data_7B51 # _model_server_result.job_id SEORGyXn5Ypqt8qxEHTdKA _model_server_result.datetime_utc '2025-09-22 19:11:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 7B51 # _exptl.entry_id 7B51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B51 _cell.length_a 121.111 _cell.length_b 150.591 _cell.length_c 231.969 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 542 A CYS 528 1_555 E S2 BME . A BME 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc1 A OG1 THR 26 B THR 24 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc2 A OG1 THR 44 B THR 42 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc3 C O3G GTP . B GTP 201 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc4 C O1B GTP . B GTP 201 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 7B51 _atom_sites.fract_transf_matrix[1][1] 0.008257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP B 1 201 181 GTP GTP . D 4 MG B 1 202 182 MG MG . E 5 BME A 1 1101 1101 BME BME . F 6 HOH B 1 301 89 HOH HOH . F 6 HOH B 2 302 63 HOH HOH . F 6 HOH B 3 303 133 HOH HOH . F 6 HOH B 4 304 196 HOH HOH . F 6 HOH B 5 305 19 HOH HOH . F 6 HOH B 6 306 100 HOH HOH . F 6 HOH B 7 307 94 HOH HOH . F 6 HOH B 8 308 14 HOH HOH . F 6 HOH B 9 309 114 HOH HOH . F 6 HOH B 10 310 78 HOH HOH . F 6 HOH B 11 311 155 HOH HOH . F 6 HOH B 12 312 195 HOH HOH . F 6 HOH B 13 313 137 HOH HOH . F 6 HOH B 14 314 125 HOH HOH . F 6 HOH B 15 315 12 HOH HOH . F 6 HOH B 16 316 291 HOH HOH . F 6 HOH B 17 317 21 HOH HOH . F 6 HOH B 18 318 316 HOH HOH . F 6 HOH B 19 319 118 HOH HOH . F 6 HOH B 20 320 290 HOH HOH . F 6 HOH B 21 321 178 HOH HOH . F 6 HOH B 22 322 48 HOH HOH . F 6 HOH B 23 323 175 HOH HOH . F 6 HOH B 24 324 56 HOH HOH . F 6 HOH B 25 325 214 HOH HOH . G 6 HOH A 1 1201 208 HOH HOH . G 6 HOH A 2 1202 148 HOH HOH . G 6 HOH A 3 1203 2 HOH HOH . G 6 HOH A 4 1204 34 HOH HOH . G 6 HOH A 5 1205 28 HOH HOH . G 6 HOH A 6 1206 202 HOH HOH . G 6 HOH A 7 1207 31 HOH HOH . G 6 HOH A 8 1208 263 HOH HOH . G 6 HOH A 9 1209 43 HOH HOH . G 6 HOH A 10 1210 268 HOH HOH . G 6 HOH A 11 1211 315 HOH HOH . G 6 HOH A 12 1212 36 HOH HOH . G 6 HOH A 13 1213 176 HOH HOH . G 6 HOH A 14 1214 293 HOH HOH . G 6 HOH A 15 1215 151 HOH HOH . G 6 HOH A 16 1216 46 HOH HOH . G 6 HOH A 17 1217 110 HOH HOH . G 6 HOH A 18 1218 69 HOH HOH . G 6 HOH A 19 1219 7 HOH HOH . G 6 HOH A 20 1220 92 HOH HOH . G 6 HOH A 21 1221 55 HOH HOH . G 6 HOH A 22 1222 50 HOH HOH . G 6 HOH A 23 1223 30 HOH HOH . G 6 HOH A 24 1224 218 HOH HOH . G 6 HOH A 25 1225 4 HOH HOH . G 6 HOH A 26 1226 149 HOH HOH . G 6 HOH A 27 1227 26 HOH HOH . G 6 HOH A 28 1228 10 HOH HOH . G 6 HOH A 29 1229 298 HOH HOH . G 6 HOH A 30 1230 81 HOH HOH . G 6 HOH A 31 1231 86 HOH HOH . G 6 HOH A 32 1232 209 HOH HOH . G 6 HOH A 33 1233 282 HOH HOH . G 6 HOH A 34 1234 49 HOH HOH . G 6 HOH A 35 1235 101 HOH HOH . G 6 HOH A 36 1236 25 HOH HOH . G 6 HOH A 37 1237 22 HOH HOH . G 6 HOH A 38 1238 247 HOH HOH . G 6 HOH A 39 1239 161 HOH HOH . G 6 HOH A 40 1240 188 HOH HOH . G 6 HOH A 41 1241 210 HOH HOH . G 6 HOH A 42 1242 57 HOH HOH . G 6 HOH A 43 1243 73 HOH HOH . G 6 HOH A 44 1244 269 HOH HOH . G 6 HOH A 45 1245 321 HOH HOH . G 6 HOH A 46 1246 64 HOH HOH . G 6 HOH A 47 1247 141 HOH HOH . G 6 HOH A 48 1248 256 HOH HOH . G 6 HOH A 49 1249 168 HOH HOH . G 6 HOH A 50 1250 13 HOH HOH . G 6 HOH A 51 1251 241 HOH HOH . G 6 HOH A 52 1252 143 HOH HOH . G 6 HOH A 53 1253 27 HOH HOH . G 6 HOH A 54 1254 62 HOH HOH . G 6 HOH A 55 1255 212 HOH HOH . G 6 HOH A 56 1256 259 HOH HOH . G 6 HOH A 57 1257 67 HOH HOH . G 6 HOH A 58 1258 204 HOH HOH . G 6 HOH A 59 1259 18 HOH HOH . G 6 HOH A 60 1260 242 HOH HOH . G 6 HOH A 61 1261 165 HOH HOH . G 6 HOH A 62 1262 221 HOH HOH . G 6 HOH A 63 1263 160 HOH HOH . G 6 HOH A 64 1264 307 HOH HOH . G 6 HOH A 65 1265 115 HOH HOH . G 6 HOH A 66 1266 226 HOH HOH . G 6 HOH A 67 1267 61 HOH HOH . G 6 HOH A 68 1268 200 HOH HOH . G 6 HOH A 69 1269 24 HOH HOH . G 6 HOH A 70 1270 345 HOH HOH . G 6 HOH A 71 1271 70 HOH HOH . G 6 HOH A 72 1272 144 HOH HOH . G 6 HOH A 73 1273 8 HOH HOH . G 6 HOH A 74 1274 93 HOH HOH . G 6 HOH A 75 1275 225 HOH HOH . G 6 HOH A 76 1276 347 HOH HOH . G 6 HOH A 77 1277 180 HOH HOH . G 6 HOH A 78 1278 189 HOH HOH . G 6 HOH A 79 1279 109 HOH HOH . G 6 HOH A 80 1280 35 HOH HOH . G 6 HOH A 81 1281 228 HOH HOH . G 6 HOH A 82 1282 83 HOH HOH . G 6 HOH A 83 1283 157 HOH HOH . G 6 HOH A 84 1284 41 HOH HOH . G 6 HOH A 85 1285 39 HOH HOH . G 6 HOH A 86 1286 103 HOH HOH . G 6 HOH A 87 1287 146 HOH HOH . G 6 HOH A 88 1288 327 HOH HOH . G 6 HOH A 89 1289 257 HOH HOH . G 6 HOH A 90 1290 206 HOH HOH . G 6 HOH A 91 1291 51 HOH HOH . G 6 HOH A 92 1292 158 HOH HOH . G 6 HOH A 93 1293 90 HOH HOH . G 6 HOH A 94 1294 102 HOH HOH . G 6 HOH A 95 1295 340 HOH HOH . G 6 HOH A 96 1296 20 HOH HOH . G 6 HOH A 97 1297 121 HOH HOH . G 6 HOH A 98 1298 233 HOH HOH . G 6 HOH A 99 1299 186 HOH HOH . G 6 HOH A 100 1300 124 HOH HOH . G 6 HOH A 101 1301 284 HOH HOH . G 6 HOH A 102 1302 220 HOH HOH . G 6 HOH A 103 1303 106 HOH HOH . G 6 HOH A 104 1304 227 HOH HOH . G 6 HOH A 105 1305 179 HOH HOH . G 6 HOH A 106 1306 140 HOH HOH . G 6 HOH A 107 1307 119 HOH HOH . G 6 HOH A 108 1308 302 HOH HOH . G 6 HOH A 109 1309 84 HOH HOH . G 6 HOH A 110 1310 11 HOH HOH . G 6 HOH A 111 1311 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . E 5 -49.935 -27.167 -48.927 1 96.09 ? C1 BME 1101 A 1 HETATM 2 C C2 BME . . . E 5 -49.257 -27.71 -50.143 1 97.24 ? C2 BME 1101 A 1 HETATM 3 O O1 BME . . . E 5 -49.05 -27.044 -47.828 1 99.21 ? O1 BME 1101 A 1 HETATM 4 S S2 BME . . . E 5 -49.559 -26.608 -51.55 1 106.36 ? S2 BME 1101 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #