data_7B8N # _model_server_result.job_id bPlSRc8mLdC2KSkTIrRLiA _model_server_result.datetime_utc '2024-11-26 10:57:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7B8N # _exptl.entry_id 7B8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B8N _cell.length_a 60.174 _cell.length_b 72.656 _cell.length_c 78.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7B8N _atom_sites.fract_transf_matrix[1][1] 0.016619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 GOL A 1 503 1501 GOL GOL . E 2 SO4 A 1 504 1 SO4 SO4 . F 2 SO4 A 1 505 8 SO4 SO4 . G 2 SO4 A 1 506 9 SO4 SO4 . H 2 SO4 A 1 507 10 SO4 SO4 . I 2 SO4 A 1 508 11 SO4 SO4 . J 5 EDO A 1 509 3 EDO EDO . K 5 EDO A 1 510 4 EDO EDO . L 5 EDO A 1 511 7 EDO EDO . M 5 EDO A 1 512 8 EDO EDO . N 6 T2E A 1 513 1 T2E LIG . O 7 HOH A 1 601 19 HOH HOH . O 7 HOH A 2 602 60 HOH HOH . O 7 HOH A 3 603 27 HOH HOH . O 7 HOH A 4 604 54 HOH HOH . O 7 HOH A 5 605 1027 HOH HOH . O 7 HOH A 6 606 1070 HOH HOH . O 7 HOH A 7 607 1041 HOH HOH . O 7 HOH A 8 608 1018 HOH HOH . O 7 HOH A 9 609 31 HOH HOH . O 7 HOH A 10 610 22 HOH HOH . O 7 HOH A 11 611 1190 HOH HOH . O 7 HOH A 12 612 1031 HOH HOH . O 7 HOH A 13 613 1133 HOH HOH . O 7 HOH A 14 614 1047 HOH HOH . O 7 HOH A 15 615 1046 HOH HOH . O 7 HOH A 16 616 18 HOH HOH . O 7 HOH A 17 617 1125 HOH HOH . O 7 HOH A 18 618 1086 HOH HOH . O 7 HOH A 19 619 1097 HOH HOH . O 7 HOH A 20 620 1196 HOH HOH . O 7 HOH A 21 621 23 HOH HOH . O 7 HOH A 22 622 43 HOH HOH . O 7 HOH A 23 623 1159 HOH HOH . O 7 HOH A 24 624 1118 HOH HOH . O 7 HOH A 25 625 1123 HOH HOH . O 7 HOH A 26 626 1058 HOH HOH . O 7 HOH A 27 627 1098 HOH HOH . O 7 HOH A 28 628 25 HOH HOH . O 7 HOH A 29 629 1197 HOH HOH . O 7 HOH A 30 630 1045 HOH HOH . O 7 HOH A 31 631 1052 HOH HOH . O 7 HOH A 32 632 1048 HOH HOH . O 7 HOH A 33 633 1033 HOH HOH . O 7 HOH A 34 634 1029 HOH HOH . O 7 HOH A 35 635 1001 HOH HOH . O 7 HOH A 36 636 32 HOH HOH . O 7 HOH A 37 637 1004 HOH HOH . O 7 HOH A 38 638 1003 HOH HOH . O 7 HOH A 39 639 57 HOH HOH . O 7 HOH A 40 640 1051 HOH HOH . O 7 HOH A 41 641 1016 HOH HOH . O 7 HOH A 42 642 6 HOH HOH . O 7 HOH A 43 643 56 HOH HOH . O 7 HOH A 44 644 28 HOH HOH . O 7 HOH A 45 645 1073 HOH HOH . O 7 HOH A 46 646 1149 HOH HOH . O 7 HOH A 47 647 1091 HOH HOH . O 7 HOH A 48 648 1012 HOH HOH . O 7 HOH A 49 649 1063 HOH HOH . O 7 HOH A 50 650 1064 HOH HOH . O 7 HOH A 51 651 61 HOH HOH . O 7 HOH A 52 652 36 HOH HOH . O 7 HOH A 53 653 1059 HOH HOH . O 7 HOH A 54 654 1114 HOH HOH . O 7 HOH A 55 655 1085 HOH HOH . O 7 HOH A 56 656 1008 HOH HOH . O 7 HOH A 57 657 12 HOH HOH . O 7 HOH A 58 658 1036 HOH HOH . O 7 HOH A 59 659 11 HOH HOH . O 7 HOH A 60 660 1082 HOH HOH . O 7 HOH A 61 661 1040 HOH HOH . O 7 HOH A 62 662 1109 HOH HOH . O 7 HOH A 63 663 1145 HOH HOH . O 7 HOH A 64 664 4 HOH HOH . O 7 HOH A 65 665 1006 HOH HOH . O 7 HOH A 66 666 1007 HOH HOH . O 7 HOH A 67 667 7 HOH HOH . O 7 HOH A 68 668 50 HOH HOH . O 7 HOH A 69 669 1019 HOH HOH . O 7 HOH A 70 670 34 HOH HOH . O 7 HOH A 71 671 1038 HOH HOH . O 7 HOH A 72 672 1013 HOH HOH . O 7 HOH A 73 673 1068 HOH HOH . O 7 HOH A 74 674 16 HOH HOH . O 7 HOH A 75 675 1043 HOH HOH . O 7 HOH A 76 676 1067 HOH HOH . O 7 HOH A 77 677 1002 HOH HOH . O 7 HOH A 78 678 1054 HOH HOH . O 7 HOH A 79 679 21 HOH HOH . O 7 HOH A 80 680 1062 HOH HOH . O 7 HOH A 81 681 1092 HOH HOH . O 7 HOH A 82 682 1010 HOH HOH . O 7 HOH A 83 683 1039 HOH HOH . O 7 HOH A 84 684 1037 HOH HOH . O 7 HOH A 85 685 1026 HOH HOH . O 7 HOH A 86 686 1020 HOH HOH . O 7 HOH A 87 687 1015 HOH HOH . O 7 HOH A 88 688 1150 HOH HOH . O 7 HOH A 89 689 1035 HOH HOH . O 7 HOH A 90 690 1115 HOH HOH . O 7 HOH A 91 691 1005 HOH HOH . O 7 HOH A 92 692 1093 HOH HOH . O 7 HOH A 93 693 1011 HOH HOH . O 7 HOH A 94 694 1030 HOH HOH . O 7 HOH A 95 695 1014 HOH HOH . O 7 HOH A 96 696 1074 HOH HOH . O 7 HOH A 97 697 1077 HOH HOH . O 7 HOH A 98 698 29 HOH HOH . O 7 HOH A 99 699 26 HOH HOH . O 7 HOH A 100 700 1078 HOH HOH . O 7 HOH A 101 701 58 HOH HOH . O 7 HOH A 102 702 1065 HOH HOH . O 7 HOH A 103 703 48 HOH HOH . O 7 HOH A 104 704 1057 HOH HOH . O 7 HOH A 105 705 1071 HOH HOH . O 7 HOH A 106 706 30 HOH HOH . O 7 HOH A 107 707 59 HOH HOH . O 7 HOH A 108 708 14 HOH HOH . O 7 HOH A 109 709 1042 HOH HOH . O 7 HOH A 110 710 13 HOH HOH . O 7 HOH A 111 711 1017 HOH HOH . O 7 HOH A 112 712 1049 HOH HOH . O 7 HOH A 113 713 1142 HOH HOH . O 7 HOH A 114 714 1023 HOH HOH . O 7 HOH A 115 715 1081 HOH HOH . O 7 HOH A 116 716 1079 HOH HOH . O 7 HOH A 117 717 1198 HOH HOH . O 7 HOH A 118 718 1066 HOH HOH . O 7 HOH A 119 719 1191 HOH HOH . O 7 HOH A 120 720 1153 HOH HOH . O 7 HOH A 121 721 1162 HOH HOH . O 7 HOH A 122 722 42 HOH HOH . O 7 HOH A 123 723 1152 HOH HOH . O 7 HOH A 124 724 1112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -2.797 -6.572 -14.062 1 24.79 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . D 4 -2.529 -7.381 -15.145 1 44.67 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . D 4 -4.295 -6.547 -13.885 1 18.48 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . D 4 -4.605 -5.973 -12.684 1 40.76 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . D 4 -4.807 -5.678 -15.061 1 34.22 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . D 4 -6.191 -5.625 -14.988 1 40.26 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #