data_7B6Q # _model_server_result.job_id UNXVTGCceh4EaNPdcrn-SQ _model_server_result.datetime_utc '2024-11-12 21:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b6q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7B6Q # _exptl.entry_id 7B6Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 213.235 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(furan-2-yl)methyl]-1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96.99 _cell.angle_beta 91.82 _cell.angle_gamma 104.99 _cell.entry_id 7B6Q _cell.length_a 58.12 _cell.length_b 58.15 _cell.length_c 74.252 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B6Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H11 N3 O' _chem_comp.formula_weight 213.235 _chem_comp.id WZD _chem_comp.mon_nstd_flag . _chem_comp.name N-[(furan-2-yl)methyl]-1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAO CAN WZD doub 387 n y CAO CAP WZD sing 388 n y CAN OAM WZD sing 389 n y CAP CAL WZD doub 390 n y OAM CAL WZD sing 391 n y CAL CAK WZD sing 392 n n CAK NAJ WZD sing 393 n n NAJ CAH WZD sing 394 n n CAH NAG WZD doub 395 n y CAH NAI WZD sing 396 n y NAG CAE WZD sing 397 n y NAI CAF WZD sing 398 n y CAE CAF WZD doub 399 n y CAE CAD WZD sing 400 n y CAF CAA WZD sing 401 n y CAD CAC WZD doub 402 n y CAA CAB WZD doub 403 n y CAC CAB WZD sing 404 n y CAA HAA WZD sing 405 n n CAB HAB WZD sing 406 n n CAC HAC WZD sing 407 n n CAD HAD WZD sing 408 n n CAK HAL WZD sing 409 n n CAK HAK WZD sing 410 n n CAN HAN WZD sing 411 n n CAO HAO WZD sing 412 n n CAP HAP WZD sing 413 n n NAI HAI WZD sing 414 n n NAJ HAJ WZD sing 415 n n # _atom_sites.entry_id 7B6Q _atom_sites.fract_transf_matrix[1][1] 0.017206 _atom_sites.fract_transf_matrix[1][2] 0.004605 _atom_sites.fract_transf_matrix[1][3] 0.001177 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017802 _atom_sites.fract_transf_matrix[2][3] 0.002418 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WZD B 1 501 501 WZD LIG . D 3 IPA B 1 502 601 IPA IPA . E 4 HOH A 1 501 294 HOH HOH . E 4 HOH A 2 502 412 HOH HOH . E 4 HOH A 3 503 308 HOH HOH . E 4 HOH A 4 504 40 HOH HOH . E 4 HOH A 5 505 654 HOH HOH . E 4 HOH A 6 506 622 HOH HOH . E 4 HOH A 7 507 103 HOH HOH . E 4 HOH A 8 508 287 HOH HOH . E 4 HOH A 9 509 505 HOH HOH . E 4 HOH A 10 510 382 HOH HOH . E 4 HOH A 11 511 644 HOH HOH . E 4 HOH A 12 512 210 HOH HOH . E 4 HOH A 13 513 42 HOH HOH . E 4 HOH A 14 514 607 HOH HOH . E 4 HOH A 15 515 203 HOH HOH . E 4 HOH A 16 516 434 HOH HOH . E 4 HOH A 17 517 664 HOH HOH . E 4 HOH A 18 518 364 HOH HOH . E 4 HOH A 19 519 638 HOH HOH . E 4 HOH A 20 520 206 HOH HOH . E 4 HOH A 21 521 647 HOH HOH . E 4 HOH A 22 522 428 HOH HOH . E 4 HOH A 23 523 359 HOH HOH . E 4 HOH A 24 524 200 HOH HOH . E 4 HOH A 25 525 347 HOH HOH . E 4 HOH A 26 526 80 HOH HOH . E 4 HOH A 27 527 411 HOH HOH . E 4 HOH A 28 528 57 HOH HOH . E 4 HOH A 29 529 389 HOH HOH . E 4 HOH A 30 530 504 HOH HOH . E 4 HOH A 31 531 388 HOH HOH . E 4 HOH A 32 532 397 HOH HOH . E 4 HOH A 33 533 631 HOH HOH . E 4 HOH A 34 534 503 HOH HOH . E 4 HOH A 35 535 502 HOH HOH . E 4 HOH A 36 536 194 HOH HOH . E 4 HOH A 37 537 76 HOH HOH . E 4 HOH A 38 538 204 HOH HOH . E 4 HOH A 39 539 78 HOH HOH . E 4 HOH A 40 540 385 HOH HOH . E 4 HOH A 41 541 77 HOH HOH . E 4 HOH A 42 542 61 HOH HOH . E 4 HOH A 43 543 192 HOH HOH . E 4 HOH A 44 544 64 HOH HOH . E 4 HOH A 45 545 175 HOH HOH . E 4 HOH A 46 546 396 HOH HOH . E 4 HOH A 47 547 453 HOH HOH . E 4 HOH A 48 548 201 HOH HOH . E 4 HOH A 49 549 576 HOH HOH . E 4 HOH A 50 550 230 HOH HOH . E 4 HOH A 51 551 574 HOH HOH . E 4 HOH A 52 552 199 HOH HOH . E 4 HOH A 53 553 642 HOH HOH . E 4 HOH A 54 554 370 HOH HOH . E 4 HOH A 55 555 608 HOH HOH . E 4 HOH A 56 556 639 HOH HOH . E 4 HOH A 57 557 624 HOH HOH . E 4 HOH A 58 558 243 HOH HOH . E 4 HOH A 59 559 211 HOH HOH . E 4 HOH A 60 560 289 HOH HOH . E 4 HOH A 61 561 477 HOH HOH . E 4 HOH A 62 562 223 HOH HOH . E 4 HOH A 63 563 56 HOH HOH . E 4 HOH A 64 564 12 HOH HOH . E 4 HOH A 65 565 79 HOH HOH . E 4 HOH A 66 566 235 HOH HOH . E 4 HOH A 67 567 187 HOH HOH . E 4 HOH A 68 568 15 HOH HOH . E 4 HOH A 69 569 602 HOH HOH . E 4 HOH A 70 570 205 HOH HOH . E 4 HOH A 71 571 35 HOH HOH . E 4 HOH A 72 572 670 HOH HOH . E 4 HOH A 73 573 458 HOH HOH . E 4 HOH A 74 574 371 HOH HOH . E 4 HOH A 75 575 349 HOH HOH . E 4 HOH A 76 576 62 HOH HOH . E 4 HOH A 77 577 41 HOH HOH . E 4 HOH A 78 578 427 HOH HOH . E 4 HOH A 79 579 63 HOH HOH . E 4 HOH A 80 580 140 HOH HOH . E 4 HOH A 81 581 220 HOH HOH . E 4 HOH A 82 582 67 HOH HOH . E 4 HOH A 83 583 663 HOH HOH . E 4 HOH A 84 584 635 HOH HOH . E 4 HOH A 85 585 48 HOH HOH . E 4 HOH A 86 586 365 HOH HOH . E 4 HOH A 87 587 306 HOH HOH . E 4 HOH A 88 588 665 HOH HOH . E 4 HOH A 89 589 166 HOH HOH . E 4 HOH A 90 590 662 HOH HOH . E 4 HOH A 91 591 60 HOH HOH . E 4 HOH A 92 592 163 HOH HOH . E 4 HOH A 93 593 360 HOH HOH . E 4 HOH A 94 594 17 HOH HOH . E 4 HOH A 95 595 91 HOH HOH . E 4 HOH A 96 596 43 HOH HOH . E 4 HOH A 97 597 198 HOH HOH . E 4 HOH A 98 598 404 HOH HOH . E 4 HOH A 99 599 379 HOH HOH . E 4 HOH A 100 600 195 HOH HOH . E 4 HOH A 101 601 14 HOH HOH . E 4 HOH A 102 602 164 HOH HOH . E 4 HOH A 103 603 432 HOH HOH . E 4 HOH A 104 604 232 HOH HOH . E 4 HOH A 105 605 617 HOH HOH . E 4 HOH A 106 606 16 HOH HOH . E 4 HOH A 107 607 320 HOH HOH . E 4 HOH A 108 608 222 HOH HOH . E 4 HOH A 109 609 507 HOH HOH . E 4 HOH A 110 610 594 HOH HOH . E 4 HOH A 111 611 208 HOH HOH . E 4 HOH A 112 612 417 HOH HOH . E 4 HOH A 113 613 169 HOH HOH . E 4 HOH A 114 614 609 HOH HOH . E 4 HOH A 115 615 189 HOH HOH . E 4 HOH A 116 616 519 HOH HOH . E 4 HOH A 117 617 197 HOH HOH . E 4 HOH A 118 618 634 HOH HOH . E 4 HOH A 119 619 625 HOH HOH . E 4 HOH A 120 620 50 HOH HOH . E 4 HOH A 121 621 193 HOH HOH . E 4 HOH A 122 622 165 HOH HOH . E 4 HOH A 123 623 593 HOH HOH . E 4 HOH A 124 624 445 HOH HOH . E 4 HOH A 125 625 340 HOH HOH . E 4 HOH A 126 626 44 HOH HOH . E 4 HOH A 127 627 470 HOH HOH . E 4 HOH A 128 628 263 HOH HOH . E 4 HOH A 129 629 510 HOH HOH . E 4 HOH A 130 630 621 HOH HOH . E 4 HOH A 131 631 196 HOH HOH . F 4 HOH B 1 601 345 HOH HOH . F 4 HOH B 2 602 570 HOH HOH . F 4 HOH B 3 603 26 HOH HOH . F 4 HOH B 4 604 119 HOH HOH . F 4 HOH B 5 605 282 HOH HOH . F 4 HOH B 6 606 268 HOH HOH . F 4 HOH B 7 607 586 HOH HOH . F 4 HOH B 8 608 138 HOH HOH . F 4 HOH B 9 609 328 HOH HOH . F 4 HOH B 10 610 666 HOH HOH . F 4 HOH B 11 611 336 HOH HOH . F 4 HOH B 12 612 124 HOH HOH . F 4 HOH B 13 613 597 HOH HOH . F 4 HOH B 14 614 409 HOH HOH . F 4 HOH B 15 615 538 HOH HOH . F 4 HOH B 16 616 114 HOH HOH . F 4 HOH B 17 617 250 HOH HOH . F 4 HOH B 18 618 441 HOH HOH . F 4 HOH B 19 619 240 HOH HOH . F 4 HOH B 20 620 643 HOH HOH . F 4 HOH B 21 621 109 HOH HOH . F 4 HOH B 22 622 129 HOH HOH . F 4 HOH B 23 623 659 HOH HOH . F 4 HOH B 24 624 423 HOH HOH . F 4 HOH B 25 625 87 HOH HOH . F 4 HOH B 26 626 271 HOH HOH . F 4 HOH B 27 627 338 HOH HOH . F 4 HOH B 28 628 265 HOH HOH . F 4 HOH B 29 629 150 HOH HOH . F 4 HOH B 30 630 619 HOH HOH . F 4 HOH B 31 631 668 HOH HOH . F 4 HOH B 32 632 85 HOH HOH . F 4 HOH B 33 633 75 HOH HOH . F 4 HOH B 34 634 521 HOH HOH . F 4 HOH B 35 635 474 HOH HOH . F 4 HOH B 36 636 391 HOH HOH . F 4 HOH B 37 637 384 HOH HOH . F 4 HOH B 38 638 494 HOH HOH . F 4 HOH B 39 639 334 HOH HOH . F 4 HOH B 40 640 401 HOH HOH . F 4 HOH B 41 641 407 HOH HOH . F 4 HOH B 42 642 599 HOH HOH . F 4 HOH B 43 643 126 HOH HOH . F 4 HOH B 44 644 160 HOH HOH . F 4 HOH B 45 645 113 HOH HOH . F 4 HOH B 46 646 11 HOH HOH . F 4 HOH B 47 647 181 HOH HOH . F 4 HOH B 48 648 578 HOH HOH . F 4 HOH B 49 649 130 HOH HOH . F 4 HOH B 50 650 144 HOH HOH . F 4 HOH B 51 651 327 HOH HOH . F 4 HOH B 52 652 127 HOH HOH . F 4 HOH B 53 653 131 HOH HOH . F 4 HOH B 54 654 159 HOH HOH . F 4 HOH B 55 655 279 HOH HOH . F 4 HOH B 56 656 442 HOH HOH . F 4 HOH B 57 657 183 HOH HOH . F 4 HOH B 58 658 172 HOH HOH . F 4 HOH B 59 659 508 HOH HOH . F 4 HOH B 60 660 248 HOH HOH . F 4 HOH B 61 661 406 HOH HOH . F 4 HOH B 62 662 5 HOH HOH . F 4 HOH B 63 663 89 HOH HOH . F 4 HOH B 64 664 266 HOH HOH . F 4 HOH B 65 665 413 HOH HOH . F 4 HOH B 66 666 69 HOH HOH . F 4 HOH B 67 667 9 HOH HOH . F 4 HOH B 68 668 444 HOH HOH . F 4 HOH B 69 669 542 HOH HOH . F 4 HOH B 70 670 118 HOH HOH . F 4 HOH B 71 671 534 HOH HOH . F 4 HOH B 72 672 120 HOH HOH . F 4 HOH B 73 673 482 HOH HOH . F 4 HOH B 74 674 393 HOH HOH . F 4 HOH B 75 675 532 HOH HOH . F 4 HOH B 76 676 661 HOH HOH . F 4 HOH B 77 677 390 HOH HOH . F 4 HOH B 78 678 431 HOH HOH . F 4 HOH B 79 679 7 HOH HOH . F 4 HOH B 80 680 440 HOH HOH . F 4 HOH B 81 681 74 HOH HOH . F 4 HOH B 82 682 564 HOH HOH . F 4 HOH B 83 683 151 HOH HOH . F 4 HOH B 84 684 452 HOH HOH . F 4 HOH B 85 685 112 HOH HOH . F 4 HOH B 86 686 121 HOH HOH . F 4 HOH B 87 687 541 HOH HOH . F 4 HOH B 88 688 579 HOH HOH . F 4 HOH B 89 689 88 HOH HOH . F 4 HOH B 90 690 418 HOH HOH . F 4 HOH B 91 691 27 HOH HOH . F 4 HOH B 92 692 18 HOH HOH . F 4 HOH B 93 693 270 HOH HOH . F 4 HOH B 94 694 128 HOH HOH . F 4 HOH B 95 695 6 HOH HOH . F 4 HOH B 96 696 258 HOH HOH . F 4 HOH B 97 697 402 HOH HOH . F 4 HOH B 98 698 641 HOH HOH . F 4 HOH B 99 699 269 HOH HOH . F 4 HOH B 100 700 143 HOH HOH . F 4 HOH B 101 701 132 HOH HOH . F 4 HOH B 102 702 111 HOH HOH . F 4 HOH B 103 703 535 HOH HOH . F 4 HOH B 104 704 123 HOH HOH . F 4 HOH B 105 705 273 HOH HOH . F 4 HOH B 106 706 399 HOH HOH . F 4 HOH B 107 707 264 HOH HOH . F 4 HOH B 108 708 253 HOH HOH . F 4 HOH B 109 709 545 HOH HOH . F 4 HOH B 110 710 105 HOH HOH . F 4 HOH B 111 711 387 HOH HOH . F 4 HOH B 112 712 182 HOH HOH . F 4 HOH B 113 713 148 HOH HOH . F 4 HOH B 114 714 25 HOH HOH . F 4 HOH B 115 715 37 HOH HOH . F 4 HOH B 116 716 517 HOH HOH . F 4 HOH B 117 717 490 HOH HOH . F 4 HOH B 118 718 24 HOH HOH . F 4 HOH B 119 719 280 HOH HOH . F 4 HOH B 120 720 277 HOH HOH . F 4 HOH B 121 721 4 HOH HOH . F 4 HOH B 122 722 285 HOH HOH . F 4 HOH B 123 723 245 HOH HOH . F 4 HOH B 124 724 284 HOH HOH . F 4 HOH B 125 725 546 HOH HOH . F 4 HOH B 126 726 108 HOH HOH . F 4 HOH B 127 727 49 HOH HOH . F 4 HOH B 128 728 426 HOH HOH . F 4 HOH B 129 729 500 HOH HOH . F 4 HOH B 130 730 356 HOH HOH . F 4 HOH B 131 731 537 HOH HOH . F 4 HOH B 132 732 660 HOH HOH . F 4 HOH B 133 733 667 HOH HOH . F 4 HOH B 134 734 288 HOH HOH . F 4 HOH B 135 735 313 HOH HOH . F 4 HOH B 136 736 669 HOH HOH . F 4 HOH B 137 737 136 HOH HOH . F 4 HOH B 138 738 598 HOH HOH . F 4 HOH B 139 739 468 HOH HOH . F 4 HOH B 140 740 116 HOH HOH . F 4 HOH B 141 741 403 HOH HOH . F 4 HOH B 142 742 47 HOH HOH . F 4 HOH B 143 743 28 HOH HOH . F 4 HOH B 144 744 343 HOH HOH . F 4 HOH B 145 745 10 HOH HOH . F 4 HOH B 146 746 344 HOH HOH . F 4 HOH B 147 747 636 HOH HOH . F 4 HOH B 148 748 256 HOH HOH . F 4 HOH B 149 749 566 HOH HOH . F 4 HOH B 150 750 422 HOH HOH . F 4 HOH B 151 751 491 HOH HOH . F 4 HOH B 152 752 585 HOH HOH . F 4 HOH B 153 753 272 HOH HOH . F 4 HOH B 154 754 656 HOH HOH . F 4 HOH B 155 755 142 HOH HOH . F 4 HOH B 156 756 478 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA WZD . . . C 2 -39.01 5.934 4.413 1 49.11 ? CAA WZD 501 B 1 HETATM 2 C CAB WZD . . . C 2 -39.953 6.944 4.46 1 44.91 ? CAB WZD 501 B 1 HETATM 3 C CAC WZD . . . C 2 -40.024 7.96 3.485 1 44.1 ? CAC WZD 501 B 1 HETATM 4 C CAD WZD . . . C 2 -39.149 7.989 2.407 1 45.19 ? CAD WZD 501 B 1 HETATM 5 C CAE WZD . . . C 2 -38.178 6.981 2.329 1 43.58 ? CAE WZD 501 B 1 HETATM 6 C CAF WZD . . . C 2 -38.118 5.972 3.337 1 47.91 ? CAF WZD 501 B 1 HETATM 7 C CAH WZD . . . C 2 -36.491 5.682 1.827 1 44.52 ? CAH WZD 501 B 1 HETATM 8 C CAK WZD . . . C 2 -34.99 5.452 -0.131 1 47.72 ? CAK WZD 501 B 1 HETATM 9 C CAL WZD . . . C 2 -35.705 4.659 -1.152 1 43.36 ? CAL WZD 501 B 1 HETATM 10 C CAN WZD . . . C 2 -36.083 4.043 -3.215 1 41.86 ? CAN WZD 501 B 1 HETATM 11 C CAO WZD . . . C 2 -37.038 3.423 -2.453 1 41.32 ? CAO WZD 501 B 1 HETATM 12 C CAP WZD . . . C 2 -36.787 3.821 -1.099 1 42.33 ? CAP WZD 501 B 1 HETATM 13 N NAG WZD . . . C 2 -37.157 6.793 1.375 1 45.35 ? NAG WZD 501 B 1 HETATM 14 N NAI WZD . . . C 2 -37.043 5.153 3.012 1 45.19 ? NAI WZD 501 B 1 HETATM 15 N NAJ WZD . . . C 2 -35.356 5.079 1.25 1 50.75 ? NAJ WZD 501 B 1 HETATM 16 O OAM WZD . . . C 2 -35.251 4.803 -2.437 1 40.36 ? OAM WZD 501 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #