data_7B8I # _model_server_result.job_id jNgzXTlwoLiAyxEthE5T3w _model_server_result.datetime_utc '2024-11-27 03:35:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7B8I # _exptl.entry_id 7B8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B8I _cell.length_a 128.401 _cell.length_b 128.401 _cell.length_c 124.154 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 SGN IDS C1 O1 . O4 HO4 . sing 2 ? 2 3 2 IDS SGN C1 O1 . O4 HO4 . sing 3 ? 2 4 3 SGN IDS C1 O1 . O4 HO4 . sing 4 ? 2 5 4 IDS SGN C1 O1 . O4 HO4 . sing 5 ? 2 6 5 SGN IDS C1 O1 . O4 HO4 . sing 6 ? 2 7 6 IDS SGN C1 O1 . O4 HO4 . sing 7 ? 2 8 7 SGN IDS C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C IDS 1 C 1 IDS B 401 IDS 2 n C SGN 2 C 2 SGN B 402 SGN 2 n C IDS 3 C 3 IDS B 403 IDS 2 n C SGN 4 C 4 SGN B 404 SGN 2 n C IDS 5 C 5 IDS B 405 IDS 2 n C SGN 6 C 6 SGN B 406 SGN 2 n C IDS 7 C 7 IDS B 407 IDS 2 n C SGN 8 C 8 SGN B 408 SGN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 IDS . C IDS 1 1_555 C C1 SGN . C SGN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 C O4 SGN . C SGN 2 1_555 C C1 IDS . C IDS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 C O4 IDS . C IDS 3 1_555 C C1 SGN . C SGN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 C O4 SGN . C SGN 4 1_555 C C1 IDS . C IDS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 C O4 IDS . C IDS 5 1_555 C C1 SGN . C SGN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 C O4 SGN . C SGN 6 1_555 C C1 IDS . C IDS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 C O4 IDS . C IDS 7 1_555 C C1 SGN . C SGN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7B8I _atom_sites.fract_transf_matrix[1][1] 0.007788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 401 401 GOL GOL . E 4 SO4 A 1 402 402 SO4 SO4 . F 4 SO4 A 1 403 403 SO4 SO4 . G 4 SO4 B 1 401 409 SO4 SO4 . H 5 HOH A 1 501 501 HOH HOH . H 5 HOH A 2 502 502 HOH HOH . H 5 HOH A 3 503 503 HOH HOH . H 5 HOH A 4 504 504 HOH HOH . H 5 HOH A 5 505 505 HOH HOH . H 5 HOH A 6 506 506 HOH HOH . H 5 HOH A 7 507 507 HOH HOH . H 5 HOH A 8 508 508 HOH HOH . H 5 HOH A 9 509 509 HOH HOH . H 5 HOH A 10 510 510 HOH HOH . H 5 HOH A 11 511 511 HOH HOH . H 5 HOH A 12 512 512 HOH HOH . H 5 HOH A 13 513 513 HOH HOH . H 5 HOH A 14 514 514 HOH HOH . H 5 HOH A 15 515 515 HOH HOH . H 5 HOH A 16 516 516 HOH HOH . H 5 HOH A 17 517 517 HOH HOH . H 5 HOH A 18 518 518 HOH HOH . H 5 HOH A 19 519 519 HOH HOH . H 5 HOH A 20 520 520 HOH HOH . H 5 HOH A 21 521 521 HOH HOH . H 5 HOH A 22 522 522 HOH HOH . H 5 HOH A 23 523 523 HOH HOH . H 5 HOH A 24 524 524 HOH HOH . H 5 HOH A 25 525 525 HOH HOH . H 5 HOH A 26 526 526 HOH HOH . H 5 HOH A 27 527 527 HOH HOH . H 5 HOH A 28 528 528 HOH HOH . H 5 HOH A 29 529 529 HOH HOH . H 5 HOH A 30 530 530 HOH HOH . H 5 HOH A 31 531 531 HOH HOH . H 5 HOH A 32 532 532 HOH HOH . H 5 HOH A 33 533 533 HOH HOH . H 5 HOH A 34 534 534 HOH HOH . H 5 HOH A 35 535 535 HOH HOH . H 5 HOH A 36 536 536 HOH HOH . H 5 HOH A 37 537 537 HOH HOH . H 5 HOH A 38 538 538 HOH HOH . H 5 HOH A 39 539 539 HOH HOH . H 5 HOH A 40 540 540 HOH HOH . H 5 HOH A 41 541 541 HOH HOH . H 5 HOH A 42 542 542 HOH HOH . H 5 HOH A 43 543 543 HOH HOH . H 5 HOH A 44 544 544 HOH HOH . H 5 HOH A 45 545 545 HOH HOH . H 5 HOH A 46 546 546 HOH HOH . H 5 HOH A 47 547 547 HOH HOH . H 5 HOH A 48 548 548 HOH HOH . H 5 HOH A 49 549 549 HOH HOH . H 5 HOH A 50 550 550 HOH HOH . H 5 HOH A 51 551 551 HOH HOH . H 5 HOH A 52 552 552 HOH HOH . H 5 HOH A 53 553 553 HOH HOH . H 5 HOH A 54 554 554 HOH HOH . H 5 HOH A 55 555 555 HOH HOH . H 5 HOH A 56 556 556 HOH HOH . H 5 HOH A 57 557 557 HOH HOH . H 5 HOH A 58 558 558 HOH HOH . H 5 HOH A 59 559 559 HOH HOH . H 5 HOH A 60 560 560 HOH HOH . H 5 HOH A 61 561 561 HOH HOH . H 5 HOH A 62 562 562 HOH HOH . H 5 HOH A 63 563 563 HOH HOH . H 5 HOH A 64 564 564 HOH HOH . H 5 HOH A 65 565 565 HOH HOH . H 5 HOH A 66 566 566 HOH HOH . H 5 HOH A 67 567 567 HOH HOH . H 5 HOH A 68 568 568 HOH HOH . H 5 HOH A 69 569 569 HOH HOH . H 5 HOH A 70 570 570 HOH HOH . H 5 HOH A 71 571 572 HOH HOH . I 5 HOH B 1 501 501 HOH HOH . I 5 HOH B 2 502 502 HOH HOH . I 5 HOH B 3 503 503 HOH HOH . I 5 HOH B 4 504 504 HOH HOH . I 5 HOH B 5 505 505 HOH HOH . I 5 HOH B 6 506 506 HOH HOH . I 5 HOH B 7 507 507 HOH HOH . I 5 HOH B 8 508 508 HOH HOH . I 5 HOH B 9 509 509 HOH HOH . I 5 HOH B 10 510 510 HOH HOH . I 5 HOH B 11 511 511 HOH HOH . I 5 HOH B 12 512 512 HOH HOH . I 5 HOH B 13 513 513 HOH HOH . I 5 HOH B 14 514 514 HOH HOH . I 5 HOH B 15 515 515 HOH HOH . I 5 HOH B 16 516 516 HOH HOH . I 5 HOH B 17 517 517 HOH HOH . I 5 HOH B 18 518 518 HOH HOH . I 5 HOH B 19 519 519 HOH HOH . I 5 HOH B 20 520 520 HOH HOH . I 5 HOH B 21 521 521 HOH HOH . I 5 HOH B 22 522 522 HOH HOH . I 5 HOH B 23 523 523 HOH HOH . I 5 HOH B 24 524 524 HOH HOH . I 5 HOH B 25 525 525 HOH HOH . I 5 HOH B 26 526 526 HOH HOH . I 5 HOH B 27 527 527 HOH HOH . I 5 HOH B 28 528 528 HOH HOH . I 5 HOH B 29 529 529 HOH HOH . I 5 HOH B 30 530 530 HOH HOH . I 5 HOH B 31 531 531 HOH HOH . I 5 HOH B 32 532 532 HOH HOH . I 5 HOH B 33 533 533 HOH HOH . I 5 HOH B 34 534 534 HOH HOH . I 5 HOH B 35 535 535 HOH HOH . I 5 HOH B 36 536 536 HOH HOH . I 5 HOH B 37 537 537 HOH HOH . I 5 HOH B 38 538 538 HOH HOH . I 5 HOH B 39 539 539 HOH HOH . I 5 HOH B 40 540 540 HOH HOH . I 5 HOH B 41 541 541 HOH HOH . I 5 HOH B 42 542 542 HOH HOH . I 5 HOH B 43 543 543 HOH HOH . I 5 HOH B 44 544 544 HOH HOH . I 5 HOH B 45 545 545 HOH HOH . I 5 HOH B 46 546 546 HOH HOH . I 5 HOH B 47 547 547 HOH HOH . I 5 HOH B 48 548 548 HOH HOH . I 5 HOH B 49 549 549 HOH HOH . I 5 HOH B 50 550 551 HOH HOH . I 5 HOH B 51 551 552 HOH HOH . I 5 HOH B 52 552 553 HOH HOH . I 5 HOH B 53 553 554 HOH HOH . I 5 HOH B 54 554 555 HOH HOH . I 5 HOH B 55 555 556 HOH HOH . I 5 HOH B 56 556 557 HOH HOH . I 5 HOH B 57 557 558 HOH HOH . I 5 HOH B 58 558 559 HOH HOH . I 5 HOH B 59 559 560 HOH HOH . I 5 HOH B 60 560 561 HOH HOH . I 5 HOH B 61 561 562 HOH HOH . I 5 HOH B 62 562 563 HOH HOH . I 5 HOH B 63 563 564 HOH HOH . I 5 HOH B 64 564 565 HOH HOH . I 5 HOH B 65 565 566 HOH HOH . I 5 HOH B 66 566 567 HOH HOH . I 5 HOH B 67 567 568 HOH HOH . I 5 HOH B 68 568 569 HOH HOH . I 5 HOH B 69 569 550 HOH HOH . I 5 HOH B 70 570 570 HOH HOH . I 5 HOH B 71 571 571 HOH HOH . I 5 HOH B 72 572 573 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -4.659 30.235 -44.1 1 67.87 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . D 3 -3.666 30.144 -45.069 1 66.74 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . D 3 -3.96 30.506 -42.754 1 65.57 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . D 3 -4.849 30.444 -41.693 1 65.68 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . D 3 -2.845 29.444 -42.653 1 66.88 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . D 3 -1.834 30.007 -41.876 1 67.06 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #