data_7B4D # _model_server_result.job_id D8dTkEGpieSnFqQ4oswsxg _model_server_result.datetime_utc '2025-02-05 15:57:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 7B4D # _exptl.entry_id 7B4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.195 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R})-2-methyl-1-azabicyclo[2.2.2]octan-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.598 _cell.angle_gamma 90 _cell.entry_id 7B4D _cell.length_a 137.587 _cell.length_b 50.164 _cell.length_c 34.231 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetramer _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_758 -x+2,y,-z+3 -1 0 0 0 1 0 0 0 -1 270.51912 0 102.587447 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 31 A CYS 124 1_555 D C1 QNN . A QNN 302 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.804 ? covale ? covale2 A SG CYS 136 A CYS 229 1_555 E C1 QN8 . A QN8 303 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.846 ? covale ? covale3 A SG CYS 136 A CYS 229 1_555 F C1 QNN . A QNN 304 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.797 ? covale ? covale4 A SG CYS 184 A CYS 277 1_555 G C1 QNN . A QNN 305 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.733 ? metalc ? metalc1 A SG CYS 83 A CYS 176 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 A ND1 HIS 86 A HIS 179 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc3 A SG CYS 145 A CYS 238 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc4 A SG CYS 149 A CYS 242 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? hydrog WATSON-CRICK hydrog1 B N1 DG 3 C DG 3 1_555 B N3 DC 10 C DC 10 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 3 C DG 3 1_555 B O2 DC 10 C DC 10 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 3 C DG 3 1_555 B N4 DC 10 C DC 10 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 4 C DG 4 1_555 B N3 DC 9 C DC 9 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 4 C DG 4 1_555 B O2 DC 9 C DC 9 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 4 C DG 4 1_555 B N4 DC 9 C DC 9 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 5 C DC 5 1_555 B N1 DG 8 C DG 8 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 5 C DC 5 1_555 B O6 DG 8 C DG 8 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 5 C DC 5 1_555 B N2 DG 8 C DG 8 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 DA 6 C DA 6 1_555 B N3 DT 7 C DT 7 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N6 DA 6 C DA 6 1_555 B O4 DT 7 C DT 7 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DT 7 C DT 7 1_555 B N1 DA 6 C DA 6 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 DT 7 C DT 7 1_555 B N6 DA 6 C DA 6 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DG 8 C DG 8 1_555 B N3 DC 5 C DC 5 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N2 DG 8 C DG 8 1_555 B O2 DC 5 C DC 5 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O6 DG 8 C DG 8 1_555 B N4 DC 5 C DC 5 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DC 9 C DC 9 1_555 B N1 DG 4 C DG 4 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N4 DC 9 C DC 9 1_555 B O6 DG 4 C DG 4 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O2 DC 9 C DC 9 1_555 B N2 DG 4 C DG 4 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N3 DC 10 C DC 10 1_555 B N1 DG 3 C DG 3 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N4 DC 10 C DC 10 1_555 B O6 DG 3 C DG 3 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O2 DC 10 C DC 10 1_555 B N2 DG 3 C DG 3 2_758 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C8 H13 N O' _chem_comp.formula_weight 139.195 _chem_comp.id QN8 _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R})-2-methyl-1-azabicyclo[2.2.2]octan-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 QN8 sing 430 n n C5 C6 QN8 sing 431 n n C4 C8 QN8 sing 432 n n C4 C3 QN8 sing 433 n n C8 C7 QN8 sing 434 n n O1 C3 QN8 doub 435 n n C3 C2 QN8 sing 436 n n C6 N1 QN8 sing 437 n n C7 N1 QN8 sing 438 n n N1 C2 QN8 sing 439 n n C2 C1 QN8 sing 440 n n C1 H1 QN8 sing 441 n n C1 H2 QN8 sing 442 n n C1 H3 QN8 sing 443 n n C2 H4 QN8 sing 444 n n C4 H5 QN8 sing 445 n n C5 H6 QN8 sing 446 n n C5 H7 QN8 sing 447 n n C6 H8 QN8 sing 448 n n C6 H9 QN8 sing 449 n n C7 H10 QN8 sing 450 n n C7 H11 QN8 sing 451 n n C8 H12 QN8 sing 452 n n C8 H13 QN8 sing 453 n n # _atom_sites.entry_id 7B4D _atom_sites.fract_transf_matrix[1][1] 0.007268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00033 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 301 301 ZN ZN . D 4 QNN A 1 302 401 QNN MQL . E 5 QN8 A 1 303 402 QN8 MQK . F 4 QNN A 1 304 403 QNN MQL . G 4 QNN A 1 305 404 QNN MQL . H 6 FMT A 1 306 1 FMT FMT . I 6 FMT A 1 307 2 FMT FMT . J 6 FMT A 1 308 3 FMT FMT . K 7 HOH A 1 401 107 HOH HOH . K 7 HOH A 2 402 83 HOH HOH . K 7 HOH A 3 403 104 HOH HOH . K 7 HOH A 4 404 148 HOH HOH . K 7 HOH A 5 405 113 HOH HOH . K 7 HOH A 6 406 46 HOH HOH . K 7 HOH A 7 407 58 HOH HOH . K 7 HOH A 8 408 61 HOH HOH . K 7 HOH A 9 409 49 HOH HOH . K 7 HOH A 10 410 105 HOH HOH . K 7 HOH A 11 411 38 HOH HOH . K 7 HOH A 12 412 43 HOH HOH . K 7 HOH A 13 413 74 HOH HOH . K 7 HOH A 14 414 138 HOH HOH . K 7 HOH A 15 415 24 HOH HOH . K 7 HOH A 16 416 41 HOH HOH . K 7 HOH A 17 417 50 HOH HOH . K 7 HOH A 18 418 7 HOH HOH . K 7 HOH A 19 419 34 HOH HOH . K 7 HOH A 20 420 12 HOH HOH . K 7 HOH A 21 421 10 HOH HOH . K 7 HOH A 22 422 18 HOH HOH . K 7 HOH A 23 423 17 HOH HOH . K 7 HOH A 24 424 8 HOH HOH . K 7 HOH A 25 425 86 HOH HOH . K 7 HOH A 26 426 87 HOH HOH . K 7 HOH A 27 427 5 HOH HOH . K 7 HOH A 28 428 73 HOH HOH . K 7 HOH A 29 429 54 HOH HOH . K 7 HOH A 30 430 59 HOH HOH . K 7 HOH A 31 431 37 HOH HOH . K 7 HOH A 32 432 6 HOH HOH . K 7 HOH A 33 433 21 HOH HOH . K 7 HOH A 34 434 1 HOH HOH . K 7 HOH A 35 435 82 HOH HOH . K 7 HOH A 36 436 55 HOH HOH . K 7 HOH A 37 437 118 HOH HOH . K 7 HOH A 38 438 31 HOH HOH . K 7 HOH A 39 439 27 HOH HOH . K 7 HOH A 40 440 66 HOH HOH . K 7 HOH A 41 441 19 HOH HOH . K 7 HOH A 42 442 36 HOH HOH . K 7 HOH A 43 443 65 HOH HOH . K 7 HOH A 44 444 63 HOH HOH . K 7 HOH A 45 445 53 HOH HOH . K 7 HOH A 46 446 78 HOH HOH . K 7 HOH A 47 447 47 HOH HOH . K 7 HOH A 48 448 39 HOH HOH . K 7 HOH A 49 449 40 HOH HOH . K 7 HOH A 50 450 116 HOH HOH . K 7 HOH A 51 451 30 HOH HOH . K 7 HOH A 52 452 28 HOH HOH . K 7 HOH A 53 453 29 HOH HOH . K 7 HOH A 54 454 67 HOH HOH . K 7 HOH A 55 455 71 HOH HOH . K 7 HOH A 56 456 126 HOH HOH . K 7 HOH A 57 457 13 HOH HOH . K 7 HOH A 58 458 93 HOH HOH . K 7 HOH A 59 459 99 HOH HOH . K 7 HOH A 60 460 69 HOH HOH . K 7 HOH A 61 461 4 HOH HOH . K 7 HOH A 62 462 64 HOH HOH . K 7 HOH A 63 463 57 HOH HOH . K 7 HOH A 64 464 88 HOH HOH . K 7 HOH A 65 465 142 HOH HOH . K 7 HOH A 66 466 127 HOH HOH . K 7 HOH A 67 467 20 HOH HOH . K 7 HOH A 68 468 22 HOH HOH . K 7 HOH A 69 469 44 HOH HOH . K 7 HOH A 70 470 128 HOH HOH . K 7 HOH A 71 471 15 HOH HOH . K 7 HOH A 72 472 103 HOH HOH . K 7 HOH A 73 473 25 HOH HOH . K 7 HOH A 74 474 16 HOH HOH . K 7 HOH A 75 475 3 HOH HOH . K 7 HOH A 76 476 108 HOH HOH . K 7 HOH A 77 477 115 HOH HOH . K 7 HOH A 78 478 23 HOH HOH . K 7 HOH A 79 479 92 HOH HOH . K 7 HOH A 80 480 146 HOH HOH . K 7 HOH A 81 481 91 HOH HOH . K 7 HOH A 82 482 80 HOH HOH . K 7 HOH A 83 483 100 HOH HOH . K 7 HOH A 84 484 140 HOH HOH . K 7 HOH A 85 485 60 HOH HOH . K 7 HOH A 86 486 141 HOH HOH . K 7 HOH A 87 487 139 HOH HOH . K 7 HOH A 88 488 76 HOH HOH . K 7 HOH A 89 489 144 HOH HOH . K 7 HOH A 90 490 45 HOH HOH . K 7 HOH A 91 491 68 HOH HOH . K 7 HOH A 92 492 11 HOH HOH . K 7 HOH A 93 493 32 HOH HOH . K 7 HOH A 94 494 124 HOH HOH . K 7 HOH A 95 495 85 HOH HOH . K 7 HOH A 96 496 102 HOH HOH . K 7 HOH A 97 497 122 HOH HOH . K 7 HOH A 98 498 98 HOH HOH . K 7 HOH A 99 499 134 HOH HOH . K 7 HOH A 100 500 106 HOH HOH . K 7 HOH A 101 501 125 HOH HOH . K 7 HOH A 102 502 35 HOH HOH . K 7 HOH A 103 503 121 HOH HOH . K 7 HOH A 104 504 51 HOH HOH . K 7 HOH A 105 505 52 HOH HOH . K 7 HOH A 106 506 72 HOH HOH . K 7 HOH A 107 507 109 HOH HOH . K 7 HOH A 108 508 26 HOH HOH . K 7 HOH A 109 509 123 HOH HOH . K 7 HOH A 110 510 94 HOH HOH . K 7 HOH A 111 511 97 HOH HOH . K 7 HOH A 112 512 2 HOH HOH . K 7 HOH A 113 513 129 HOH HOH . K 7 HOH A 114 514 145 HOH HOH . K 7 HOH A 115 515 147 HOH HOH . K 7 HOH A 116 516 79 HOH HOH . K 7 HOH A 117 517 62 HOH HOH . K 7 HOH A 118 518 101 HOH HOH . K 7 HOH A 119 519 110 HOH HOH . K 7 HOH A 120 520 114 HOH HOH . K 7 HOH A 121 521 112 HOH HOH . K 7 HOH A 122 522 89 HOH HOH . K 7 HOH A 123 523 111 HOH HOH . K 7 HOH A 124 524 75 HOH HOH . K 7 HOH A 125 525 119 HOH HOH . K 7 HOH A 126 526 84 HOH HOH . K 7 HOH A 127 527 149 HOH HOH . K 7 HOH A 128 528 77 HOH HOH . K 7 HOH A 129 529 136 HOH HOH . K 7 HOH A 130 530 70 HOH HOH . K 7 HOH A 131 531 48 HOH HOH . K 7 HOH A 132 532 42 HOH HOH . K 7 HOH A 133 533 90 HOH HOH . K 7 HOH A 134 534 96 HOH HOH . K 7 HOH A 135 535 117 HOH HOH . K 7 HOH A 136 536 120 HOH HOH . K 7 HOH A 137 537 33 HOH HOH . K 7 HOH A 138 538 132 HOH HOH . K 7 HOH A 139 539 56 HOH HOH . K 7 HOH A 140 540 133 HOH HOH . L 7 HOH C 1 101 9 HOH HOH . L 7 HOH C 2 102 137 HOH HOH . L 7 HOH C 3 103 135 HOH HOH . L 7 HOH C 4 104 14 HOH HOH . L 7 HOH C 5 105 130 HOH HOH . L 7 HOH C 6 106 143 HOH HOH . L 7 HOH C 7 107 81 HOH HOH . L 7 HOH C 8 108 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QN8 . B . E 5 168.221 -6.18 36.344 0.29 36.69 ? C1 QN8 303 A 1 HETATM 2 C C2 QN8 . B . E 5 168.405 -6.063 34.839 0.29 40.73 ? C2 QN8 303 A 1 HETATM 3 C C3 QN8 . B . E 5 167.947 -4.736 34.21 0.29 40.93 ? C3 QN8 303 A 1 HETATM 4 C C4 QN8 . B . E 5 167.291 -4.957 32.84 0.29 44.35 ? C4 QN8 303 A 1 HETATM 5 C C5 QN8 . B . E 5 165.975 -5.773 33.054 0.29 43.12 ? C5 QN8 303 A 1 HETATM 6 C C6 QN8 . B . E 5 166.349 -6.922 34.047 0.29 39.94 ? C6 QN8 303 A 1 HETATM 7 C C7 QN8 . B . E 5 168.431 -7.202 32.784 0.29 42 ? C7 QN8 303 A 1 HETATM 8 C C8 QN8 . B . E 5 168.249 -5.86 32.063 0.29 39.91 ? C8 QN8 303 A 1 HETATM 9 N N1 QN8 . B . E 5 167.782 -7.185 34.201 0.29 40.78 ? N1 QN8 303 A 1 HETATM 10 O O1 QN8 . B . E 5 168.038 -3.613 34.606 0.29 46 ? O1 QN8 303 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #