data_7B87 # _model_server_result.job_id 4DkG45mW5XaPzUbSWBeNEw _model_server_result.datetime_utc '2024-11-13 04:59:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":513}' # _entry.id 7B87 # _exptl.entry_id 7B87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.258 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 2-(4-aminophenoxy)benzoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B87 _cell.length_a 59.8 _cell.length_b 73.162 _cell.length_c 78.671 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 M C1 NAG . A NAG 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C14 H13 N O3' _chem_comp.formula_weight 243.258 _chem_comp.id JFV _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 2-(4-aminophenoxy)benzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N18 C15 JFV sing 191 n n C08 C07 JFV doub 192 n y C08 C09 JFV sing 193 n y C14 C15 JFV doub 194 n y C14 C13 JFV sing 195 n y C15 C16 JFV sing 196 n y C07 C06 JFV sing 197 n y C09 C10 JFV doub 198 n y C13 C12 JFV doub 199 n y C16 C17 JFV doub 200 n y C12 C17 JFV sing 201 n y C12 O11 JFV sing 202 n n C06 C05 JFV doub 203 n y C10 O11 JFV sing 204 n n C10 C05 JFV sing 205 n y C05 C03 JFV sing 206 n n C03 O04 JFV doub 207 n n C03 O02 JFV sing 208 n n O02 C01 JFV sing 209 n n C13 H131 JFV sing 210 n n C17 H171 JFV sing 211 n n C01 H011 JFV sing 212 n n C01 H012 JFV sing 213 n n C01 H013 JFV sing 214 n n C06 H061 JFV sing 215 n n C07 H071 JFV sing 216 n n C08 H081 JFV sing 217 n n C09 H091 JFV sing 218 n n C14 H141 JFV sing 219 n n C16 H161 JFV sing 220 n n N18 H182 JFV sing 221 n n N18 H181 JFV sing 222 n n # _atom_sites.entry_id 7B87 _atom_sites.fract_transf_matrix[1][1] 0.016722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 501 501 DMS DMS . C 2 DMS A 1 502 502 DMS DMS . D 3 EDO A 1 503 552 EDO EDO . E 3 EDO A 1 504 556 EDO EDO . F 3 EDO A 1 505 558 EDO EDO . G 3 EDO A 1 506 560 EDO EDO . H 3 EDO A 1 507 561 EDO EDO . I 3 EDO A 1 508 562 EDO EDO . J 3 EDO A 1 509 563 EDO EDO . K 4 SO4 A 1 510 601 SO4 SO4 . L 4 SO4 A 1 511 602 SO4 SO4 . M 5 NAG A 1 512 1452 NAG NAG . N 6 JFV A 1 513 1501 JFV XXX . O 4 SO4 A 1 514 1 SO4 SO4 . P 7 HOH A 1 601 912 HOH HOH . P 7 HOH A 2 602 887 HOH HOH . P 7 HOH A 3 603 736 HOH HOH . P 7 HOH A 4 604 697 HOH HOH . P 7 HOH A 5 605 879 HOH HOH . P 7 HOH A 6 606 696 HOH HOH . P 7 HOH A 7 607 872 HOH HOH . P 7 HOH A 8 608 668 HOH HOH . P 7 HOH A 9 609 865 HOH HOH . P 7 HOH A 10 610 768 HOH HOH . P 7 HOH A 11 611 658 HOH HOH . P 7 HOH A 12 612 847 HOH HOH . P 7 HOH A 13 613 654 HOH HOH . P 7 HOH A 14 614 700 HOH HOH . P 7 HOH A 15 615 773 HOH HOH . P 7 HOH A 16 616 651 HOH HOH . P 7 HOH A 17 617 653 HOH HOH . P 7 HOH A 18 618 677 HOH HOH . P 7 HOH A 19 619 695 HOH HOH . P 7 HOH A 20 620 690 HOH HOH . P 7 HOH A 21 621 698 HOH HOH . P 7 HOH A 22 622 702 HOH HOH . P 7 HOH A 23 623 686 HOH HOH . P 7 HOH A 24 624 723 HOH HOH . P 7 HOH A 25 625 866 HOH HOH . P 7 HOH A 26 626 735 HOH HOH . P 7 HOH A 27 627 666 HOH HOH . P 7 HOH A 28 628 709 HOH HOH . P 7 HOH A 29 629 846 HOH HOH . P 7 HOH A 30 630 799 HOH HOH . P 7 HOH A 31 631 903 HOH HOH . P 7 HOH A 32 632 688 HOH HOH . P 7 HOH A 33 633 869 HOH HOH . P 7 HOH A 34 634 657 HOH HOH . P 7 HOH A 35 635 681 HOH HOH . P 7 HOH A 36 636 741 HOH HOH . P 7 HOH A 37 637 774 HOH HOH . P 7 HOH A 38 638 693 HOH HOH . P 7 HOH A 39 639 669 HOH HOH . P 7 HOH A 40 640 718 HOH HOH . P 7 HOH A 41 641 679 HOH HOH . P 7 HOH A 42 642 715 HOH HOH . P 7 HOH A 43 643 704 HOH HOH . P 7 HOH A 44 644 717 HOH HOH . P 7 HOH A 45 645 859 HOH HOH . P 7 HOH A 46 646 907 HOH HOH . P 7 HOH A 47 647 714 HOH HOH . P 7 HOH A 48 648 652 HOH HOH . P 7 HOH A 49 649 713 HOH HOH . P 7 HOH A 50 650 708 HOH HOH . P 7 HOH A 51 651 655 HOH HOH . P 7 HOH A 52 652 883 HOH HOH . P 7 HOH A 53 653 737 HOH HOH . P 7 HOH A 54 654 656 HOH HOH . P 7 HOH A 55 655 721 HOH HOH . P 7 HOH A 56 656 691 HOH HOH . P 7 HOH A 57 657 676 HOH HOH . P 7 HOH A 58 658 665 HOH HOH . P 7 HOH A 59 659 747 HOH HOH . P 7 HOH A 60 660 672 HOH HOH . P 7 HOH A 61 661 895 HOH HOH . P 7 HOH A 62 662 667 HOH HOH . P 7 HOH A 63 663 861 HOH HOH . P 7 HOH A 64 664 680 HOH HOH . P 7 HOH A 65 665 868 HOH HOH . P 7 HOH A 66 666 904 HOH HOH . P 7 HOH A 67 667 858 HOH HOH . P 7 HOH A 68 668 727 HOH HOH . P 7 HOH A 69 669 890 HOH HOH . P 7 HOH A 70 670 687 HOH HOH . P 7 HOH A 71 671 661 HOH HOH . P 7 HOH A 72 672 876 HOH HOH . P 7 HOH A 73 673 670 HOH HOH . P 7 HOH A 74 674 759 HOH HOH . P 7 HOH A 75 675 854 HOH HOH . P 7 HOH A 76 676 863 HOH HOH . P 7 HOH A 77 677 913 HOH HOH . P 7 HOH A 78 678 662 HOH HOH . P 7 HOH A 79 679 712 HOH HOH . P 7 HOH A 80 680 783 HOH HOH . P 7 HOH A 81 681 914 HOH HOH . P 7 HOH A 82 682 689 HOH HOH . P 7 HOH A 83 683 673 HOH HOH . P 7 HOH A 84 684 915 HOH HOH . P 7 HOH A 85 685 792 HOH HOH . P 7 HOH A 86 686 728 HOH HOH . P 7 HOH A 87 687 881 HOH HOH . P 7 HOH A 88 688 764 HOH HOH . P 7 HOH A 89 689 731 HOH HOH . P 7 HOH A 90 690 911 HOH HOH . P 7 HOH A 91 691 692 HOH HOH . P 7 HOH A 92 692 877 HOH HOH . P 7 HOH A 93 693 685 HOH HOH . P 7 HOH A 94 694 841 HOH HOH . P 7 HOH A 95 695 707 HOH HOH . P 7 HOH A 96 696 848 HOH HOH . P 7 HOH A 97 697 851 HOH HOH . P 7 HOH A 98 698 910 HOH HOH . P 7 HOH A 99 699 724 HOH HOH . P 7 HOH A 100 700 916 HOH HOH . P 7 HOH A 101 701 664 HOH HOH . P 7 HOH A 102 702 743 HOH HOH . P 7 HOH A 103 703 897 HOH HOH . P 7 HOH A 104 704 660 HOH HOH . P 7 HOH A 105 705 699 HOH HOH . P 7 HOH A 106 706 775 HOH HOH . P 7 HOH A 107 707 906 HOH HOH . P 7 HOH A 108 708 756 HOH HOH . P 7 HOH A 109 709 830 HOH HOH . P 7 HOH A 110 710 663 HOH HOH . P 7 HOH A 111 711 852 HOH HOH . P 7 HOH A 112 712 779 HOH HOH . P 7 HOH A 113 713 812 HOH HOH . P 7 HOH A 114 714 889 HOH HOH . P 7 HOH A 115 715 803 HOH HOH . P 7 HOH A 116 716 802 HOH HOH . P 7 HOH A 117 717 762 HOH HOH . P 7 HOH A 118 718 880 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JFV . . . N 6 0.032 -6.649 6.236 1 32.76 ? C10 JFV 513 A 1 HETATM 2 C C13 JFV . . . N 6 -1.05 -8.677 8.556 1 25.85 ? C13 JFV 513 A 1 HETATM 3 C C15 JFV . . . N 6 -1.032 -11.049 8.195 1 25.07 ? C15 JFV 513 A 1 HETATM 4 C C17 JFV . . . N 6 0.54 -9.647 7.041 1 25.23 ? C17 JFV 513 A 1 HETATM 5 C C01 JFV . . . N 6 4.083 -4.025 6.227 1 31.99 ? C01 JFV 513 A 1 HETATM 6 O O02 JFV . . . N 6 2.832 -4.207 5.619 1 33.45 ? O02 JFV 513 A 1 HETATM 7 C C03 JFV . . . N 6 1.922 -4.944 6.387 1 31.38 ? C03 JFV 513 A 1 HETATM 8 O O04 JFV . . . N 6 2.122 -5.099 7.546 1 34.13 ? O04 JFV 513 A 1 HETATM 9 C C05 JFV . . . N 6 0.677 -5.533 5.715 1 27.56 ? C05 JFV 513 A 1 HETATM 10 C C06 JFV . . . N 6 0.197 -4.925 4.566 1 28.89 ? C06 JFV 513 A 1 HETATM 11 C C07 JFV . . . N 6 -0.927 -5.425 3.928 1 26 ? C07 JFV 513 A 1 HETATM 12 C C08 JFV . . . N 6 -1.574 -6.535 4.443 1 30.83 ? C08 JFV 513 A 1 HETATM 13 C C09 JFV . . . N 6 -1.097 -7.143 5.593 1 31.39 ? C09 JFV 513 A 1 HETATM 14 O O11 JFV . . . N 6 0.525 -7.253 7.404 1 33.42 ? O11 JFV 513 A 1 HETATM 15 C C12 JFV . . . N 6 -0.002 -8.528 7.658 1 35.58 ? C12 JFV 513 A 1 HETATM 16 C C14 JFV . . . N 6 -1.568 -9.934 8.819 1 34.43 ? C14 JFV 513 A 1 HETATM 17 C C16 JFV . . . N 6 0.021 -10.905 7.305 1 29.96 ? C16 JFV 513 A 1 HETATM 18 N N18 JFV . . . N 6 -1.574 -12.368 8.473 1 35.58 ? N18 JFV 513 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 18 #