data_7B3Z # _model_server_result.job_id QJyNqxrGWlIs2gZGkJn9Ow _model_server_result.datetime_utc '2025-01-16 00:01:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1402}' # _entry.id 7B3Z # _exptl.entry_id 7B3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.367 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[3-(phenylmethyl)-1~{H}-pyrrolo[2,3-b]pyridin-5-yl]-4,5-dihydro-1~{H}-pyrrolo[3,4-b]pyrrol-6-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.86 _cell.angle_gamma 90 _cell.entry_id 7B3Z _cell.length_a 109.88 _cell.length_b 42.45 _cell.length_c 85.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H16 N4 O' _chem_comp.formula_weight 328.367 _chem_comp.id SV8 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[3-(phenylmethyl)-1~{H}-pyrrolo[2,3-b]pyridin-5-yl]-4,5-dihydro-1~{H}-pyrrolo[3,4-b]pyrrol-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 SV8 doub 299 n y C C5 SV8 sing 300 n y C1 C2 SV8 sing 301 n y C5 C4 SV8 doub 302 n y C2 C3 SV8 doub 303 n y C4 C3 SV8 sing 304 n y C3 C6 SV8 sing 305 n n C8 C7 SV8 doub 306 n y C8 N SV8 sing 307 n y C6 C7 SV8 sing 308 n n C7 C10 SV8 sing 309 n y N C9 SV8 sing 310 n y C10 C9 SV8 doub 311 n y C10 C11 SV8 sing 312 n y C9 N1 SV8 sing 313 n y N1 C13 SV8 doub 314 n y C11 C12 SV8 doub 315 n y C13 C12 SV8 sing 316 n y C12 C14 SV8 sing 317 n n C15 C14 SV8 doub 318 n y C15 N2 SV8 sing 319 n y C14 C17 SV8 sing 320 n y N2 C16 SV8 sing 321 n y C17 C16 SV8 doub 322 n y C17 C18 SV8 sing 323 n n C16 C19 SV8 sing 324 n n C18 N3 SV8 sing 325 n n C19 N3 SV8 sing 326 n n C19 O SV8 doub 327 n n C1 H1 SV8 sing 328 n n C2 H2 SV8 sing 329 n n C8 H3 SV8 sing 330 n n C11 H4 SV8 sing 331 n n C13 H5 SV8 sing 332 n n C15 H6 SV8 sing 333 n n N2 H7 SV8 sing 334 n n C18 H8 SV8 sing 335 n n N H9 SV8 sing 336 n n C6 H10 SV8 sing 337 n n C6 H11 SV8 sing 338 n n C4 H12 SV8 sing 339 n n C5 H13 SV8 sing 340 n n C H14 SV8 sing 341 n n N3 H15 SV8 sing 342 n n C18 H16 SV8 sing 343 n n # _atom_sites.entry_id 7B3Z _atom_sites.fract_transf_matrix[1][1] 0.009101 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005438 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 1401 1 DMS DMS . C 3 SV8 A 1 1402 1 SV8 INH . D 4 HOH A 1 1501 19 HOH HOH . D 4 HOH A 2 1502 20 HOH HOH . D 4 HOH A 3 1503 2 HOH HOH . D 4 HOH A 4 1504 102 HOH HOH . D 4 HOH A 5 1505 72 HOH HOH . D 4 HOH A 6 1506 104 HOH HOH . D 4 HOH A 7 1507 1 HOH HOH . D 4 HOH A 8 1508 11 HOH HOH . D 4 HOH A 9 1509 8 HOH HOH . D 4 HOH A 10 1510 34 HOH HOH . D 4 HOH A 11 1511 23 HOH HOH . D 4 HOH A 12 1512 30 HOH HOH . D 4 HOH A 13 1513 109 HOH HOH . D 4 HOH A 14 1514 14 HOH HOH . D 4 HOH A 15 1515 139 HOH HOH . D 4 HOH A 16 1516 133 HOH HOH . D 4 HOH A 17 1517 113 HOH HOH . D 4 HOH A 18 1518 127 HOH HOH . D 4 HOH A 19 1519 27 HOH HOH . D 4 HOH A 20 1520 36 HOH HOH . D 4 HOH A 21 1521 12 HOH HOH . D 4 HOH A 22 1522 152 HOH HOH . D 4 HOH A 23 1523 48 HOH HOH . D 4 HOH A 24 1524 106 HOH HOH . D 4 HOH A 25 1525 142 HOH HOH . D 4 HOH A 26 1526 60 HOH HOH . D 4 HOH A 27 1527 61 HOH HOH . D 4 HOH A 28 1528 7 HOH HOH . D 4 HOH A 29 1529 6 HOH HOH . D 4 HOH A 30 1530 103 HOH HOH . D 4 HOH A 31 1531 50 HOH HOH . D 4 HOH A 32 1532 164 HOH HOH . D 4 HOH A 33 1533 47 HOH HOH . D 4 HOH A 34 1534 9 HOH HOH . D 4 HOH A 35 1535 99 HOH HOH . D 4 HOH A 36 1536 3 HOH HOH . D 4 HOH A 37 1537 25 HOH HOH . D 4 HOH A 38 1538 81 HOH HOH . D 4 HOH A 39 1539 166 HOH HOH . D 4 HOH A 40 1540 16 HOH HOH . D 4 HOH A 41 1541 5 HOH HOH . D 4 HOH A 42 1542 93 HOH HOH . D 4 HOH A 43 1543 97 HOH HOH . D 4 HOH A 44 1544 128 HOH HOH . D 4 HOH A 45 1545 51 HOH HOH . D 4 HOH A 46 1546 120 HOH HOH . D 4 HOH A 47 1547 116 HOH HOH . D 4 HOH A 48 1548 58 HOH HOH . D 4 HOH A 49 1549 62 HOH HOH . D 4 HOH A 50 1550 38 HOH HOH . D 4 HOH A 51 1551 145 HOH HOH . D 4 HOH A 52 1552 44 HOH HOH . D 4 HOH A 53 1553 28 HOH HOH . D 4 HOH A 54 1554 76 HOH HOH . D 4 HOH A 55 1555 96 HOH HOH . D 4 HOH A 56 1556 162 HOH HOH . D 4 HOH A 57 1557 10 HOH HOH . D 4 HOH A 58 1558 29 HOH HOH . D 4 HOH A 59 1559 71 HOH HOH . D 4 HOH A 60 1560 108 HOH HOH . D 4 HOH A 61 1561 88 HOH HOH . D 4 HOH A 62 1562 151 HOH HOH . D 4 HOH A 63 1563 49 HOH HOH . D 4 HOH A 64 1564 18 HOH HOH . D 4 HOH A 65 1565 125 HOH HOH . D 4 HOH A 66 1566 68 HOH HOH . D 4 HOH A 67 1567 83 HOH HOH . D 4 HOH A 68 1568 78 HOH HOH . D 4 HOH A 69 1569 24 HOH HOH . D 4 HOH A 70 1570 22 HOH HOH . D 4 HOH A 71 1571 45 HOH HOH . D 4 HOH A 72 1572 65 HOH HOH . D 4 HOH A 73 1573 52 HOH HOH . D 4 HOH A 74 1574 43 HOH HOH . D 4 HOH A 75 1575 144 HOH HOH . D 4 HOH A 76 1576 74 HOH HOH . D 4 HOH A 77 1577 17 HOH HOH . D 4 HOH A 78 1578 89 HOH HOH . D 4 HOH A 79 1579 37 HOH HOH . D 4 HOH A 80 1580 66 HOH HOH . D 4 HOH A 81 1581 87 HOH HOH . D 4 HOH A 82 1582 135 HOH HOH . D 4 HOH A 83 1583 101 HOH HOH . D 4 HOH A 84 1584 119 HOH HOH . D 4 HOH A 85 1585 131 HOH HOH . D 4 HOH A 86 1586 55 HOH HOH . D 4 HOH A 87 1587 15 HOH HOH . D 4 HOH A 88 1588 64 HOH HOH . D 4 HOH A 89 1589 13 HOH HOH . D 4 HOH A 90 1590 59 HOH HOH . D 4 HOH A 91 1591 26 HOH HOH . D 4 HOH A 92 1592 147 HOH HOH . D 4 HOH A 93 1593 85 HOH HOH . D 4 HOH A 94 1594 77 HOH HOH . D 4 HOH A 95 1595 100 HOH HOH . D 4 HOH A 96 1596 140 HOH HOH . D 4 HOH A 97 1597 90 HOH HOH . D 4 HOH A 98 1598 143 HOH HOH . D 4 HOH A 99 1599 80 HOH HOH . D 4 HOH A 100 1600 21 HOH HOH . D 4 HOH A 101 1601 40 HOH HOH . D 4 HOH A 102 1602 32 HOH HOH . D 4 HOH A 103 1603 57 HOH HOH . D 4 HOH A 104 1604 111 HOH HOH . D 4 HOH A 105 1605 84 HOH HOH . D 4 HOH A 106 1606 69 HOH HOH . D 4 HOH A 107 1607 33 HOH HOH . D 4 HOH A 108 1608 56 HOH HOH . D 4 HOH A 109 1609 167 HOH HOH . D 4 HOH A 110 1610 117 HOH HOH . D 4 HOH A 111 1611 98 HOH HOH . D 4 HOH A 112 1612 156 HOH HOH . D 4 HOH A 113 1613 149 HOH HOH . D 4 HOH A 114 1614 161 HOH HOH . D 4 HOH A 115 1615 163 HOH HOH . D 4 HOH A 116 1616 130 HOH HOH . D 4 HOH A 117 1617 67 HOH HOH . D 4 HOH A 118 1618 79 HOH HOH . D 4 HOH A 119 1619 123 HOH HOH . D 4 HOH A 120 1620 105 HOH HOH . D 4 HOH A 121 1621 41 HOH HOH . D 4 HOH A 122 1622 150 HOH HOH . D 4 HOH A 123 1623 54 HOH HOH . D 4 HOH A 124 1624 154 HOH HOH . D 4 HOH A 125 1625 153 HOH HOH . D 4 HOH A 126 1626 126 HOH HOH . D 4 HOH A 127 1627 95 HOH HOH . D 4 HOH A 128 1628 110 HOH HOH . D 4 HOH A 129 1629 63 HOH HOH . D 4 HOH A 130 1630 159 HOH HOH . D 4 HOH A 131 1631 138 HOH HOH . D 4 HOH A 132 1632 136 HOH HOH . D 4 HOH A 133 1633 94 HOH HOH . D 4 HOH A 134 1634 46 HOH HOH . D 4 HOH A 135 1635 121 HOH HOH . D 4 HOH A 136 1636 39 HOH HOH . D 4 HOH A 137 1637 35 HOH HOH . D 4 HOH A 138 1638 122 HOH HOH . D 4 HOH A 139 1639 91 HOH HOH . D 4 HOH A 140 1640 73 HOH HOH . D 4 HOH A 141 1641 115 HOH HOH . D 4 HOH A 142 1642 118 HOH HOH . D 4 HOH A 143 1643 155 HOH HOH . D 4 HOH A 144 1644 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SV8 . . . C 3 194.108 -34.659 80.356 1 43.5 ? C1 SV8 1402 A 1 HETATM 2 C C2 SV8 . . . C 3 194.477 -34.396 81.668 1 42.92 ? C2 SV8 1402 A 1 HETATM 3 C C3 SV8 . . . C 3 193.612 -33.733 82.528 1 40.24 ? C3 SV8 1402 A 1 HETATM 4 C C7 SV8 . . . C 3 195.129 -32.439 84.05 1 38.96 ? C7 SV8 1402 A 1 HETATM 5 C C8 SV8 . . . C 3 195.026 -31.084 83.93 1 34.82 ? C8 SV8 1402 A 1 HETATM 6 C C9 SV8 . . . C 3 197.182 -31.483 84.284 1 33.17 ? C9 SV8 1402 A 1 HETATM 7 C C10 SV8 . . . C 3 196.519 -32.712 84.276 1 38.58 ? C10 SV8 1402 A 1 HETATM 8 C C11 SV8 . . . C 3 197.293 -33.854 84.477 1 36.35 ? C11 SV8 1402 A 1 HETATM 9 C C12 SV8 . . . C 3 198.669 -33.708 84.666 1 33.66 ? C12 SV8 1402 A 1 HETATM 10 C C13 SV8 . . . C 3 199.205 -32.418 84.659 1 31.4 ? C13 SV8 1402 A 1 HETATM 11 C C14 SV8 . . . C 3 199.522 -34.897 84.903 1 37.38 ? C14 SV8 1402 A 1 HETATM 12 C C15 SV8 . . . C 3 199.098 -36.203 84.781 1 36.74 ? C15 SV8 1402 A 1 HETATM 13 C C16 SV8 . . . C 3 201.235 -36.304 85.424 1 36.23 ? C16 SV8 1402 A 1 HETATM 14 C C19 SV8 . . . C 3 202.646 -36.422 85.849 1 37.63 ? C19 SV8 1402 A 1 HETATM 15 O O SV8 . . . C 3 203.273 -37.456 86.036 1 42.59 ? O SV8 1402 A 1 HETATM 16 N N2 SV8 . . . C 3 200.121 -37.034 85.088 1 36.03 ? N2 SV8 1402 A 1 HETATM 17 N N3 SV8 . . . C 3 203.1 -35.122 85.988 1 38.69 ? N3 SV8 1402 A 1 HETATM 18 C C18 SV8 . . . C 3 202.099 -34.12 85.687 1 37.75 ? C18 SV8 1402 A 1 HETATM 19 C C17 SV8 . . . C 3 200.891 -34.941 85.32 1 36.4 ? C17 SV8 1402 A 1 HETATM 20 N N1 SV8 . . . C 3 198.495 -31.296 84.469 1 30.6 ? N1 SV8 1402 A 1 HETATM 21 N N SV8 . . . C 3 196.261 -30.498 84.071 1 32.57 ? N SV8 1402 A 1 HETATM 22 C C6 SV8 . . . C 3 194.014 -33.446 83.958 1 39.73 ? C6 SV8 1402 A 1 HETATM 23 C C4 SV8 . . . C 3 192.37 -33.336 82.045 1 41.17 ? C4 SV8 1402 A 1 HETATM 24 C C5 SV8 . . . C 3 192.002 -33.599 80.733 1 41.5 ? C5 SV8 1402 A 1 HETATM 25 C C SV8 . . . C 3 192.872 -34.259 79.888 1 42.78 ? C SV8 1402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #