data_7B4P # _model_server_result.job_id XVq9f6pzASoQdRE7viD3JA _model_server_result.datetime_utc '2024-10-11 20:28:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 7B4P # _exptl.entry_id 7B4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B4P _cell.length_a 41.79 _cell.length_b 109.593 _cell.length_c 122.598 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 AAA CYS 58 1_555 A SG CYS 146 AAA CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 58 BBB CYS 58 1_555 B SG CYS 146 BBB CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 C SG CYS 58 CCC CYS 58 1_555 C SG CYS 146 CCC CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 D SG CYS 58 DDD CYS 58 1_555 D SG CYS 146 DDD CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A ND1 HIS 51 AAA HIS 51 1_555 E CU CU . AAA CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 A NE2 HIS 53 AAA HIS 53 1_555 E CU CU . AAA CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc3 A ND1 HIS 69 AAA HIS 69 1_555 F ZN ZN . AAA ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc4 A ND1 HIS 77 AAA HIS 77 1_555 F ZN ZN . AAA ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 A ND1 HIS 86 AAA HIS 86 1_555 F ZN ZN . AAA ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 A OD1 ASP 89 AAA ASP 89 1_555 F ZN ZN . AAA ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc7 A NE2 HIS 126 AAA HIS 126 1_555 E CU CU . AAA CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc8 B ND1 HIS 51 BBB HIS 51 1_555 G CU CU . BBB CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc9 B NE2 HIS 53 BBB HIS 53 1_555 G CU CU . BBB CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 B ND1 HIS 69 BBB HIS 69 1_555 H ZN ZN . BBB ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc11 B ND1 HIS 77 BBB HIS 77 1_555 H ZN ZN . BBB ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc12 B ND1 HIS 86 BBB HIS 86 1_555 H ZN ZN . BBB ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc13 B OD1 ASP 89 BBB ASP 89 1_555 H ZN ZN . BBB ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 B NE2 HIS 126 BBB HIS 126 1_555 G CU CU . BBB CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc15 C ND1 HIS 51 CCC HIS 51 1_555 I CU CU . CCC CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc16 C NE2 HIS 53 CCC HIS 53 1_555 I CU CU . CCC CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc17 C ND1 HIS 69 CCC HIS 69 1_555 J ZN ZN . CCC ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc18 C ND1 HIS 77 CCC HIS 77 1_555 J ZN ZN . CCC ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc19 C ND1 HIS 86 CCC HIS 86 1_555 J ZN ZN . CCC ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc20 C OD1 ASP 89 CCC ASP 89 1_555 J ZN ZN . CCC ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc21 C NE2 HIS 126 CCC HIS 126 1_555 I CU CU . CCC CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc22 D ND1 HIS 51 DDD HIS 51 1_555 K CU CU . DDD CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc23 D NE2 HIS 53 DDD HIS 53 1_555 K CU CU . DDD CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc24 D ND1 HIS 69 DDD HIS 69 1_555 L ZN ZN . DDD ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc25 D ND1 HIS 77 DDD HIS 77 1_555 L ZN ZN . DDD ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc26 D ND1 HIS 86 DDD HIS 86 1_555 L ZN ZN . DDD ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc27 D OD1 ASP 89 DDD ASP 89 1_555 L ZN ZN . DDD ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc28 D NE2 HIS 126 DDD HIS 126 1_555 K CU CU . DDD CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7B4P _atom_sites.fract_transf_matrix[1][1] 0.023929 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CU AAA 1 201 4 CU CU . F 3 ZN AAA 1 202 3 ZN ZN . G 2 CU BBB 1 201 2 CU CU . H 3 ZN BBB 1 202 2 ZN ZN . I 2 CU CCC 1 201 1 CU CU . J 3 ZN CCC 1 202 4 ZN ZN . K 2 CU DDD 1 201 3 CU CU . L 3 ZN DDD 1 202 1 ZN ZN . M 4 HOH AAA 1 301 1 HOH HOH . M 4 HOH AAA 2 302 19 HOH HOH . M 4 HOH AAA 3 303 13 HOH HOH . M 4 HOH AAA 4 304 11 HOH HOH . M 4 HOH AAA 5 305 4 HOH HOH . M 4 HOH AAA 6 306 16 HOH HOH . M 4 HOH AAA 7 307 12 HOH HOH . N 4 HOH BBB 1 301 5 HOH HOH . N 4 HOH BBB 2 302 15 HOH HOH . N 4 HOH BBB 3 303 6 HOH HOH . N 4 HOH BBB 4 304 8 HOH HOH . O 4 HOH CCC 1 301 3 HOH HOH . O 4 HOH CCC 2 302 20 HOH HOH . O 4 HOH CCC 3 303 7 HOH HOH . O 4 HOH CCC 4 304 10 HOH HOH . P 4 HOH DDD 1 301 14 HOH HOH . P 4 HOH DDD 2 302 21 HOH HOH . P 4 HOH DDD 3 303 18 HOH HOH . P 4 HOH DDD 4 304 2 HOH HOH . P 4 HOH DDD 5 305 9 HOH HOH . P 4 HOH DDD 6 306 17 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 11.296 _atom_site.Cartn_y -9.158 _atom_site.Cartn_z 9.689 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.26 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 201 _atom_site.auth_asym_id BBB _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #