data_7B8Z # _model_server_result.job_id ldOW1lC52oddFaayHuAjWQ _model_server_result.datetime_utc '2024-11-13 04:56:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7B8Z # _exptl.entry_id 7B8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B8Z _cell.length_a 59.457 _cell.length_b 73.598 _cell.length_c 78.758 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 278 n n C1 O1 NAG sing 279 n n C1 O5 NAG sing 280 n n C1 H1 NAG sing 281 n n C2 C3 NAG sing 282 n n C2 N2 NAG sing 283 n n C2 H2 NAG sing 284 n n C3 C4 NAG sing 285 n n C3 O3 NAG sing 286 n n C3 H3 NAG sing 287 n n C4 C5 NAG sing 288 n n C4 O4 NAG sing 289 n n C4 H4 NAG sing 290 n n C5 C6 NAG sing 291 n n C5 O5 NAG sing 292 n n C5 H5 NAG sing 293 n n C6 O6 NAG sing 294 n n C6 H61 NAG sing 295 n n C6 H62 NAG sing 296 n n C7 C8 NAG sing 297 n n C7 N2 NAG sing 298 n n C7 O7 NAG doub 299 n n C8 H81 NAG sing 300 n n C8 H82 NAG sing 301 n n C8 H83 NAG sing 302 n n N2 HN2 NAG sing 303 n n O1 HO1 NAG sing 304 n n O3 HO3 NAG sing 305 n n O4 HO4 NAG sing 306 n n O6 HO6 NAG sing 307 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7B8Z _atom_sites.fract_transf_matrix[1][1] 0.016819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 DMS A 1 503 1501 DMS DMS . E 2 SO4 A 1 504 1 SO4 SO4 . F 2 SO4 A 1 505 8 SO4 SO4 . G 2 SO4 A 1 506 9 SO4 SO4 . H 2 SO4 A 1 507 10 SO4 SO4 . I 2 SO4 A 1 508 11 SO4 SO4 . J 2 SO4 A 1 509 12 SO4 SO4 . K 5 A6Z A 1 510 1 A6Z LIG . L 6 HOH A 1 601 1031 HOH HOH . L 6 HOH A 2 602 1048 HOH HOH . L 6 HOH A 3 603 1004 HOH HOH . L 6 HOH A 4 604 1123 HOH HOH . L 6 HOH A 5 605 1033 HOH HOH . L 6 HOH A 6 606 1149 HOH HOH . L 6 HOH A 7 607 1046 HOH HOH . L 6 HOH A 8 608 1027 HOH HOH . L 6 HOH A 9 609 1045 HOH HOH . L 6 HOH A 10 610 1050 HOH HOH . L 6 HOH A 11 611 1087 HOH HOH . L 6 HOH A 12 612 11 HOH HOH . L 6 HOH A 13 613 1036 HOH HOH . L 6 HOH A 14 614 1001 HOH HOH . L 6 HOH A 15 615 1118 HOH HOH . L 6 HOH A 16 616 1051 HOH HOH . L 6 HOH A 17 617 1008 HOH HOH . L 6 HOH A 18 618 1074 HOH HOH . L 6 HOH A 19 619 1003 HOH HOH . L 6 HOH A 20 620 1063 HOH HOH . L 6 HOH A 21 621 1085 HOH HOH . L 6 HOH A 22 622 1016 HOH HOH . L 6 HOH A 23 623 1091 HOH HOH . L 6 HOH A 24 624 1007 HOH HOH . L 6 HOH A 25 625 1038 HOH HOH . L 6 HOH A 26 626 57 HOH HOH . L 6 HOH A 27 627 56 HOH HOH . L 6 HOH A 28 628 1043 HOH HOH . L 6 HOH A 29 629 1014 HOH HOH . L 6 HOH A 30 630 4 HOH HOH . L 6 HOH A 31 631 12 HOH HOH . L 6 HOH A 32 632 1058 HOH HOH . L 6 HOH A 33 633 1196 HOH HOH . L 6 HOH A 34 634 1037 HOH HOH . L 6 HOH A 35 635 1077 HOH HOH . L 6 HOH A 36 636 36 HOH HOH . L 6 HOH A 37 637 1068 HOH HOH . L 6 HOH A 38 638 7 HOH HOH . L 6 HOH A 39 639 34 HOH HOH . L 6 HOH A 40 640 1098 HOH HOH . L 6 HOH A 41 641 1019 HOH HOH . L 6 HOH A 42 642 1041 HOH HOH . L 6 HOH A 43 643 1029 HOH HOH . L 6 HOH A 44 644 1002 HOH HOH . L 6 HOH A 45 645 1006 HOH HOH . L 6 HOH A 46 646 1013 HOH HOH . L 6 HOH A 47 647 1030 HOH HOH . L 6 HOH A 48 648 14 HOH HOH . L 6 HOH A 49 649 1015 HOH HOH . L 6 HOH A 50 650 1073 HOH HOH . L 6 HOH A 51 651 1005 HOH HOH . L 6 HOH A 52 652 1039 HOH HOH . L 6 HOH A 53 653 1023 HOH HOH . L 6 HOH A 54 654 22 HOH HOH . L 6 HOH A 55 655 1012 HOH HOH . L 6 HOH A 56 656 1081 HOH HOH . L 6 HOH A 57 657 1011 HOH HOH . L 6 HOH A 58 658 26 HOH HOH . L 6 HOH A 59 659 1020 HOH HOH . L 6 HOH A 60 660 30 HOH HOH . L 6 HOH A 61 661 1092 HOH HOH . L 6 HOH A 62 662 1150 HOH HOH . L 6 HOH A 63 663 1106 HOH HOH . L 6 HOH A 64 664 1026 HOH HOH . L 6 HOH A 65 665 1057 HOH HOH . L 6 HOH A 66 666 1140 HOH HOH . L 6 HOH A 67 667 1042 HOH HOH . L 6 HOH A 68 668 1124 HOH HOH . L 6 HOH A 69 669 1035 HOH HOH . L 6 HOH A 70 670 1120 HOH HOH . L 6 HOH A 71 671 1142 HOH HOH . L 6 HOH A 72 672 29 HOH HOH . L 6 HOH A 73 673 1049 HOH HOH . L 6 HOH A 74 674 1191 HOH HOH . L 6 HOH A 75 675 42 HOH HOH . L 6 HOH A 76 676 1153 HOH HOH . L 6 HOH A 77 677 1112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 -4.153 21.356 -1.28 1 54.37 ? C1 NAG 502 A 1 HETATM 2 C C2 NAG . . . C 3 -5.227 21.853 -2.232 1 63.17 ? C2 NAG 502 A 1 HETATM 3 C C3 NAG . . . C 3 -6.606 21.738 -1.587 1 59.43 ? C3 NAG 502 A 1 HETATM 4 C C4 NAG . . . C 3 -6.836 20.359 -0.976 1 57.7 ? C4 NAG 502 A 1 HETATM 5 C C5 NAG . . . C 3 -5.649 19.897 -0.138 1 57.25 ? C5 NAG 502 A 1 HETATM 6 C C6 NAG . . . C 3 -5.756 18.444 0.276 1 56.58 ? C6 NAG 502 A 1 HETATM 7 C C7 NAG . . . C 3 -4.748 23.594 -3.907 1 64.78 ? C7 NAG 502 A 1 HETATM 8 C C8 NAG . . . C 3 -4.501 25.057 -4.134 1 67.31 ? C8 NAG 502 A 1 HETATM 9 N N2 NAG . . . C 3 -4.969 23.228 -2.638 1 62.64 ? N2 NAG 502 A 1 HETATM 10 O O3 NAG . . . C 3 -7.564 21.94 -2.615 1 66.83 ? O3 NAG 502 A 1 HETATM 11 O O4 NAG . . . C 3 -7.976 20.406 -0.125 1 55.94 ? O4 NAG 502 A 1 HETATM 12 O O5 NAG . . . C 3 -4.44 20.021 -0.895 1 60.58 ? O5 NAG 502 A 1 HETATM 13 O O6 NAG . . . C 3 -5.833 17.576 -0.849 1 58.26 ? O6 NAG 502 A 1 HETATM 14 O O7 NAG . . . C 3 -4.748 22.782 -4.83 1 61.65 ? O7 NAG 502 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #