data_7B84 # _model_server_result.job_id SOylS-9n7gLXJHFIIuvarA _model_server_result.datetime_utc '2024-11-01 03:35:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":514}' # _entry.id 7B84 # _exptl.entry_id 7B84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.258 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-(1H-benzimidazol-1-yl)phenyl]methanol' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B84 _cell.length_a 60.044 _cell.length_b 73.143 _cell.length_c 78.492 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 O N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C14 H12 N2 O' _chem_comp.formula_weight 224.258 _chem_comp.id JFS _chem_comp.mon_nstd_flag . _chem_comp.name '[4-(1H-benzimidazol-1-yl)phenyl]methanol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 N07 JFS doub 191 n y C08 N09 JFS sing 192 n y C15 C14 JFS doub 193 n y C15 C10 JFS sing 194 n y N07 C05 JFS sing 195 n y C14 C13 JFS sing 196 n y O17 C16 JFS sing 197 n n N09 C10 JFS sing 198 n n N09 C04 JFS sing 199 n y C10 C11 JFS doub 200 n y C05 C04 JFS doub 201 n y C05 C06 JFS sing 202 n y C13 C16 JFS sing 203 n n C13 C12 JFS doub 204 n y C04 C03 JFS sing 205 n y C06 C01 JFS doub 206 n y C11 C12 JFS sing 207 n y C03 C02 JFS doub 208 n y C01 C02 JFS sing 209 n y C15 H151 JFS sing 210 n n C01 H011 JFS sing 211 n n C02 H021 JFS sing 212 n n C03 H031 JFS sing 213 n n C06 H061 JFS sing 214 n n C08 H081 JFS sing 215 n n C11 H111 JFS sing 216 n n C12 H121 JFS sing 217 n n C14 H141 JFS sing 218 n n C16 H162 JFS sing 219 n n C16 H161 JFS sing 220 n n O17 H171 JFS sing 221 n n # _atom_sites.entry_id 7B84 _atom_sites.fract_transf_matrix[1][1] 0.016655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 2 SO4 A 1 503 8 SO4 SO4 . E 2 SO4 A 1 504 9 SO4 SO4 . F 2 SO4 A 1 505 10 SO4 SO4 . G 2 SO4 A 1 506 12 SO4 SO4 . H 4 EDO A 1 507 4 EDO EDO . I 4 EDO A 1 508 9 EDO EDO . J 4 EDO A 1 509 12 EDO EDO . K 4 EDO A 1 510 13 EDO EDO . L 4 EDO A 1 511 14 EDO EDO . M 4 EDO A 1 512 17 EDO EDO . N 5 JFS A 1 513 1 JFS LIG . O 5 JFS A 1 514 2 JFS LIG . P 5 JFS A 1 515 3 JFS LIG . Q 6 DMS A 1 516 1 DMS DMS . R 6 DMS A 1 517 2 DMS DMS . S 6 DMS A 1 518 3 DMS DMS . T 6 DMS A 1 519 4 DMS DMS . U 6 DMS A 1 520 6 DMS DMS . V 7 HOH A 1 601 51 HOH HOH . V 7 HOH A 2 602 1007 HOH HOH . V 7 HOH A 3 603 43 HOH HOH . V 7 HOH A 4 604 1118 HOH HOH . V 7 HOH A 5 605 63 HOH HOH . V 7 HOH A 6 606 74 HOH HOH . V 7 HOH A 7 607 1043 HOH HOH . V 7 HOH A 8 608 1082 HOH HOH . V 7 HOH A 9 609 1123 HOH HOH . V 7 HOH A 10 610 25 HOH HOH . V 7 HOH A 11 611 32 HOH HOH . V 7 HOH A 12 612 1031 HOH HOH . V 7 HOH A 13 613 1196 HOH HOH . V 7 HOH A 14 614 36 HOH HOH . V 7 HOH A 15 615 1047 HOH HOH . V 7 HOH A 16 616 1033 HOH HOH . V 7 HOH A 17 617 1120 HOH HOH . V 7 HOH A 18 618 1046 HOH HOH . V 7 HOH A 19 619 1197 HOH HOH . V 7 HOH A 20 620 1027 HOH HOH . V 7 HOH A 21 621 1050 HOH HOH . V 7 HOH A 22 622 1190 HOH HOH . V 7 HOH A 23 623 1019 HOH HOH . V 7 HOH A 24 624 1052 HOH HOH . V 7 HOH A 25 625 1004 HOH HOH . V 7 HOH A 26 626 1003 HOH HOH . V 7 HOH A 27 627 50 HOH HOH . V 7 HOH A 28 628 1036 HOH HOH . V 7 HOH A 29 629 19 HOH HOH . V 7 HOH A 30 630 1045 HOH HOH . V 7 HOH A 31 631 40 HOH HOH . V 7 HOH A 32 632 1149 HOH HOH . V 7 HOH A 33 633 18 HOH HOH . V 7 HOH A 34 634 1001 HOH HOH . V 7 HOH A 35 635 1048 HOH HOH . V 7 HOH A 36 636 77 HOH HOH . V 7 HOH A 37 637 11 HOH HOH . V 7 HOH A 38 638 1169 HOH HOH . V 7 HOH A 39 639 1085 HOH HOH . V 7 HOH A 40 640 1087 HOH HOH . V 7 HOH A 41 641 1040 HOH HOH . V 7 HOH A 42 642 1065 HOH HOH . V 7 HOH A 43 643 1008 HOH HOH . V 7 HOH A 44 644 1054 HOH HOH . V 7 HOH A 45 645 1012 HOH HOH . V 7 HOH A 46 646 1073 HOH HOH . V 7 HOH A 47 647 1091 HOH HOH . V 7 HOH A 48 648 1062 HOH HOH . V 7 HOH A 49 649 79 HOH HOH . V 7 HOH A 50 650 1051 HOH HOH . V 7 HOH A 51 651 23 HOH HOH . V 7 HOH A 52 652 1068 HOH HOH . V 7 HOH A 53 653 1109 HOH HOH . V 7 HOH A 54 654 1016 HOH HOH . V 7 HOH A 55 655 57 HOH HOH . V 7 HOH A 56 656 1159 HOH HOH . V 7 HOH A 57 657 1059 HOH HOH . V 7 HOH A 58 658 12 HOH HOH . V 7 HOH A 59 659 56 HOH HOH . V 7 HOH A 60 660 81 HOH HOH . V 7 HOH A 61 661 1064 HOH HOH . V 7 HOH A 62 662 1057 HOH HOH . V 7 HOH A 63 663 71 HOH HOH . V 7 HOH A 64 664 17 HOH HOH . V 7 HOH A 65 665 34 HOH HOH . V 7 HOH A 66 666 1058 HOH HOH . V 7 HOH A 67 667 1023 HOH HOH . V 7 HOH A 68 668 1002 HOH HOH . V 7 HOH A 69 669 84 HOH HOH . V 7 HOH A 70 670 1029 HOH HOH . V 7 HOH A 71 671 22 HOH HOH . V 7 HOH A 72 672 1011 HOH HOH . V 7 HOH A 73 673 1063 HOH HOH . V 7 HOH A 74 674 1114 HOH HOH . V 7 HOH A 75 675 1020 HOH HOH . V 7 HOH A 76 676 13 HOH HOH . V 7 HOH A 77 677 1071 HOH HOH . V 7 HOH A 78 678 1041 HOH HOH . V 7 HOH A 79 679 1077 HOH HOH . V 7 HOH A 80 680 1038 HOH HOH . V 7 HOH A 81 681 26 HOH HOH . V 7 HOH A 82 682 35 HOH HOH . V 7 HOH A 83 683 1079 HOH HOH . V 7 HOH A 84 684 61 HOH HOH . V 7 HOH A 85 685 14 HOH HOH . V 7 HOH A 86 686 1142 HOH HOH . V 7 HOH A 87 687 1074 HOH HOH . V 7 HOH A 88 688 73 HOH HOH . V 7 HOH A 89 689 64 HOH HOH . V 7 HOH A 90 690 1005 HOH HOH . V 7 HOH A 91 691 1014 HOH HOH . V 7 HOH A 92 692 1198 HOH HOH . V 7 HOH A 93 693 1035 HOH HOH . V 7 HOH A 94 694 1037 HOH HOH . V 7 HOH A 95 695 1015 HOH HOH . V 7 HOH A 96 696 1006 HOH HOH . V 7 HOH A 97 697 1078 HOH HOH . V 7 HOH A 98 698 48 HOH HOH . V 7 HOH A 99 699 1124 HOH HOH . V 7 HOH A 100 700 1067 HOH HOH . V 7 HOH A 101 701 21 HOH HOH . V 7 HOH A 102 702 75 HOH HOH . V 7 HOH A 103 703 1093 HOH HOH . V 7 HOH A 104 704 1030 HOH HOH . V 7 HOH A 105 705 1081 HOH HOH . V 7 HOH A 106 706 7 HOH HOH . V 7 HOH A 107 707 1026 HOH HOH . V 7 HOH A 108 708 1199 HOH HOH . V 7 HOH A 109 709 1115 HOH HOH . V 7 HOH A 110 710 1039 HOH HOH . V 7 HOH A 111 711 1133 HOH HOH . V 7 HOH A 112 712 4 HOH HOH . V 7 HOH A 113 713 1042 HOH HOH . V 7 HOH A 114 714 30 HOH HOH . V 7 HOH A 115 715 68 HOH HOH . V 7 HOH A 116 716 1080 HOH HOH . V 7 HOH A 117 717 1180 HOH HOH . V 7 HOH A 118 718 1049 HOH HOH . V 7 HOH A 119 719 1083 HOH HOH . V 7 HOH A 120 720 1191 HOH HOH . V 7 HOH A 121 721 1106 HOH HOH . V 7 HOH A 122 722 62 HOH HOH . V 7 HOH A 123 723 82 HOH HOH . V 7 HOH A 124 724 78 HOH HOH . V 7 HOH A 125 725 5 HOH HOH . V 7 HOH A 126 726 76 HOH HOH . V 7 HOH A 127 727 60 HOH HOH . V 7 HOH A 128 728 83 HOH HOH . V 7 HOH A 129 729 59 HOH HOH . V 7 HOH A 130 730 42 HOH HOH . V 7 HOH A 131 731 1162 HOH HOH . V 7 HOH A 132 732 1129 HOH HOH . V 7 HOH A 133 733 1112 HOH HOH . V 7 HOH A 134 734 1152 HOH HOH . V 7 HOH A 135 735 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JFS . . . O 5 -0.735 -9.146 7.894 1 15.3 ? C10 JFS 514 A 1 HETATM 2 C C13 JFS . . . O 5 -1.073 -11.88 8.211 1 15.02 ? C13 JFS 514 A 1 HETATM 3 C C15 JFS . . . O 5 0.006 -10.021 7.125 1 15.83 ? C15 JFS 514 A 1 HETATM 4 C C01 JFS . . . O 5 -0.653 -4.812 4.887 1 16.67 ? C01 JFS 514 A 1 HETATM 5 C C02 JFS . . . O 5 -0.897 -6.111 4.439 1 14.26 ? C02 JFS 514 A 1 HETATM 6 C C03 JFS . . . O 5 -0.888 -7.184 5.304 1 13.94 ? C03 JFS 514 A 1 HETATM 7 C C04 JFS . . . O 5 -0.628 -6.921 6.644 1 15.03 ? C04 JFS 514 A 1 HETATM 8 C C05 JFS . . . O 5 -0.39 -5.621 7.104 1 14.07 ? C05 JFS 514 A 1 HETATM 9 C C06 JFS . . . O 5 -0.395 -4.552 6.212 1 15.62 ? C06 JFS 514 A 1 HETATM 10 N N07 JFS . . . O 5 -0.17 -5.642 8.478 1 14.56 ? N07 JFS 514 A 1 HETATM 11 C C08 JFS . . . O 5 -0.296 -6.891 8.833 1 15.44 ? C08 JFS 514 A 1 HETATM 12 N N09 JFS . . . O 5 -0.558 -7.73 7.779 1 13.74 ? N09 JFS 514 A 1 HETATM 13 C C11 JFS . . . O 5 -1.624 -9.628 8.833 1 18.48 ? C11 JFS 514 A 1 HETATM 14 C C12 JFS . . . O 5 -1.801 -10.991 8.978 1 17.97 ? C12 JFS 514 A 1 HETATM 15 C C14 JFS . . . O 5 -0.166 -11.386 7.288 1 15.93 ? C14 JFS 514 A 1 HETATM 16 C C16 JFS . . . O 5 -1.257 -13.364 8.394 1 17.35 ? C16 JFS 514 A 1 HETATM 17 O O17 JFS . . . O 5 -2.54 -13.687 8.911 1 17.21 ? O17 JFS 514 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #