data_7B7H # _model_server_result.job_id UupDcOwe5kVPbJxI1giAdw _model_server_result.datetime_utc '2024-11-13 09:53:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":513}' # _entry.id 7B7H # _exptl.entry_id 7B7H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 61.947 _cell.angle_beta 67.92 _cell.angle_gamma 88.272 _cell.entry_id 7B7H _cell.length_a 47.333 _cell.length_b 47.298 _cell.length_c 51.112 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 239 A LEU 250 1_555 N NA NA . A NA 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc2 A O ASP 242 A ASP 253 1_555 N NA NA . A NA 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 A O VAL 245 A VAL 256 1_555 N NA NA . A NA 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A O HIS 292 A HIS 303 1_555 O NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc5 A O GLU 294 A GLU 305 1_555 O NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 N NA NA . A NA 513 1_555 Y O1 EDO . A EDO 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 N NA NA . A NA 513 1_555 EA OXT GLY . A GLY 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc8 O NA NA . A NA 514 1_555 FA O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc9 O NA NA . A NA 514 1_555 FA O HOH . A HOH 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc10 O NA NA . A NA 514 1_555 FA O HOH . A HOH 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7B7H _atom_sites.fract_transf_matrix[1][1] 0.021127 _atom_sites.fract_transf_matrix[1][2] -0.000637 _atom_sites.fract_transf_matrix[1][3] -0.009503 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021152 _atom_sites.fract_transf_matrix[2][3] -0.012066 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GCU A 1 501 501 GCU GCU . C 3 DMS A 1 502 1 DMS DMS . D 3 DMS A 1 503 2 DMS DMS . E 3 DMS A 1 504 3 DMS DMS . F 3 DMS A 1 505 5 DMS DMS . G 3 DMS A 1 506 6 DMS DMS . H 3 DMS A 1 507 7 DMS DMS . I 3 DMS A 1 508 8 DMS DMS . J 3 DMS A 1 509 9 DMS DMS . K 3 DMS A 1 510 10 DMS DMS . L 3 DMS A 1 511 11 DMS DMS . M 3 DMS A 1 512 12 DMS DMS . N 4 NA A 1 513 2 NA NA . O 4 NA A 1 514 3 NA NA . P 5 EDO A 1 515 2 EDO EDO . Q 5 EDO A 1 516 3 EDO EDO . R 5 EDO A 1 517 4 EDO EDO . S 5 EDO A 1 518 5 EDO EDO . T 5 EDO A 1 519 6 EDO EDO . U 5 EDO A 1 520 7 EDO EDO . V 5 EDO A 1 521 9 EDO EDO . W 5 EDO A 1 522 12 EDO EDO . X 5 EDO A 1 523 13 EDO EDO . Y 5 EDO A 1 524 15 EDO EDO . Z 5 EDO A 1 525 17 EDO EDO . AA 5 EDO A 1 526 18 EDO EDO . BA 6 GLY A 1 527 601 GLY GLY . CA 6 GLY A 1 528 701 GLY GLY . DA 6 GLY A 1 529 801 GLY GLY . EA 6 GLY A 1 530 901 GLY GLY . FA 7 HOH A 1 601 77 HOH HOH . FA 7 HOH A 2 602 74 HOH HOH . FA 7 HOH A 3 603 34 HOH HOH . FA 7 HOH A 4 604 53 HOH HOH . FA 7 HOH A 5 605 115 HOH HOH . FA 7 HOH A 6 606 109 HOH HOH . FA 7 HOH A 7 607 47 HOH HOH . FA 7 HOH A 8 608 126 HOH HOH . FA 7 HOH A 9 609 114 HOH HOH . FA 7 HOH A 10 610 72 HOH HOH . FA 7 HOH A 11 611 111 HOH HOH . FA 7 HOH A 12 612 122 HOH HOH . FA 7 HOH A 13 613 100 HOH HOH . FA 7 HOH A 14 614 61 HOH HOH . FA 7 HOH A 15 615 112 HOH HOH . FA 7 HOH A 16 616 55 HOH HOH . FA 7 HOH A 17 617 98 HOH HOH . FA 7 HOH A 18 618 10 HOH HOH . FA 7 HOH A 19 619 69 HOH HOH . FA 7 HOH A 20 620 57 HOH HOH . FA 7 HOH A 21 621 51 HOH HOH . FA 7 HOH A 22 622 49 HOH HOH . FA 7 HOH A 23 623 22 HOH HOH . FA 7 HOH A 24 624 40 HOH HOH . FA 7 HOH A 25 625 20 HOH HOH . FA 7 HOH A 26 626 96 HOH HOH . FA 7 HOH A 27 627 70 HOH HOH . FA 7 HOH A 28 628 36 HOH HOH . FA 7 HOH A 29 629 117 HOH HOH . FA 7 HOH A 30 630 16 HOH HOH . FA 7 HOH A 31 631 56 HOH HOH . FA 7 HOH A 32 632 44 HOH HOH . FA 7 HOH A 33 633 25 HOH HOH . FA 7 HOH A 34 634 12 HOH HOH . FA 7 HOH A 35 635 21 HOH HOH . FA 7 HOH A 36 636 45 HOH HOH . FA 7 HOH A 37 637 32 HOH HOH . FA 7 HOH A 38 638 3 HOH HOH . FA 7 HOH A 39 639 54 HOH HOH . FA 7 HOH A 40 640 5 HOH HOH . FA 7 HOH A 41 641 27 HOH HOH . FA 7 HOH A 42 642 37 HOH HOH . FA 7 HOH A 43 643 14 HOH HOH . FA 7 HOH A 44 644 58 HOH HOH . FA 7 HOH A 45 645 24 HOH HOH . FA 7 HOH A 46 646 93 HOH HOH . FA 7 HOH A 47 647 30 HOH HOH . FA 7 HOH A 48 648 82 HOH HOH . FA 7 HOH A 49 649 39 HOH HOH . FA 7 HOH A 50 650 60 HOH HOH . FA 7 HOH A 51 651 62 HOH HOH . FA 7 HOH A 52 652 41 HOH HOH . FA 7 HOH A 53 653 59 HOH HOH . FA 7 HOH A 54 654 125 HOH HOH . FA 7 HOH A 55 655 48 HOH HOH . FA 7 HOH A 56 656 46 HOH HOH . FA 7 HOH A 57 657 38 HOH HOH . FA 7 HOH A 58 658 63 HOH HOH . FA 7 HOH A 59 659 7 HOH HOH . FA 7 HOH A 60 660 13 HOH HOH . FA 7 HOH A 61 661 23 HOH HOH . FA 7 HOH A 62 662 33 HOH HOH . FA 7 HOH A 63 663 4 HOH HOH . FA 7 HOH A 64 664 31 HOH HOH . FA 7 HOH A 65 665 29 HOH HOH . FA 7 HOH A 66 666 9 HOH HOH . FA 7 HOH A 67 667 101 HOH HOH . FA 7 HOH A 68 668 83 HOH HOH . FA 7 HOH A 69 669 43 HOH HOH . FA 7 HOH A 70 670 28 HOH HOH . FA 7 HOH A 71 671 65 HOH HOH . FA 7 HOH A 72 672 18 HOH HOH . FA 7 HOH A 73 673 64 HOH HOH . FA 7 HOH A 74 674 102 HOH HOH . FA 7 HOH A 75 675 15 HOH HOH . FA 7 HOH A 76 676 73 HOH HOH . FA 7 HOH A 77 677 105 HOH HOH . FA 7 HOH A 78 678 6 HOH HOH . FA 7 HOH A 79 679 8 HOH HOH . FA 7 HOH A 80 680 107 HOH HOH . FA 7 HOH A 81 681 76 HOH HOH . FA 7 HOH A 82 682 11 HOH HOH . FA 7 HOH A 83 683 68 HOH HOH . FA 7 HOH A 84 684 88 HOH HOH . FA 7 HOH A 85 685 26 HOH HOH . FA 7 HOH A 86 686 52 HOH HOH . FA 7 HOH A 87 687 1 HOH HOH . FA 7 HOH A 88 688 66 HOH HOH . FA 7 HOH A 89 689 78 HOH HOH . FA 7 HOH A 90 690 35 HOH HOH . FA 7 HOH A 91 691 17 HOH HOH . FA 7 HOH A 92 692 19 HOH HOH . FA 7 HOH A 93 693 97 HOH HOH . FA 7 HOH A 94 694 67 HOH HOH . FA 7 HOH A 95 695 79 HOH HOH . FA 7 HOH A 96 696 42 HOH HOH . FA 7 HOH A 97 697 118 HOH HOH . FA 7 HOH A 98 698 90 HOH HOH . FA 7 HOH A 99 699 92 HOH HOH . FA 7 HOH A 100 700 71 HOH HOH . FA 7 HOH A 101 701 119 HOH HOH . FA 7 HOH A 102 702 2 HOH HOH . FA 7 HOH A 103 703 113 HOH HOH . FA 7 HOH A 104 704 50 HOH HOH . FA 7 HOH A 105 705 121 HOH HOH . FA 7 HOH A 106 706 123 HOH HOH . FA 7 HOH A 107 707 86 HOH HOH . FA 7 HOH A 108 708 120 HOH HOH . FA 7 HOH A 109 709 104 HOH HOH . FA 7 HOH A 110 710 94 HOH HOH . FA 7 HOH A 111 711 87 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 4 _atom_site.Cartn_x -0.559 _atom_site.Cartn_y 17.857 _atom_site.Cartn_z -11.137 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 513 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #