data_7B6I # _model_server_result.job_id MmRg1HXOHPWisCPYhQ6oVg _model_server_result.datetime_utc '2024-11-15 08:30:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 7B6I # _exptl.entry_id 7B6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.22 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(3-fluoranylpyridin-2-yl)-1-methyl-piperazin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 97.082 _cell.angle_beta 91.436 _cell.angle_gamma 104.723 _cell.entry_id 7B6I _cell.length_a 58.19 _cell.length_b 58.426 _cell.length_c 74.229 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomer 1 author_and_software_defined_assembly 1 PISA monomer 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 F N3 O' _chem_comp.formula_weight 209.22 _chem_comp.id SZE _chem_comp.mon_nstd_flag . _chem_comp.name 4-(3-fluoranylpyridin-2-yl)-1-methyl-piperazin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(3-fluoropyridin-2-yl)-1-methylpiperazin-2-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C4 SZE doub 321 n n C N SZE sing 322 n n C4 N SZE sing 323 n n C4 C3 SZE sing 324 n n N C1 SZE sing 325 n n C3 N1 SZE sing 326 n n C1 C2 SZE sing 327 n n N1 C2 SZE sing 328 n n N1 C5 SZE sing 329 n n N2 C5 SZE doub 330 n y N2 C6 SZE sing 331 n y C5 C9 SZE sing 332 n y C6 C7 SZE doub 333 n y C9 F SZE sing 334 n n C9 C8 SZE doub 335 n y C7 C8 SZE sing 336 n y C6 H1 SZE sing 337 n n C7 H2 SZE sing 338 n n C8 H3 SZE sing 339 n n C2 H4 SZE sing 340 n n C2 H5 SZE sing 341 n n C1 H6 SZE sing 342 n n C1 H7 SZE sing 343 n n C3 H8 SZE sing 344 n n C3 H9 SZE sing 345 n n C H10 SZE sing 346 n n C H11 SZE sing 347 n n C H12 SZE sing 348 n n # _atom_sites.entry_id 7B6I _atom_sites.fract_transf_matrix[1][1] 0.017185 _atom_sites.fract_transf_matrix[1][2] 0.004516 _atom_sites.fract_transf_matrix[1][3] 0.001046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017697 _atom_sites.fract_transf_matrix[2][3] 0.002395 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CIT A 1 501 501 CIT CIT . D 3 SZE B 1 501 501 SZE LIG . E 4 IPA B 1 502 502 IPA IPA . F 5 HOH A 1 601 64 HOH HOH . F 5 HOH A 2 602 385 HOH HOH . F 5 HOH A 3 603 365 HOH HOH . F 5 HOH A 4 604 666 HOH HOH . F 5 HOH A 5 605 65 HOH HOH . F 5 HOH A 6 606 222 HOH HOH . F 5 HOH A 7 607 194 HOH HOH . F 5 HOH A 8 608 363 HOH HOH . F 5 HOH A 9 609 360 HOH HOH . F 5 HOH A 10 610 631 HOH HOH . F 5 HOH A 11 611 362 HOH HOH . F 5 HOH A 12 612 210 HOH HOH . F 5 HOH A 13 613 77 HOH HOH . F 5 HOH A 14 614 638 HOH HOH . F 5 HOH A 15 615 349 HOH HOH . F 5 HOH A 16 616 287 HOH HOH . F 5 HOH A 17 617 103 HOH HOH . F 5 HOH A 18 618 411 HOH HOH . F 5 HOH A 19 619 206 HOH HOH . F 5 HOH A 20 620 370 HOH HOH . F 5 HOH A 21 621 453 HOH HOH . F 5 HOH A 22 622 308 HOH HOH . F 5 HOH A 23 623 505 HOH HOH . F 5 HOH A 24 624 204 HOH HOH . F 5 HOH A 25 625 655 HOH HOH . F 5 HOH A 26 626 56 HOH HOH . F 5 HOH A 27 627 396 HOH HOH . F 5 HOH A 28 628 664 HOH HOH . F 5 HOH A 29 629 378 HOH HOH . F 5 HOH A 30 630 203 HOH HOH . F 5 HOH A 31 631 35 HOH HOH . F 5 HOH A 32 632 622 HOH HOH . F 5 HOH A 33 633 42 HOH HOH . F 5 HOH A 34 634 364 HOH HOH . F 5 HOH A 35 635 211 HOH HOH . F 5 HOH A 36 636 642 HOH HOH . F 5 HOH A 37 637 504 HOH HOH . F 5 HOH A 38 638 201 HOH HOH . F 5 HOH A 39 639 289 HOH HOH . F 5 HOH A 40 640 397 HOH HOH . F 5 HOH A 41 641 12 HOH HOH . F 5 HOH A 42 642 223 HOH HOH . F 5 HOH A 43 643 458 HOH HOH . F 5 HOH A 44 644 221 HOH HOH . F 5 HOH A 45 645 663 HOH HOH . F 5 HOH A 46 646 576 HOH HOH . F 5 HOH A 47 647 503 HOH HOH . F 5 HOH A 48 648 61 HOH HOH . F 5 HOH A 49 649 208 HOH HOH . F 5 HOH A 50 650 78 HOH HOH . F 5 HOH A 51 651 230 HOH HOH . F 5 HOH A 52 652 590 HOH HOH . F 5 HOH A 53 653 205 HOH HOH . F 5 HOH A 54 654 175 HOH HOH . F 5 HOH A 55 655 60 HOH HOH . F 5 HOH A 56 656 380 HOH HOH . F 5 HOH A 57 657 243 HOH HOH . F 5 HOH A 58 658 389 HOH HOH . F 5 HOH A 59 659 199 HOH HOH . F 5 HOH A 60 660 502 HOH HOH . F 5 HOH A 61 661 54 HOH HOH . F 5 HOH A 62 662 226 HOH HOH . F 5 HOH A 63 663 79 HOH HOH . F 5 HOH A 64 664 67 HOH HOH . F 5 HOH A 65 665 665 HOH HOH . F 5 HOH A 66 666 187 HOH HOH . F 5 HOH A 67 667 235 HOH HOH . F 5 HOH A 68 668 57 HOH HOH . F 5 HOH A 69 669 198 HOH HOH . F 5 HOH A 70 670 608 HOH HOH . F 5 HOH A 71 671 388 HOH HOH . F 5 HOH A 72 672 179 HOH HOH . F 5 HOH A 73 673 62 HOH HOH . F 5 HOH A 74 674 639 HOH HOH . F 5 HOH A 75 675 630 HOH HOH . F 5 HOH A 76 676 306 HOH HOH . F 5 HOH A 77 677 432 HOH HOH . F 5 HOH A 78 678 17 HOH HOH . F 5 HOH A 79 679 63 HOH HOH . F 5 HOH A 80 680 635 HOH HOH . F 5 HOH A 81 681 427 HOH HOH . F 5 HOH A 82 682 371 HOH HOH . F 5 HOH A 83 683 48 HOH HOH . F 5 HOH A 84 684 507 HOH HOH . F 5 HOH A 85 685 169 HOH HOH . F 5 HOH A 86 686 43 HOH HOH . F 5 HOH A 87 687 164 HOH HOH . F 5 HOH A 88 688 579 HOH HOH . F 5 HOH A 89 689 76 HOH HOH . F 5 HOH A 90 690 33 HOH HOH . F 5 HOH A 91 691 91 HOH HOH . F 5 HOH A 92 692 320 HOH HOH . F 5 HOH A 93 693 644 HOH HOH . F 5 HOH A 94 694 382 HOH HOH . F 5 HOH A 95 695 625 HOH HOH . F 5 HOH A 96 696 66 HOH HOH . F 5 HOH A 97 697 429 HOH HOH . F 5 HOH A 98 698 80 HOH HOH . F 5 HOH A 99 699 166 HOH HOH . F 5 HOH A 100 700 309 HOH HOH . F 5 HOH A 101 701 195 HOH HOH . F 5 HOH A 102 702 16 HOH HOH . F 5 HOH A 103 703 361 HOH HOH . F 5 HOH A 104 704 14 HOH HOH . F 5 HOH A 105 705 605 HOH HOH . F 5 HOH A 106 706 518 HOH HOH . F 5 HOH A 107 707 662 HOH HOH . F 5 HOH A 108 708 229 HOH HOH . F 5 HOH A 109 709 41 HOH HOH . F 5 HOH A 110 710 515 HOH HOH . F 5 HOH A 111 711 594 HOH HOH . F 5 HOH A 112 712 218 HOH HOH . F 5 HOH A 113 713 165 HOH HOH . F 5 HOH A 114 714 404 HOH HOH . F 5 HOH A 115 715 44 HOH HOH . F 5 HOH A 116 716 49 HOH HOH . F 5 HOH A 117 717 617 HOH HOH . F 5 HOH A 118 718 520 HOH HOH . F 5 HOH A 119 719 593 HOH HOH . F 5 HOH A 120 720 193 HOH HOH . F 5 HOH A 121 721 217 HOH HOH . F 5 HOH A 122 722 184 HOH HOH . F 5 HOH A 123 723 513 HOH HOH . F 5 HOH A 124 724 263 HOH HOH . F 5 HOH A 125 725 621 HOH HOH . F 5 HOH A 126 726 196 HOH HOH . G 5 HOH B 1 601 641 HOH HOH . G 5 HOH B 2 602 499 HOH HOH . G 5 HOH B 3 603 597 HOH HOH . G 5 HOH B 4 604 144 HOH HOH . G 5 HOH B 5 605 521 HOH HOH . G 5 HOH B 6 606 573 HOH HOH . G 5 HOH B 7 607 87 HOH HOH . G 5 HOH B 8 608 492 HOH HOH . G 5 HOH B 9 609 525 HOH HOH . G 5 HOH B 10 610 401 HOH HOH . G 5 HOH B 11 611 114 HOH HOH . G 5 HOH B 12 612 117 HOH HOH . G 5 HOH B 13 613 120 HOH HOH . G 5 HOH B 14 614 121 HOH HOH . G 5 HOH B 15 615 391 HOH HOH . G 5 HOH B 16 616 150 HOH HOH . G 5 HOH B 17 617 409 HOH HOH . G 5 HOH B 18 618 345 HOH HOH . G 5 HOH B 19 619 494 HOH HOH . G 5 HOH B 20 620 643 HOH HOH . G 5 HOH B 21 621 441 HOH HOH . G 5 HOH B 22 622 534 HOH HOH . G 5 HOH B 23 623 271 HOH HOH . G 5 HOH B 24 624 336 HOH HOH . G 5 HOH B 25 625 265 HOH HOH . G 5 HOH B 26 626 407 HOH HOH . G 5 HOH B 27 627 74 HOH HOH . G 5 HOH B 28 628 393 HOH HOH . G 5 HOH B 29 629 109 HOH HOH . G 5 HOH B 30 630 151 HOH HOH . G 5 HOH B 31 631 130 HOH HOH . G 5 HOH B 32 632 220 HOH HOH . G 5 HOH B 33 633 6 HOH HOH . G 5 HOH B 34 634 138 HOH HOH . G 5 HOH B 35 635 159 HOH HOH . G 5 HOH B 36 636 574 HOH HOH . G 5 HOH B 37 637 7 HOH HOH . G 5 HOH B 38 638 402 HOH HOH . G 5 HOH B 39 639 124 HOH HOH . G 5 HOH B 40 640 129 HOH HOH . G 5 HOH B 41 641 5 HOH HOH . G 5 HOH B 42 642 157 HOH HOH . G 5 HOH B 43 643 395 HOH HOH . G 5 HOH B 44 644 570 HOH HOH . G 5 HOH B 45 645 264 HOH HOH . G 5 HOH B 46 646 26 HOH HOH . G 5 HOH B 47 647 334 HOH HOH . G 5 HOH B 48 648 88 HOH HOH . G 5 HOH B 49 649 127 HOH HOH . G 5 HOH B 50 650 18 HOH HOH . G 5 HOH B 51 651 107 HOH HOH . G 5 HOH B 52 652 482 HOH HOH . G 5 HOH B 53 653 390 HOH HOH . G 5 HOH B 54 654 111 HOH HOH . G 5 HOH B 55 655 156 HOH HOH . G 5 HOH B 56 656 440 HOH HOH . G 5 HOH B 57 657 340 HOH HOH . G 5 HOH B 58 658 253 HOH HOH . G 5 HOH B 59 659 266 HOH HOH . G 5 HOH B 60 660 457 HOH HOH . G 5 HOH B 61 661 541 HOH HOH . G 5 HOH B 62 662 279 HOH HOH . G 5 HOH B 63 663 37 HOH HOH . G 5 HOH B 64 664 148 HOH HOH . G 5 HOH B 65 665 24 HOH HOH . G 5 HOH B 66 666 508 HOH HOH . G 5 HOH B 67 667 599 HOH HOH . G 5 HOH B 68 668 112 HOH HOH . G 5 HOH B 69 669 113 HOH HOH . G 5 HOH B 70 670 89 HOH HOH . G 5 HOH B 71 671 413 HOH HOH . G 5 HOH B 72 672 406 HOH HOH . G 5 HOH B 73 673 245 HOH HOH . G 5 HOH B 74 674 418 HOH HOH . G 5 HOH B 75 675 423 HOH HOH . G 5 HOH B 76 676 248 HOH HOH . G 5 HOH B 77 677 123 HOH HOH . G 5 HOH B 78 678 96 HOH HOH . G 5 HOH B 79 679 126 HOH HOH . G 5 HOH B 80 680 651 HOH HOH . G 5 HOH B 81 681 442 HOH HOH . G 5 HOH B 82 682 356 HOH HOH . G 5 HOH B 83 683 578 HOH HOH . G 5 HOH B 84 684 128 HOH HOH . G 5 HOH B 85 685 252 HOH HOH . G 5 HOH B 86 686 118 HOH HOH . G 5 HOH B 87 687 483 HOH HOH . G 5 HOH B 88 688 115 HOH HOH . G 5 HOH B 89 689 386 HOH HOH . G 5 HOH B 90 690 119 HOH HOH . G 5 HOH B 91 691 542 HOH HOH . G 5 HOH B 92 692 561 HOH HOH . G 5 HOH B 93 693 181 HOH HOH . G 5 HOH B 94 694 69 HOH HOH . G 5 HOH B 95 695 660 HOH HOH . G 5 HOH B 96 696 143 HOH HOH . G 5 HOH B 97 697 517 HOH HOH . G 5 HOH B 98 698 140 HOH HOH . G 5 HOH B 99 699 501 HOH HOH . G 5 HOH B 100 700 280 HOH HOH . G 5 HOH B 101 701 9 HOH HOH . G 5 HOH B 102 702 659 HOH HOH . G 5 HOH B 103 703 284 HOH HOH . G 5 HOH B 104 704 27 HOH HOH . G 5 HOH B 105 705 416 HOH HOH . G 5 HOH B 106 706 273 HOH HOH . G 5 HOH B 107 707 535 HOH HOH . G 5 HOH B 108 708 141 HOH HOH . G 5 HOH B 109 709 132 HOH HOH . G 5 HOH B 110 710 387 HOH HOH . G 5 HOH B 111 711 285 HOH HOH . G 5 HOH B 112 712 270 HOH HOH . G 5 HOH B 113 713 546 HOH HOH . G 5 HOH B 114 714 83 HOH HOH . G 5 HOH B 115 715 131 HOH HOH . G 5 HOH B 116 716 182 HOH HOH . G 5 HOH B 117 717 426 HOH HOH . G 5 HOH B 118 718 468 HOH HOH . G 5 HOH B 119 719 555 HOH HOH . G 5 HOH B 120 720 47 HOH HOH . G 5 HOH B 121 721 106 HOH HOH . G 5 HOH B 122 722 500 HOH HOH . G 5 HOH B 123 723 28 HOH HOH . G 5 HOH B 124 724 452 HOH HOH . G 5 HOH B 125 725 288 HOH HOH . G 5 HOH B 126 726 460 HOH HOH . G 5 HOH B 127 727 443 HOH HOH . G 5 HOH B 128 728 564 HOH HOH . G 5 HOH B 129 729 547 HOH HOH . G 5 HOH B 130 730 421 HOH HOH . G 5 HOH B 131 731 344 HOH HOH . G 5 HOH B 132 732 105 HOH HOH . G 5 HOH B 133 733 410 HOH HOH . G 5 HOH B 134 734 476 HOH HOH . G 5 HOH B 135 735 582 HOH HOH . G 5 HOH B 136 736 321 HOH HOH . G 5 HOH B 137 737 343 HOH HOH . G 5 HOH B 138 738 403 HOH HOH . G 5 HOH B 139 739 636 HOH HOH . G 5 HOH B 140 740 491 HOH HOH . G 5 HOH B 141 741 656 HOH HOH . G 5 HOH B 142 742 510 HOH HOH . G 5 HOH B 143 743 422 HOH HOH . G 5 HOH B 144 744 585 HOH HOH . G 5 HOH B 145 745 256 HOH HOH . G 5 HOH B 146 746 566 HOH HOH . G 5 HOH B 147 747 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SZE . . . D 3 -38.235 2.867 0.091 1 79.46 0 N1 SZE 501 B 1 HETATM 2 C C4 SZE . . . D 3 -37.77 3.271 -2.37 1 74.74 0 C4 SZE 501 B 1 HETATM 3 C C5 SZE . . . D 3 -39.249 2.348 1.07 1 78.11 0 C5 SZE 501 B 1 HETATM 4 C C6 SZE . . . D 3 -41.066 0.966 1.419 1 64.98 0 C6 SZE 501 B 1 HETATM 5 C C7 SZE . . . D 3 -40.82 0.846 2.778 1 65.96 0 C7 SZE 501 B 1 HETATM 6 C C8 SZE . . . D 3 -39.761 1.556 3.326 1 74.73 0 C8 SZE 501 B 1 HETATM 7 F F SZE . . . D 3 -38.031 3.134 3.124 1 92.7 0 F SZE 501 B 1 HETATM 8 C C9 SZE . . . D 3 -38.963 2.355 2.508 1 80.37 0 C9 SZE 501 B 1 HETATM 9 N N2 SZE . . . D 3 -40.35 1.678 0.561 1 60.54 0 N2 SZE 501 B 1 HETATM 10 C C2 SZE . . . D 3 -37.431 4.101 0.386 1 73.64 0 C2 SZE 501 B 1 HETATM 11 C C1 SZE . . . D 3 -36.328 4.299 -0.615 1 63.48 0 C1 SZE 501 B 1 HETATM 12 C C3 SZE . . . D 3 -38.722 2.687 -1.345 1 81.99 0 C3 SZE 501 B 1 HETATM 13 O O SZE . . . D 3 -37.801 2.845 -3.506 1 80.2 0 O SZE 501 B 1 HETATM 14 N N SZE . . . D 3 -36.881 4.288 -1.976 1 68.33 0 N SZE 501 B 1 HETATM 15 C C SZE . . . D 3 -36.074 4.947 -2.97 1 62.76 0 C SZE 501 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #