS . I 4 EDO A 1 509 2601 EDO EDO . J 2 SO4 A 1 510 1 SO4 SO4 . K 2 SO4 A 1 511 2 SO4 SO4 . L 2 SO4 A 1 512 3 SO4 SO4 . M 6 HOH A 1 601 85 HOH HOH . M 6 HOH A 2 602 226 HOH HOH . M 6 HOH A 3 603 30 HOH HOH . M 6 HOH A 4 604 15 HOH HOH . M 6 HOH A 5 605 111 HOH HOH . M 6 HOH A 6 606 57 HOH HOH . M 6 HOH A 7 607 125 HOH HOH . M 6 HOH A 8 608 116 HOH HOH . M 6 HOH A 9 609 107 HOH HOH . M 6 HOH A 10 610 211 HOH HOH . M 6 HOH A 11 611 87 HOH HOH . M 6 HOH A 12 612 70 HOH HOH . M 6 HOH A 13 613 218 HOH HOH . M 6 HOH A 14 614 27 HOH HOH . M 6 HOH A 15 615 67 HOH HOH . M 6 HOH A 16 616 128 HOH HOH . M 6 HOH A 17 617 242 HOH HOH . M 6 HOH A 18 618 64 HOH HOH . M 6 HOH A 19 619 239 HOH HOH . M 6 HOH A 20 620 183 HOH HOH . M 6 HOH A 21 621 11 HOH HOH . M 6 HOH A 22 622 9 HOH HOH . M 6 HOH A 23 623 44 HOH HOH . M 6 HOH A 24 624 244 HOH HOH . M 6 HOH A 25 625 121 HOH HOH . M 6 HOH A 26 626 109 HOH HOH . M 6 HOH A 27 627 40 HOH HOH . M 6 HOH A 28 628 222 HOH HOH . M 6 HOH A 29 629 77 HOH HOH . M 6 HOH A 30 630 233 HOH HOH . M 6 HOH A 31 631 4 HOH HOH . M 6 HOH A 32 632 120 HOH HOH . M 6 HOH A 33 633 231 HOH HOH . M 6 HOH A 34 634 60 HOH HOH . M 6 HOH A 35 635 221 HOH HOH . M 6 HOH A 36 636 106 HOH HOH . M 6 HOH A 37 637 99 HOH HOH . M 6 HOH A 38 638 245 HOH HOH . M 6 HOH A 39 639 65 HOH HOH . M 6 HOH A 40 640 240 HOH HOH . M 6 HOH A 41 641 215 HOH HOH . M 6 HOH A 42 642 25 HOH HOH . M 6 HOH A 43 643 37 HOH HOH . M 6 HOH A 44 644 101 HOH HOH . M 6 HOH A 45 645 13 HOH HOH . M 6 HOH A 46 646 18 HOH HOH . M 6 HOH A 47 647 6 HOH HOH . M 6 HOH A 48 648 48 HOH HOH . M 6 HOH A 49 649 142 HOH HOH . M 6 HOH A 50 650 52 HOH HOH . M 6 HOH A 51 651 54 HOH HOH . M 6 HOH A 52 652 34 HOH HOH . M 6 HOH A 53 653 14 HOH HOH . M 6 HOH A 54 654 71 HOH HOH . M 6 HOH A 55 655 7 HOH HOH . M 6 HOH A 56 656 26 HOH HOH . M 6 HOH A 57 657 86 HOH HOH . M 6 HOH A 58 658 235 HOH HOH . M 6 HOH A 59 659 62 HOH HOH . M 6 HOH A 60 660 216 HOH HOH . M 6 HOH A 61 661 113 HOH HOH . M 6 HOH A 62 662 43 HOH HOH . M 6 HOH A 63 663 243 HOH HOH . M 6 HOH A 64 664 82 HOH HOH . M 6 HOH A 65 665 241 HOH HOH . M 6 HOH A 66 666 12 HOH HOH . M 6 HOH A 67 667 61 HOH HOH . M 6 HOH A 68 668 95 HOH HOH . M 6 HOH A 69 669 119 HOH HOH . M 6 HOH A 70 670 17 HOH HOH . M 6 HOH A 71 671 96 HOH HOH . M 6 HOH A 72 672 8 HOH HOH . M 6 HOH A 73 673 230 HOH HOH . M 6 HOH A 74 674 161 HOH HOH . M 6 HOH A 75 675 83 HOH HOH . M 6 HOH A 76 676 72 HOH HOH . M 6 HOH A 77 677 36 HOH HOH . M 6 HOH A 78 678 217 HOH HOH . M 6 HOH A 79 679 112 HOH HOH . M 6 HOH A 80 680 234 HOH HOH . M 6 HOH A 81 681 56 HOH HOH . M 6 HOH A 82 682 214 HOH HOH . M 6 HOH A 83 683 105 HOH HOH . M 6 HOH A 84 684 236 HOH HOH . M 6 HOH A 85 685 141 HOH HOH . M 6 HOH A 86 686 110 HOH HOH . M 6 HOH A 87 687 2 HOH HOH . M 6 HOH A 88 688 50 HOH HOH . M 6 HOH A 89 689 114 HOH HOH . M 6 HOH A 90 690 117 HOH HOH . M 6 HOH A 91 691 16 HOH HOH . M 6 HOH A 92 692 124 HOH HOH . M 6 HOH A 93 693 88 HOH HOH . M 6 HOH A 94 694 59 HOH HOH . M 6 HOH A 95 695 232 HOH HOH . M 6 HOH A 96 696 75 HOH HOH . M 6 HOH A 97 697 229 HOH HOH . M 6 HOH A 98 698 66 HOH HOH . M 6 HOH A 99 699 237 HOH HOH . M 6 HOH A 100 700 29 HOH HOH . M 6 HOH A 101 701 213 HOH HOH . M 6 HOH A 102 702 220 HOH HOH . M 6 HOH A 103 703 219 HOH HOH . M 6 HOH A 104 704 131 HOH HOH . M 6 HOH A 105 705 238 HOH HOH . M 6 HOH A 106 706 118 HOH HOH . M 6 HOH A 107 707 199 HOH HOH . M 6 HOH A 108 708 32 HOH HOH . M 6 HOH A 109 709 45 HOH HOH . M 6 HOH A 110 710 39 HOH HOH . M 6 HOH A 111 711 146 HOH HOH . M 6 HOH A 112 712 144 HOH HOH . M 6 HOH A 113 713 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 4 13.209 78.243 80.718 1 32.94 ? C1 EDO 509 A 1 HETATM 2 O O1 EDO . . . I 4 12.537 79.51 80.622 1 34.71 ? O1 EDO 509 A 1 HETATM 3 C C2 EDO . . . I 4 12.881 77.585 82.052 1 26.82 ? C2 EDO 509 A 1 HETATM 4 O O2 EDO . . . I 4 11.472 77.528 82.226 1 41.48 ? O2 EDO 509 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #