data_7B8U # _model_server_result.job_id -ox5E2_GgLkVk-X9BaJfCw _model_server_result.datetime_utc '2024-11-13 05:49:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 7B8U # _exptl.entry_id 7B8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(piperidin-1-yl)-1,2,5-oxadiazol-3-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B8U _cell.length_a 60.4 _cell.length_b 72.758 _cell.length_c 79.087 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C7 H12 N4 O' _chem_comp.formula_weight 168.196 _chem_comp.id RUY _chem_comp.mon_nstd_flag . _chem_comp.name 4-(piperidin-1-yl)-1,2,5-oxadiazol-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 RUY sing 307 n n C2 C3 RUY sing 308 n n C1 C5 RUY sing 309 n n C3 N1 RUY sing 310 n n C5 C4 RUY sing 311 n n C4 N1 RUY sing 312 n n N1 C6 RUY sing 313 n n N4 C7 RUY sing 314 n n C6 C7 RUY sing 315 n y C6 N3 RUY doub 316 n y C7 N2 RUY doub 317 n y N3 O1 RUY sing 318 n y N2 O1 RUY sing 319 n y C4 H1 RUY sing 320 n n C4 H2 RUY sing 321 n n C5 H3 RUY sing 322 n n C5 H4 RUY sing 323 n n C1 H5 RUY sing 324 n n C1 H6 RUY sing 325 n n C2 H7 RUY sing 326 n n C2 H8 RUY sing 327 n n C3 H9 RUY sing 328 n n C3 H10 RUY sing 329 n n N4 H11 RUY sing 330 n n N4 H12 RUY sing 331 n n # _atom_sites.entry_id 7B8U _atom_sites.fract_transf_matrix[1][1] 0.016556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 2 SO4 A 1 503 1 SO4 SO4 . E 2 SO4 A 1 504 8 SO4 SO4 . F 2 SO4 A 1 505 9 SO4 SO4 . G 2 SO4 A 1 506 10 SO4 SO4 . H 2 SO4 A 1 507 11 SO4 SO4 . I 4 RUY A 1 508 1 RUY LIG . J 5 HOH A 1 601 27 HOH HOH . J 5 HOH A 2 602 23 HOH HOH . J 5 HOH A 3 603 1047 HOH HOH . J 5 HOH A 4 604 1073 HOH HOH . J 5 HOH A 5 605 1018 HOH HOH . J 5 HOH A 6 606 1033 HOH HOH . J 5 HOH A 7 607 1027 HOH HOH . J 5 HOH A 8 608 1058 HOH HOH . J 5 HOH A 9 609 1036 HOH HOH . J 5 HOH A 10 610 1196 HOH HOH . J 5 HOH A 11 611 1051 HOH HOH . J 5 HOH A 12 612 1046 HOH HOH . J 5 HOH A 13 613 1031 HOH HOH . J 5 HOH A 14 614 1004 HOH HOH . J 5 HOH A 15 615 36 HOH HOH . J 5 HOH A 16 616 1045 HOH HOH . J 5 HOH A 17 617 1048 HOH HOH . J 5 HOH A 18 618 1001 HOH HOH . J 5 HOH A 19 619 11 HOH HOH . J 5 HOH A 20 620 1050 HOH HOH . J 5 HOH A 21 621 1064 HOH HOH . J 5 HOH A 22 622 1098 HOH HOH . J 5 HOH A 23 623 1118 HOH HOH . J 5 HOH A 24 624 1003 HOH HOH . J 5 HOH A 25 625 1040 HOH HOH . J 5 HOH A 26 626 1012 HOH HOH . J 5 HOH A 27 627 1063 HOH HOH . J 5 HOH A 28 628 1029 HOH HOH . J 5 HOH A 29 629 1068 HOH HOH . J 5 HOH A 30 630 1091 HOH HOH . J 5 HOH A 31 631 12 HOH HOH . J 5 HOH A 32 632 1082 HOH HOH . J 5 HOH A 33 633 1059 HOH HOH . J 5 HOH A 34 634 1054 HOH HOH . J 5 HOH A 35 635 1145 HOH HOH . J 5 HOH A 36 636 1190 HOH HOH . J 5 HOH A 37 637 1043 HOH HOH . J 5 HOH A 38 638 1011 HOH HOH . J 5 HOH A 39 639 18 HOH HOH . J 5 HOH A 40 640 1052 HOH HOH . J 5 HOH A 41 641 1114 HOH HOH . J 5 HOH A 42 642 1149 HOH HOH . J 5 HOH A 43 643 1007 HOH HOH . J 5 HOH A 44 644 1016 HOH HOH . J 5 HOH A 45 645 1022 HOH HOH . J 5 HOH A 46 646 20 HOH HOH . J 5 HOH A 47 647 34 HOH HOH . J 5 HOH A 48 648 1020 HOH HOH . J 5 HOH A 49 649 59 HOH HOH . J 5 HOH A 50 650 1002 HOH HOH . J 5 HOH A 51 651 1006 HOH HOH . J 5 HOH A 52 652 1023 HOH HOH . J 5 HOH A 53 653 1038 HOH HOH . J 5 HOH A 54 654 1015 HOH HOH . J 5 HOH A 55 655 1037 HOH HOH . J 5 HOH A 56 656 1035 HOH HOH . J 5 HOH A 57 657 1030 HOH HOH . J 5 HOH A 58 658 1120 HOH HOH . J 5 HOH A 59 659 1019 HOH HOH . J 5 HOH A 60 660 21 HOH HOH . J 5 HOH A 61 661 1005 HOH HOH . J 5 HOH A 62 662 1010 HOH HOH . J 5 HOH A 63 663 1014 HOH HOH . J 5 HOH A 64 664 1065 HOH HOH . J 5 HOH A 65 665 1039 HOH HOH . J 5 HOH A 66 666 1067 HOH HOH . J 5 HOH A 67 667 4 HOH HOH . J 5 HOH A 68 668 1041 HOH HOH . J 5 HOH A 69 669 1078 HOH HOH . J 5 HOH A 70 670 60 HOH HOH . J 5 HOH A 71 671 1093 HOH HOH . J 5 HOH A 72 672 1150 HOH HOH . J 5 HOH A 73 673 1057 HOH HOH . J 5 HOH A 74 674 1077 HOH HOH . J 5 HOH A 75 675 1092 HOH HOH . J 5 HOH A 76 676 1013 HOH HOH . J 5 HOH A 77 677 1106 HOH HOH . J 5 HOH A 78 678 30 HOH HOH . J 5 HOH A 79 679 1074 HOH HOH . J 5 HOH A 80 680 1071 HOH HOH . J 5 HOH A 81 681 1026 HOH HOH . J 5 HOH A 82 682 1042 HOH HOH . J 5 HOH A 83 683 1115 HOH HOH . J 5 HOH A 84 684 1142 HOH HOH . J 5 HOH A 85 685 1049 HOH HOH . J 5 HOH A 86 686 1066 HOH HOH . J 5 HOH A 87 687 42 HOH HOH . J 5 HOH A 88 688 1153 HOH HOH . J 5 HOH A 89 689 33 HOH HOH . J 5 HOH A 90 690 1112 HOH HOH . J 5 HOH A 91 691 1152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RUY . . . I 4 1.805 -5.407 5.707 1 28.08 ? N1 RUY 508 A 1 HETATM 2 N N3 RUY . . . I 4 0.437 -7.337 6.36 1 27.87 ? N3 RUY 508 A 1 HETATM 3 C C4 RUY . . . I 4 3.045 -5.84 6.5 1 31.57 ? C4 RUY 508 A 1 HETATM 4 C C5 RUY . . . I 4 4.286 -4.982 6.23 1 30.18 ? C5 RUY 508 A 1 HETATM 5 C C6 RUY . . . I 4 0.671 -6.301 5.576 1 34.7 ? C6 RUY 508 A 1 HETATM 6 C C7 RUY . . . I 4 -0.334 -6.247 4.618 1 31.36 ? C7 RUY 508 A 1 HETATM 7 C C1 RUY . . . I 4 4.008 -3.564 6.351 1 23.38 ? C1 RUY 508 A 1 HETATM 8 C C2 RUY . . . I 4 2.892 -3.136 5.517 1 26.02 ? C2 RUY 508 A 1 HETATM 9 C C3 RUY . . . I 4 1.613 -3.903 5.852 1 32.13 ? C3 RUY 508 A 1 HETATM 10 N N2 RUY . . . I 4 -1.164 -7.243 4.846 1 32.14 ? N2 RUY 508 A 1 HETATM 11 N N4 RUY . . . I 4 -0.474 -5.283 3.546 1 28.67 ? N4 RUY 508 A 1 HETATM 12 O O1 RUY . . . I 4 -0.703 -7.934 5.927 1 34.74 ? O1 RUY 508 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #