data_7B6F # _model_server_result.job_id pSmzSZiOZQiWsqg_f4IujA _model_server_result.datetime_utc '2024-12-02 12:09:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7B6F # _exptl.entry_id 7B6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.863 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(3~{S})-3-[(7-chloranyl-9~{H}-pyrimido[4,5-b]indol-4-yl)-methyl-amino]piperidin-1-yl]propanenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.408 _cell.angle_gamma 90 _cell.entry_id 7B6F _cell.length_a 57.692 _cell.length_b 63.191 _cell.length_c 132.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 190 A SER 215 1_555 A N PTR 191 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C PTR 191 A PTR 216 1_555 A N ILE 192 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C19 H21 Cl N6' _chem_comp.formula_weight 368.863 _chem_comp.id SZW _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(3~{S})-3-[(7-chloranyl-9~{H}-pyrimido[4,5-b]indol-4-yl)-methyl-amino]piperidin-1-yl]propanenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 N SZW sing 332 n n C12 C13 SZW sing 333 n n C12 N1 SZW sing 334 n n C15 N1 SZW sing 335 n n C15 C8 SZW sing 336 n n C17 N4 SZW doub 337 n y C17 N3 SZW sing 338 n y N4 C18 SZW sing 339 n y N3 C7 SZW doub 340 n y N C7 SZW sing 341 n n N C8 SZW sing 342 n n C18 N5 SZW sing 343 n y C18 C6 SZW doub 344 n y C7 C6 SZW sing 345 n y N5 C4 SZW sing 346 n y C6 C5 SZW sing 347 n y C4 C3 SZW doub 348 n y C4 C5 SZW sing 349 n y C3 C SZW sing 350 n y C5 C2 SZW doub 351 n y C13 C14 SZW sing 352 n n N1 C11 SZW sing 353 n n CL C SZW sing 354 n n C C1 SZW doub 355 n y C2 C1 SZW sing 356 n y C8 C9 SZW sing 357 n n C14 N2 SZW trip 358 n n C11 C10 SZW sing 359 n n C9 C10 SZW sing 360 n n C1 H1 SZW sing 361 n n C10 H2 SZW sing 362 n n C10 H3 SZW sing 363 n n C11 H4 SZW sing 364 n n C11 H5 SZW sing 365 n n C12 H6 SZW sing 366 n n C12 H7 SZW sing 367 n n C13 H8 SZW sing 368 n n C13 H9 SZW sing 369 n n C15 H10 SZW sing 370 n n C15 H11 SZW sing 371 n n C16 H12 SZW sing 372 n n C16 H13 SZW sing 373 n n C16 H14 SZW sing 374 n n C17 H15 SZW sing 375 n n C2 H16 SZW sing 376 n n C3 H17 SZW sing 377 n n C8 H18 SZW sing 378 n n C9 H19 SZW sing 379 n n C9 H20 SZW sing 380 n n N5 H22 SZW sing 381 n n # _atom_sites.entry_id 7B6F _atom_sites.fract_transf_matrix[1][1] 0.017333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002254 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SZW A 1 401 401 SZW C5S . C 3 EDO A 1 402 701 EDO EDO . D 3 EDO A 1 403 1001 EDO EDO . E 4 SO4 A 1 404 1002 SO4 SO4 . F 4 SO4 A 1 405 1003 SO4 SO4 . G 5 HOH A 1 501 14 HOH HOH . G 5 HOH A 2 502 184 HOH HOH . G 5 HOH A 3 503 183 HOH HOH . G 5 HOH A 4 504 35 HOH HOH . G 5 HOH A 5 505 216 HOH HOH . G 5 HOH A 6 506 192 HOH HOH . G 5 HOH A 7 507 29 HOH HOH . G 5 HOH A 8 508 96 HOH HOH . G 5 HOH A 9 509 32 HOH HOH . G 5 HOH A 10 510 214 HOH HOH . G 5 HOH A 11 511 197 HOH HOH . G 5 HOH A 12 512 78 HOH HOH . G 5 HOH A 13 513 213 HOH HOH . G 5 HOH A 14 514 88 HOH HOH . G 5 HOH A 15 515 3 HOH HOH . G 5 HOH A 16 516 144 HOH HOH . G 5 HOH A 17 517 153 HOH HOH . G 5 HOH A 18 518 123 HOH HOH . G 5 HOH A 19 519 125 HOH HOH . G 5 HOH A 20 520 67 HOH HOH . G 5 HOH A 21 521 118 HOH HOH . G 5 HOH A 22 522 70 HOH HOH . G 5 HOH A 23 523 38 HOH HOH . G 5 HOH A 24 524 128 HOH HOH . G 5 HOH A 25 525 39 HOH HOH . G 5 HOH A 26 526 95 HOH HOH . G 5 HOH A 27 527 164 HOH HOH . G 5 HOH A 28 528 165 HOH HOH . G 5 HOH A 29 529 57 HOH HOH . G 5 HOH A 30 530 15 HOH HOH . G 5 HOH A 31 531 1 HOH HOH . G 5 HOH A 32 532 203 HOH HOH . G 5 HOH A 33 533 130 HOH HOH . G 5 HOH A 34 534 7 HOH HOH . G 5 HOH A 35 535 117 HOH HOH . G 5 HOH A 36 536 73 HOH HOH . G 5 HOH A 37 537 101 HOH HOH . G 5 HOH A 38 538 102 HOH HOH . G 5 HOH A 39 539 218 HOH HOH . G 5 HOH A 40 540 55 HOH HOH . G 5 HOH A 41 541 127 HOH HOH . G 5 HOH A 42 542 31 HOH HOH . G 5 HOH A 43 543 30 HOH HOH . G 5 HOH A 44 544 60 HOH HOH . G 5 HOH A 45 545 109 HOH HOH . G 5 HOH A 46 546 44 HOH HOH . G 5 HOH A 47 547 136 HOH HOH . G 5 HOH A 48 548 155 HOH HOH . G 5 HOH A 49 549 25 HOH HOH . G 5 HOH A 50 550 75 HOH HOH . G 5 HOH A 51 551 71 HOH HOH . G 5 HOH A 52 552 166 HOH HOH . G 5 HOH A 53 553 187 HOH HOH . G 5 HOH A 54 554 40 HOH HOH . G 5 HOH A 55 555 137 HOH HOH . G 5 HOH A 56 556 69 HOH HOH . G 5 HOH A 57 557 151 HOH HOH . G 5 HOH A 58 558 142 HOH HOH . G 5 HOH A 59 559 50 HOH HOH . G 5 HOH A 60 560 11 HOH HOH . G 5 HOH A 61 561 4 HOH HOH . G 5 HOH A 62 562 48 HOH HOH . G 5 HOH A 63 563 16 HOH HOH . G 5 HOH A 64 564 81 HOH HOH . G 5 HOH A 65 565 46 HOH HOH . G 5 HOH A 66 566 133 HOH HOH . G 5 HOH A 67 567 65 HOH HOH . G 5 HOH A 68 568 174 HOH HOH . G 5 HOH A 69 569 63 HOH HOH . G 5 HOH A 70 570 134 HOH HOH . G 5 HOH A 71 571 41 HOH HOH . G 5 HOH A 72 572 224 HOH HOH . G 5 HOH A 73 573 141 HOH HOH . G 5 HOH A 74 574 45 HOH HOH . G 5 HOH A 75 575 84 HOH HOH . G 5 HOH A 76 576 42 HOH HOH . G 5 HOH A 77 577 138 HOH HOH . G 5 HOH A 78 578 152 HOH HOH . G 5 HOH A 79 579 173 HOH HOH . G 5 HOH A 80 580 93 HOH HOH . G 5 HOH A 81 581 58 HOH HOH . G 5 HOH A 82 582 10 HOH HOH . G 5 HOH A 83 583 79 HOH HOH . G 5 HOH A 84 584 66 HOH HOH . G 5 HOH A 85 585 5 HOH HOH . G 5 HOH A 86 586 110 HOH HOH . G 5 HOH A 87 587 28 HOH HOH . G 5 HOH A 88 588 171 HOH HOH . G 5 HOH A 89 589 51 HOH HOH . G 5 HOH A 90 590 156 HOH HOH . G 5 HOH A 91 591 108 HOH HOH . G 5 HOH A 92 592 98 HOH HOH . G 5 HOH A 93 593 13 HOH HOH . G 5 HOH A 94 594 215 HOH HOH . G 5 HOH A 95 595 2 HOH HOH . G 5 HOH A 96 596 87 HOH HOH . G 5 HOH A 97 597 195 HOH HOH . G 5 HOH A 98 598 59 HOH HOH . G 5 HOH A 99 599 103 HOH HOH . G 5 HOH A 100 600 119 HOH HOH . G 5 HOH A 101 601 176 HOH HOH . G 5 HOH A 102 602 74 HOH HOH . G 5 HOH A 103 603 145 HOH HOH . G 5 HOH A 104 604 33 HOH HOH . G 5 HOH A 105 605 105 HOH HOH . G 5 HOH A 106 606 36 HOH HOH . G 5 HOH A 107 607 99 HOH HOH . G 5 HOH A 108 608 206 HOH HOH . G 5 HOH A 109 609 124 HOH HOH . G 5 HOH A 110 610 223 HOH HOH . G 5 HOH A 111 611 135 HOH HOH . G 5 HOH A 112 612 120 HOH HOH . G 5 HOH A 113 613 100 HOH HOH . G 5 HOH A 114 614 26 HOH HOH . G 5 HOH A 115 615 8 HOH HOH . G 5 HOH A 116 616 179 HOH HOH . G 5 HOH A 117 617 49 HOH HOH . G 5 HOH A 118 618 196 HOH HOH . G 5 HOH A 119 619 20 HOH HOH . G 5 HOH A 120 620 116 HOH HOH . G 5 HOH A 121 621 72 HOH HOH . G 5 HOH A 122 622 54 HOH HOH . G 5 HOH A 123 623 52 HOH HOH . G 5 HOH A 124 624 62 HOH HOH . G 5 HOH A 125 625 61 HOH HOH . G 5 HOH A 126 626 139 HOH HOH . G 5 HOH A 127 627 47 HOH HOH . G 5 HOH A 128 628 147 HOH HOH . G 5 HOH A 129 629 129 HOH HOH . G 5 HOH A 130 630 161 HOH HOH . G 5 HOH A 131 631 56 HOH HOH . G 5 HOH A 132 632 209 HOH HOH . G 5 HOH A 133 633 22 HOH HOH . G 5 HOH A 134 634 104 HOH HOH . G 5 HOH A 135 635 23 HOH HOH . G 5 HOH A 136 636 132 HOH HOH . G 5 HOH A 137 637 53 HOH HOH . G 5 HOH A 138 638 181 HOH HOH . G 5 HOH A 139 639 149 HOH HOH . G 5 HOH A 140 640 122 HOH HOH . G 5 HOH A 141 641 106 HOH HOH . G 5 HOH A 142 642 112 HOH HOH . G 5 HOH A 143 643 131 HOH HOH . G 5 HOH A 144 644 126 HOH HOH . G 5 HOH A 145 645 158 HOH HOH . G 5 HOH A 146 646 12 HOH HOH . G 5 HOH A 147 647 140 HOH HOH . G 5 HOH A 148 648 114 HOH HOH . G 5 HOH A 149 649 193 HOH HOH . G 5 HOH A 150 650 68 HOH HOH . G 5 HOH A 151 651 222 HOH HOH . G 5 HOH A 152 652 143 HOH HOH . G 5 HOH A 153 653 115 HOH HOH . G 5 HOH A 154 654 219 HOH HOH . G 5 HOH A 155 655 18 HOH HOH . G 5 HOH A 156 656 189 HOH HOH . G 5 HOH A 157 657 111 HOH HOH . G 5 HOH A 158 658 162 HOH HOH . G 5 HOH A 159 659 86 HOH HOH . G 5 HOH A 160 660 208 HOH HOH . G 5 HOH A 161 661 211 HOH HOH . G 5 HOH A 162 662 34 HOH HOH . G 5 HOH A 163 663 82 HOH HOH . G 5 HOH A 164 664 150 HOH HOH . G 5 HOH A 165 665 217 HOH HOH . G 5 HOH A 166 666 199 HOH HOH . G 5 HOH A 167 667 191 HOH HOH . G 5 HOH A 168 668 9 HOH HOH . G 5 HOH A 169 669 77 HOH HOH . G 5 HOH A 170 670 83 HOH HOH . G 5 HOH A 171 671 178 HOH HOH . G 5 HOH A 172 672 80 HOH HOH . G 5 HOH A 173 673 169 HOH HOH . G 5 HOH A 174 674 146 HOH HOH . G 5 HOH A 175 675 221 HOH HOH . G 5 HOH A 176 676 24 HOH HOH . G 5 HOH A 177 677 17 HOH HOH . G 5 HOH A 178 678 157 HOH HOH . G 5 HOH A 179 679 167 HOH HOH . G 5 HOH A 180 680 76 HOH HOH . G 5 HOH A 181 681 1 HOH HOH . G 5 HOH A 182 682 172 HOH HOH . G 5 HOH A 183 683 154 HOH HOH . G 5 HOH A 184 684 207 HOH HOH . G 5 HOH A 185 685 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SZW . . . B 2 -9.051 2.229 31.768 1 37.41 ? N SZW 401 A 1 HETATM 2 C C SZW . . . B 2 -6.128 7.377 32.324 1 37.5 ? C SZW 401 A 1 HETATM 3 C C1 SZW . . . B 2 -5.794 6.04 32.439 1 32.74 ? C1 SZW 401 A 1 HETATM 4 C C10 SZW . . . B 2 -6.409 0.971 34.275 1 32.56 ? C10 SZW 401 A 1 HETATM 5 C C11 SZW . . . B 2 -5.292 0.862 33.25 1 33.83 ? C11 SZW 401 A 1 HETATM 6 C C12 SZW . . . B 2 -4.157 2.002 31.429 1 31.02 ? C12 SZW 401 A 1 HETATM 7 C C13 SZW . . . B 2 -2.864 2.148 32.236 1 30.88 ? C13 SZW 401 A 1 HETATM 8 C C14 SZW . . . B 2 -2.81 3.421 32.961 1 38.83 ? C14 SZW 401 A 1 HETATM 9 C C15 SZW . . . B 2 -6.605 1.885 31.539 1 31.68 ? C15 SZW 401 A 1 HETATM 10 C C16 SZW . . . B 2 -9.607 1.017 31.185 1 29.26 ? C16 SZW 401 A 1 HETATM 11 C C17 SZW . . . B 2 -11.988 4.205 31.655 1 28.2 ? C17 SZW 401 A 1 HETATM 12 C C18 SZW . . . B 2 -10.351 5.701 31.871 1 31.99 ? C18 SZW 401 A 1 HETATM 13 C C2 SZW . . . B 2 -6.774 5.072 32.364 1 26.07 ? C2 SZW 401 A 1 HETATM 14 C C3 SZW . . . B 2 -7.445 7.789 32.178 1 28.82 ? C3 SZW 401 A 1 HETATM 15 C C4 SZW . . . B 2 -8.43 6.801 32.112 1 28.91 ? C4 SZW 401 A 1 HETATM 16 C C5 SZW . . . B 2 -8.108 5.436 32.184 1 27.66 ? C5 SZW 401 A 1 HETATM 17 C C6 SZW . . . B 2 -9.377 4.698 32.003 1 26.35 ? C6 SZW 401 A 1 HETATM 18 C C7 SZW . . . B 2 -9.875 3.354 31.878 1 30.21 ? C7 SZW 401 A 1 HETATM 19 C C8 SZW . . . B 2 -7.774 2.088 32.489 1 37.73 ? C8 SZW 401 A 1 HETATM 20 C C9 SZW . . . B 2 -7.775 1.028 33.589 1 29.89 ? C9 SZW 401 A 1 HETATM 21 N N1 SZW . . . B 2 -5.351 1.966 32.284 1 31.81 ? N1 SZW 401 A 1 HETATM 22 N N2 SZW . . . B 2 -2.809 4.41 33.533 1 35.95 ? N2 SZW 401 A 1 HETATM 23 N N3 SZW . . . B 2 -11.191 3.133 31.725 1 31.01 ? N3 SZW 401 A 1 HETATM 24 N N4 SZW . . . B 2 -11.663 5.499 31.692 1 32.7 ? N4 SZW 401 A 1 HETATM 25 N N5 SZW . . . B 2 -9.782 6.942 31.928 1 26.16 ? N5 SZW 401 A 1 HETATM 26 CL CL SZW . . . B 2 -4.859 8.568 32.293 1 52 ? CL SZW 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #