data_7B7N # _model_server_result.job_id Ekpd-DCSWmUMRqIev_TKDA _model_server_result.datetime_utc '2024-11-04 20:30:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":802}' # _entry.id 7B7N # _exptl.entry_id 7B7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B7N _cell.length_a 72.94 _cell.length_b 129 _cell.length_c 267.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 S N N ? 6 T N N ? 6 U N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG H 699 NAG 4 n D NAG 2 A 2 NAG H 700 NAG 4 n E NAG 1 B 1 NAG H 702 NAG 4 n E NAG 2 B 2 NAG H 703 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 E CYS 70 1_555 A SG CYS 166 E CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 83 E CYS 105 1_555 A SG CYS 93 E CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 92 H CYS 115 1_555 B SG CYS 314 H CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 277 H CYS 300 1_555 B SG CYS 332 H CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 452 H CYS 475 1_555 B SG CYS 479 H CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 534 H CYS 557 1_555 B SG CYS 586 H CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 611 H CYS 634 1_555 B SG CYS 614 H CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 C SG CYS 8 L CYS 26 1_555 C SG CYS 36 L CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 9 L CYS 27 1_555 C SG CYS 56 L CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 B ND2 ASN 23 H ASN 46 1_555 K C1 NAG . H NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 B ND2 ASN 244 H ASN 267 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 B ND2 ASN 665 H ASN 688 1_555 E C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 C ND2 ASN 100 L ASN 118 1_555 Q C1 NAG . L NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A O TRP 21 E TRP 43 1_555 J NA NA . E NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc2 B OG1 THR 52 H THR 75 1_555 U NA NA . L NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc3 B OE1 GLU 415 H GLU 438 1_555 O NA NA . H NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? metalc ? metalc4 C O PRO 7 L PRO 25 1_555 S NA NA . L NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7B7N _atom_sites.fract_transf_matrix[1][1] 0.01371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007752 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CL E 1 301 1 CL CL . G 5 CL E 1 302 2 CL CL . H 5 CL E 1 303 3 CL CL . I 6 NA E 1 304 2 NA NA . J 6 NA E 1 305 4 NA NA . K 7 NAG H 1 801 701 NAG NAG . L 6 NA H 1 802 1 NA NA . M 6 NA H 1 803 3 NA NA . N 6 NA H 1 804 5 NA NA . O 6 NA H 1 805 6 NA NA . P 6 NA H 1 806 7 NA NA . Q 7 NAG L 1 301 129 NAG NAG . R 5 CL L 1 302 4 CL CL . S 6 NA L 1 303 8 NA NA . T 6 NA L 1 304 9 NA NA . U 6 NA L 1 305 10 NA NA . V 8 HOH E 1 401 27 HOH HOH . V 8 HOH E 2 402 26 HOH HOH . V 8 HOH E 3 403 28 HOH HOH . V 8 HOH E 4 404 31 HOH HOH . V 8 HOH E 5 405 39 HOH HOH . V 8 HOH E 6 406 43 HOH HOH . V 8 HOH E 7 407 41 HOH HOH . V 8 HOH E 8 408 25 HOH HOH . V 8 HOH E 9 409 35 HOH HOH . V 8 HOH E 10 410 37 HOH HOH . V 8 HOH E 11 411 24 HOH HOH . V 8 HOH E 12 412 34 HOH HOH . V 8 HOH E 13 413 20 HOH HOH . V 8 HOH E 14 414 9 HOH HOH . V 8 HOH E 15 415 21 HOH HOH . W 8 HOH H 1 901 12 HOH HOH . W 8 HOH H 2 902 2 HOH HOH . W 8 HOH H 3 903 15 HOH HOH . W 8 HOH H 4 904 38 HOH HOH . W 8 HOH H 5 905 49 HOH HOH . W 8 HOH H 6 906 19 HOH HOH . W 8 HOH H 7 907 36 HOH HOH . W 8 HOH H 8 908 45 HOH HOH . W 8 HOH H 9 909 13 HOH HOH . W 8 HOH H 10 910 40 HOH HOH . W 8 HOH H 11 911 4 HOH HOH . W 8 HOH H 12 912 47 HOH HOH . W 8 HOH H 13 913 22 HOH HOH . W 8 HOH H 14 914 8 HOH HOH . W 8 HOH H 15 915 10 HOH HOH . W 8 HOH H 16 916 17 HOH HOH . W 8 HOH H 17 917 3 HOH HOH . W 8 HOH H 18 918 7 HOH HOH . W 8 HOH H 19 919 6 HOH HOH . W 8 HOH H 20 920 14 HOH HOH . W 8 HOH H 21 921 1 HOH HOH . W 8 HOH H 22 922 18 HOH HOH . X 8 HOH L 1 401 51 HOH HOH . X 8 HOH L 2 402 23 HOH HOH . X 8 HOH L 3 403 42 HOH HOH . X 8 HOH L 4 404 48 HOH HOH . X 8 HOH L 5 405 11 HOH HOH . X 8 HOH L 6 406 33 HOH HOH . X 8 HOH L 7 407 32 HOH HOH . X 8 HOH L 8 408 29 HOH HOH . X 8 HOH L 9 409 30 HOH HOH . X 8 HOH L 10 410 52 HOH HOH . X 8 HOH L 11 411 5 HOH HOH . X 8 HOH L 12 412 46 HOH HOH . X 8 HOH L 13 413 53 HOH HOH . X 8 HOH L 14 414 44 HOH HOH . X 8 HOH L 15 415 50 HOH HOH . X 8 HOH L 16 416 16 HOH HOH . X 8 HOH L 17 417 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 6 _atom_site.Cartn_x 12.265 _atom_site.Cartn_y 119.293 _atom_site.Cartn_z 90.028 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 802 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #