data_7B8J # _model_server_result.job_id MSOFZvhA3ALeO5Dsw5Vy8Q _model_server_result.datetime_utc '2024-11-26 17:05:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7B8J # _exptl.entry_id 7B8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.244 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'biphenyl-4-ylacetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B8J _cell.length_a 60.116 _cell.length_b 72.43 _cell.length_c 79.046 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C14 H12 O2' _chem_comp.formula_weight 212.244 _chem_comp.id BP4 _chem_comp.mon_nstd_flag . _chem_comp.name 'biphenyl-4-ylacetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C BP4 sing 70 n n CA C5 BP4 sing 71 n n CA HA1 BP4 sing 72 n n CA HA2 BP4 sing 73 n n C O BP4 doub 74 n n C O2 BP4 sing 75 n n C2 C3 BP4 doub 76 n y C2 C1 BP4 sing 77 n y C2 C20 BP4 sing 78 n y C3 C4 BP4 sing 79 n y C3 H3 BP4 sing 80 n n C4 C5 BP4 doub 81 n y C4 H4 BP4 sing 82 n n C5 C6 BP4 sing 83 n y C6 C1 BP4 doub 84 n y C6 H6 BP4 sing 85 n n C1 H1 BP4 sing 86 n n C11 C23 BP4 doub 87 n y C11 C26 BP4 sing 88 n y C11 H11 BP4 sing 89 n n C18 C20 BP4 doub 90 n y C18 C23 BP4 sing 91 n y C18 H18 BP4 sing 92 n n C20 C25 BP4 sing 93 n y C23 H23 BP4 sing 94 n n C25 C26 BP4 doub 95 n y C25 H25 BP4 sing 96 n n C26 H26 BP4 sing 97 n n O2 H12 BP4 sing 98 n n # _atom_sites.entry_id 7B8J _atom_sites.fract_transf_matrix[1][1] 0.016634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 BP4 A 1 503 1501 BP4 XXX . E 2 SO4 A 1 504 1 SO4 SO4 . F 2 SO4 A 1 505 8 SO4 SO4 . G 2 SO4 A 1 506 9 SO4 SO4 . H 2 SO4 A 1 507 10 SO4 SO4 . I 5 HOH A 1 601 1018 HOH HOH . I 5 HOH A 2 602 1123 HOH HOH . I 5 HOH A 3 603 1047 HOH HOH . I 5 HOH A 4 604 1027 HOH HOH . I 5 HOH A 5 605 1067 HOH HOH . I 5 HOH A 6 606 1118 HOH HOH . I 5 HOH A 7 607 18 HOH HOH . I 5 HOH A 8 608 1033 HOH HOH . I 5 HOH A 9 609 1058 HOH HOH . I 5 HOH A 10 610 1073 HOH HOH . I 5 HOH A 11 611 1036 HOH HOH . I 5 HOH A 12 612 1196 HOH HOH . I 5 HOH A 13 613 1043 HOH HOH . I 5 HOH A 14 614 1082 HOH HOH . I 5 HOH A 15 615 1008 HOH HOH . I 5 HOH A 16 616 1197 HOH HOH . I 5 HOH A 17 617 1149 HOH HOH . I 5 HOH A 18 618 1031 HOH HOH . I 5 HOH A 19 619 1051 HOH HOH . I 5 HOH A 20 620 1012 HOH HOH . I 5 HOH A 21 621 1004 HOH HOH . I 5 HOH A 22 622 1048 HOH HOH . I 5 HOH A 23 623 11 HOH HOH . I 5 HOH A 24 624 1007 HOH HOH . I 5 HOH A 25 625 1003 HOH HOH . I 5 HOH A 26 626 1001 HOH HOH . I 5 HOH A 27 627 1045 HOH HOH . I 5 HOH A 28 628 12 HOH HOH . I 5 HOH A 29 629 1019 HOH HOH . I 5 HOH A 30 630 1064 HOH HOH . I 5 HOH A 31 631 1029 HOH HOH . I 5 HOH A 32 632 1063 HOH HOH . I 5 HOH A 33 633 1091 HOH HOH . I 5 HOH A 34 634 1035 HOH HOH . I 5 HOH A 35 635 1078 HOH HOH . I 5 HOH A 36 636 1059 HOH HOH . I 5 HOH A 37 637 1038 HOH HOH . I 5 HOH A 38 638 1190 HOH HOH . I 5 HOH A 39 639 1054 HOH HOH . I 5 HOH A 40 640 1017 HOH HOH . I 5 HOH A 41 641 1040 HOH HOH . I 5 HOH A 42 642 1052 HOH HOH . I 5 HOH A 43 643 1041 HOH HOH . I 5 HOH A 44 644 1005 HOH HOH . I 5 HOH A 45 645 1077 HOH HOH . I 5 HOH A 46 646 1022 HOH HOH . I 5 HOH A 47 647 57 HOH HOH . I 5 HOH A 48 648 1006 HOH HOH . I 5 HOH A 49 649 1013 HOH HOH . I 5 HOH A 50 650 1016 HOH HOH . I 5 HOH A 51 651 1062 HOH HOH . I 5 HOH A 52 652 1068 HOH HOH . I 5 HOH A 53 653 1002 HOH HOH . I 5 HOH A 54 654 1020 HOH HOH . I 5 HOH A 55 655 1015 HOH HOH . I 5 HOH A 56 656 1037 HOH HOH . I 5 HOH A 57 657 1014 HOH HOH . I 5 HOH A 58 658 1114 HOH HOH . I 5 HOH A 59 659 1065 HOH HOH . I 5 HOH A 60 660 1030 HOH HOH . I 5 HOH A 61 661 7 HOH HOH . I 5 HOH A 62 662 1011 HOH HOH . I 5 HOH A 63 663 1026 HOH HOH . I 5 HOH A 64 664 26 HOH HOH . I 5 HOH A 65 665 1023 HOH HOH . I 5 HOH A 66 666 1120 HOH HOH . I 5 HOH A 67 667 1057 HOH HOH . I 5 HOH A 68 668 1039 HOH HOH . I 5 HOH A 69 669 1074 HOH HOH . I 5 HOH A 70 670 1010 HOH HOH . I 5 HOH A 71 671 30 HOH HOH . I 5 HOH A 72 672 1115 HOH HOH . I 5 HOH A 73 673 1081 HOH HOH . I 5 HOH A 74 674 4 HOH HOH . I 5 HOH A 75 675 1042 HOH HOH . I 5 HOH A 76 676 1049 HOH HOH . I 5 HOH A 77 677 1153 HOH HOH . I 5 HOH A 78 678 1112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA BP4 . . . D 4 7.007 -4.557 5.754 1 26.55 ? CA BP4 503 A 1 HETATM 2 C C BP4 . . . D 4 7.749 -3.232 5.572 1 27.3 ? C BP4 503 A 1 HETATM 3 O O BP4 . . . D 4 7.096 -2.192 5.298 1 18.94 ? O BP4 503 A 1 HETATM 4 C C2 BP4 . . . D 4 2.697 -4.463 5.309 1 28.45 ? C2 BP4 503 A 1 HETATM 5 C C3 BP4 . . . D 4 3.272 -4.464 6.568 1 28.98 ? C3 BP4 503 A 1 HETATM 6 C C4 BP4 . . . D 4 4.654 -4.485 6.704 1 24.37 ? C4 BP4 503 A 1 HETATM 7 C C5 BP4 . . . D 4 5.477 -4.524 5.594 1 26.62 ? C5 BP4 503 A 1 HETATM 8 C C6 BP4 . . . D 4 4.901 -4.552 4.335 1 27.98 ? C6 BP4 503 A 1 HETATM 9 C C1 BP4 . . . D 4 3.52 -4.509 4.199 1 27.11 ? C1 BP4 503 A 1 HETATM 10 C C11 BP4 . . . D 4 -1.436 -4.754 4.819 1 31.56 ? C11 BP4 503 A 1 HETATM 11 C C18 BP4 . . . D 4 0.459 -3.766 5.973 1 34.79 ? C18 BP4 503 A 1 HETATM 12 C C20 BP4 . . . D 4 1.315 -4.497 5.169 1 33.82 ? C20 BP4 503 A 1 HETATM 13 C C23 BP4 . . . D 4 -0.9 -3.899 5.768 1 31.41 ? C23 BP4 503 A 1 HETATM 14 C C25 BP4 . . . D 4 0.78 -5.364 4.23 1 30.29 ? C25 BP4 503 A 1 HETATM 15 C C26 BP4 . . . D 4 -0.588 -5.498 4.039 1 29.02 ? C26 BP4 503 A 1 HETATM 16 O O2 BP4 . . . D 4 9.017 -3.191 5.683 1 29.24 -1 O2 BP4 503 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 67 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1115 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #