data_7B87
#
_model_server_result.job_id            PI2j34n27uTfwA3ZMOzjfw 
_model_server_result.datetime_utc      '2024-11-22 21:08:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7b87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":512}' 
#
_entry.id    7B87 
#
_exptl.entry_id    7B87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7B87 
_cell.length_a            59.8 
_cell.length_b            73.162 
_cell.length_c            78.671 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7B87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 M C1 NAG . A NAG 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 287 n n 
C1 O1 NAG sing 288 n n 
C1 O5 NAG sing 289 n n 
C1 H1 NAG sing 290 n n 
C2 C3 NAG sing 291 n n 
C2 N2 NAG sing 292 n n 
C2 H2 NAG sing 293 n n 
C3 C4 NAG sing 294 n n 
C3 O3 NAG sing 295 n n 
C3 H3 NAG sing 296 n n 
C4 C5 NAG sing 297 n n 
C4 O4 NAG sing 298 n n 
C4 H4 NAG sing 299 n n 
C5 C6 NAG sing 300 n n 
C5 O5 NAG sing 301 n n 
C5 H5 NAG sing 302 n n 
C6 O6 NAG sing 303 n n 
C6 H61 NAG sing 304 n n 
C6 H62 NAG sing 305 n n 
C7 C8 NAG sing 306 n n 
C7 N2 NAG sing 307 n n 
C7 O7 NAG doub 308 n n 
C8 H81 NAG sing 309 n n 
C8 H82 NAG sing 310 n n 
C8 H83 NAG sing 311 n n 
N2 HN2 NAG sing 312 n n 
O1 HO1 NAG sing 313 n n 
O3 HO3 NAG sing 314 n n 
O4 HO4 NAG sing 315 n n 
O6 HO6 NAG sing 316 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7B87 
_atom_sites.fract_transf_matrix[1][1]    0.016722 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013668 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012711 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 501 501 DMS DMS . 
C 2 DMS A 1 502 502 DMS DMS . 
D 3 EDO A 1 503 552 EDO EDO . 
E 3 EDO A 1 504 556 EDO EDO . 
F 3 EDO A 1 505 558 EDO EDO . 
G 3 EDO A 1 506 560 EDO EDO . 
H 3 EDO A 1 507 561 EDO EDO . 
I 3 EDO A 1 508 562 EDO EDO . 
J 3 EDO A 1 509 563 EDO EDO . 
K 4 SO4 A 1 510 601 SO4 SO4 . 
L 4 SO4 A 1 511 602 SO4 SO4 . 
M 5 NAG A 1 512 1452 NAG NAG . 
N 6 JFV A 1 513 1501 JFV XXX . 
O 4 SO4 A 1 514 1 SO4 SO4 . 
P 7 HOH A 1 601 912 HOH HOH . 
P 7 HOH A 2 602 887 HOH HOH . 
P 7 HOH A 3 603 736 HOH HOH . 
P 7 HOH A 4 604 697 HOH HOH . 
P 7 HOH A 5 605 879 HOH HOH . 
P 7 HOH A 6 606 696 HOH HOH . 
P 7 HOH A 7 607 872 HOH HOH . 
P 7 HOH A 8 608 668 HOH HOH . 
P 7 HOH A 9 609 865 HOH HOH . 
P 7 HOH A 10 610 768 HOH HOH . 
P 7 HOH A 11 611 658 HOH HOH . 
P 7 HOH A 12 612 847 HOH HOH . 
P 7 HOH A 13 613 654 HOH HOH . 
P 7 HOH A 14 614 700 HOH HOH . 
P 7 HOH A 15 615 773 HOH HOH . 
P 7 HOH A 16 616 651 HOH HOH . 
P 7 HOH A 17 617 653 HOH HOH . 
P 7 HOH A 18 618 677 HOH HOH . 
P 7 HOH A 19 619 695 HOH HOH . 
P 7 HOH A 20 620 690 HOH HOH . 
P 7 HOH A 21 621 698 HOH HOH . 
P 7 HOH A 22 622 702 HOH HOH . 
P 7 HOH A 23 623 686 HOH HOH . 
P 7 HOH A 24 624 723 HOH HOH . 
P 7 HOH A 25 625 866 HOH HOH . 
P 7 HOH A 26 626 735 HOH HOH . 
P 7 HOH A 27 627 666 HOH HOH . 
P 7 HOH A 28 628 709 HOH HOH . 
P 7 HOH A 29 629 846 HOH HOH . 
P 7 HOH A 30 630 799 HOH HOH . 
P 7 HOH A 31 631 903 HOH HOH . 
P 7 HOH A 32 632 688 HOH HOH . 
P 7 HOH A 33 633 869 HOH HOH . 
P 7 HOH A 34 634 657 HOH HOH . 
P 7 HOH A 35 635 681 HOH HOH . 
P 7 HOH A 36 636 741 HOH HOH . 
P 7 HOH A 37 637 774 HOH HOH . 
P 7 HOH A 38 638 693 HOH HOH . 
P 7 HOH A 39 639 669 HOH HOH . 
P 7 HOH A 40 640 718 HOH HOH . 
P 7 HOH A 41 641 679 HOH HOH . 
P 7 HOH A 42 642 715 HOH HOH . 
P 7 HOH A 43 643 704 HOH HOH . 
P 7 HOH A 44 644 717 HOH HOH . 
P 7 HOH A 45 645 859 HOH HOH . 
P 7 HOH A 46 646 907 HOH HOH . 
P 7 HOH A 47 647 714 HOH HOH . 
P 7 HOH A 48 648 652 HOH HOH . 
P 7 HOH A 49 649 713 HOH HOH . 
P 7 HOH A 50 650 708 HOH HOH . 
P 7 HOH A 51 651 655 HOH HOH . 
P 7 HOH A 52 652 883 HOH HOH . 
P 7 HOH A 53 653 737 HOH HOH . 
P 7 HOH A 54 654 656 HOH HOH . 
P 7 HOH A 55 655 721 HOH HOH . 
P 7 HOH A 56 656 691 HOH HOH . 
P 7 HOH A 57 657 676 HOH HOH . 
P 7 HOH A 58 658 665 HOH HOH . 
P 7 HOH A 59 659 747 HOH HOH . 
P 7 HOH A 60 660 672 HOH HOH . 
P 7 HOH A 61 661 895 HOH HOH . 
P 7 HOH A 62 662 667 HOH HOH . 
P 7 HOH A 63 663 861 HOH HOH . 
P 7 HOH A 64 664 680 HOH HOH . 
P 7 HOH A 65 665 868 HOH HOH . 
P 7 HOH A 66 666 904 HOH HOH . 
P 7 HOH A 67 667 858 HOH HOH . 
P 7 HOH A 68 668 727 HOH HOH . 
P 7 HOH A 69 669 890 HOH HOH . 
P 7 HOH A 70 670 687 HOH HOH . 
P 7 HOH A 71 671 661 HOH HOH . 
P 7 HOH A 72 672 876 HOH HOH . 
P 7 HOH A 73 673 670 HOH HOH . 
P 7 HOH A 74 674 759 HOH HOH . 
P 7 HOH A 75 675 854 HOH HOH . 
P 7 HOH A 76 676 863 HOH HOH . 
P 7 HOH A 77 677 913 HOH HOH . 
P 7 HOH A 78 678 662 HOH HOH . 
P 7 HOH A 79 679 712 HOH HOH . 
P 7 HOH A 80 680 783 HOH HOH . 
P 7 HOH A 81 681 914 HOH HOH . 
P 7 HOH A 82 682 689 HOH HOH . 
P 7 HOH A 83 683 673 HOH HOH . 
P 7 HOH A 84 684 915 HOH HOH . 
P 7 HOH A 85 685 792 HOH HOH . 
P 7 HOH A 86 686 728 HOH HOH . 
P 7 HOH A 87 687 881 HOH HOH . 
P 7 HOH A 88 688 764 HOH HOH . 
P 7 HOH A 89 689 731 HOH HOH . 
P 7 HOH A 90 690 911 HOH HOH . 
P 7 HOH A 91 691 692 HOH HOH . 
P 7 HOH A 92 692 877 HOH HOH . 
P 7 HOH A 93 693 685 HOH HOH . 
P 7 HOH A 94 694 841 HOH HOH . 
P 7 HOH A 95 695 707 HOH HOH . 
P 7 HOH A 96 696 848 HOH HOH . 
P 7 HOH A 97 697 851 HOH HOH . 
P 7 HOH A 98 698 910 HOH HOH . 
P 7 HOH A 99 699 724 HOH HOH . 
P 7 HOH A 100 700 916 HOH HOH . 
P 7 HOH A 101 701 664 HOH HOH . 
P 7 HOH A 102 702 743 HOH HOH . 
P 7 HOH A 103 703 897 HOH HOH . 
P 7 HOH A 104 704 660 HOH HOH . 
P 7 HOH A 105 705 699 HOH HOH . 
P 7 HOH A 106 706 775 HOH HOH . 
P 7 HOH A 107 707 906 HOH HOH . 
P 7 HOH A 108 708 756 HOH HOH . 
P 7 HOH A 109 709 830 HOH HOH . 
P 7 HOH A 110 710 663 HOH HOH . 
P 7 HOH A 111 711 852 HOH HOH . 
P 7 HOH A 112 712 779 HOH HOH . 
P 7 HOH A 113 713 812 HOH HOH . 
P 7 HOH A 114 714 889 HOH HOH . 
P 7 HOH A 115 715 803 HOH HOH . 
P 7 HOH A 116 716 802 HOH HOH . 
P 7 HOH A 117 717 762 HOH HOH . 
P 7 HOH A 118 718 880 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . M 5 -3.932 21.461 -1.167 1 40.79 ? C1 NAG 512 A 1 
HETATM 2 C C2 NAG . . . M 5 -4.977 22.283 -1.928 1 51.66 ? C2 NAG 512 A 1 
HETATM 3 C C3 NAG . . . M 5 -6.357 22.125 -1.287 1 48.35 ? C3 NAG 512 A 1 
HETATM 4 C C4 NAG . . . M 5 -6.708 20.656 -1.092 1 49 ? C4 NAG 512 A 1 
HETATM 5 C C5 NAG . . . M 5 -5.586 19.941 -0.35 1 49.03 ? C5 NAG 512 A 1 
HETATM 6 C C6 NAG . . . M 5 -5.816 18.454 -0.212 1 52.93 ? C6 NAG 512 A 1 
HETATM 7 C C7 NAG . . . M 5 -4.539 24.401 -3.096 1 64.71 ? C7 NAG 512 A 1 
HETATM 8 C C8 NAG . . . M 5 -4.129 25.835 -2.943 1 66.65 ? C8 NAG 512 A 1 
HETATM 9 N N2 NAG . . . M 5 -4.596 23.686 -1.968 1 53.66 ? N2 NAG 512 A 1 
HETATM 10 O O3 NAG . . . M 5 -7.329 22.743 -2.121 1 59.28 ? O3 NAG 512 A 1 
HETATM 11 O O4 NAG . . . M 5 -7.908 20.54 -0.337 1 47 ? O4 NAG 512 A 1 
HETATM 12 O O5 NAG . . . M 5 -4.36 20.105 -1.074 1 45.95 ? O5 NAG 512 A 1 
HETATM 13 O O6 NAG . . . M 5 -5.827 17.81 -1.478 1 48.95 ? O6 NAG 512 A 1 
HETATM 14 O O7 NAG . . . M 5 -4.804 23.914 -4.19 1 64.62 ? O7 NAG 512 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#