data_7B91 # _model_server_result.job_id Mqj-J-Q8RfT-tddaMyov-A _model_server_result.datetime_utc '2025-01-18 05:57:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1401}' # _entry.id 7B91 # _exptl.entry_id 7B91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.697 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{S},3~{S},4~{E},6~{S},7~{R},10~{R})-3,7-dimethyl-2-[(2~{E},4~{E},6~{R})-6-methyl-6-oxidanyl-7-[(2~{R},3~{R})-3-[(2~{R},3~{S})-3-oxidanylpentan-2-yl]oxiran-2-yl]hepta-2,4-dien-2-yl]-7,10-bis(oxidanyl)-12-oxidanylidene-1-oxacyclododec-4-en-6-yl] ethanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B91 _cell.length_a 106.075 _cell.length_b 109.799 _cell.length_c 251.936 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D SG CYS 21 D CYS 11 1_555 G ZN ZN . D ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 D SG CYS 33 D CYS 23 1_555 F ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 D SG CYS 36 D CYS 26 1_555 F ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 D SG CYS 40 D CYS 30 1_555 H ZN ZN . D ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 D SG CYS 43 D CYS 33 1_555 H ZN ZN . D ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc6 D SG CYS 56 D CYS 46 1_555 G ZN ZN . D ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc7 D SG CYS 59 D CYS 49 1_555 G ZN ZN . D ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 D SG CYS 68 D CYS 58 1_555 F ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc9 D SG CYS 71 D CYS 61 1_555 F ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc10 D SG CYS 82 D CYS 72 1_555 H ZN ZN . D ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc11 D SG CYS 85 D CYS 75 1_555 H ZN ZN . D ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc12 D SG CYS 95 D CYS 85 1_555 G ZN ZN . D ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C30 H48 O9' _chem_comp.formula_weight 552.697 _chem_comp.id T2Z _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{S},3~{S},4~{E},6~{S},7~{R},10~{R})-3,7-dimethyl-2-[(2~{E},4~{E},6~{R})-6-methyl-6-oxidanyl-7-[(2~{R},3~{R})-3-[(2~{R},3~{S})-3-oxidanylpentan-2-yl]oxiran-2-yl]hepta-2,4-dien-2-yl]-7,10-bis(oxidanyl)-12-oxidanylidene-1-oxacyclododec-4-en-6-yl] ethanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 T2Z sing 290 n n C7 C8 T2Z sing 291 n n C7 C6 T2Z sing 292 n n C8 C10 T2Z sing 293 n n C8 O7 T2Z sing 294 n n O C6 T2Z sing 295 n n O C5 T2Z sing 296 n n C6 C5 T2Z sing 297 n n C5 C3 T2Z sing 298 n n C10 C11 T2Z doub 299 e n O8 C2 T2Z sing 300 n n C2 C3 T2Z sing 301 n n C2 C1 T2Z sing 302 n n C3 C4 T2Z sing 303 n n C11 C12 T2Z sing 304 n n O1 C25 T2Z doub 305 n n O3 C23 T2Z sing 306 n n C12 C13 T2Z doub 307 e n C1 C T2Z sing 308 n n C25 C24 T2Z sing 309 n n C25 O2 T2Z sing 310 n n C24 C23 T2Z sing 311 n n C23 C22 T2Z sing 312 n n C13 C15 T2Z sing 313 n n C13 C14 T2Z sing 314 n n C15 O2 T2Z sing 315 n n C15 C16 T2Z sing 316 n n C22 C21 T2Z sing 317 n n C16 C29 T2Z sing 318 n n C16 C17 T2Z sing 319 n n C17 C18 T2Z doub 320 e n C21 C20 T2Z sing 321 n n C18 C19 T2Z sing 322 n n C19 C20 T2Z sing 323 n n C19 O5 T2Z sing 324 n n C20 C26 T2Z sing 325 n n C20 O4 T2Z sing 326 n n O6 C27 T2Z doub 327 n n C27 O5 T2Z sing 328 n n C27 C28 T2Z sing 329 n n C1 H1 T2Z sing 330 n n C1 H2 T2Z sing 331 n n C2 H3 T2Z sing 332 n n C3 H4 T2Z sing 333 n n C4 H5 T2Z sing 334 n n C4 H6 T2Z sing 335 n n C4 H7 T2Z sing 336 n n C5 H8 T2Z sing 337 n n C6 H9 T2Z sing 338 n n C7 H10 T2Z sing 339 n n C7 H11 T2Z sing 340 n n O3 H12 T2Z sing 341 n n C H13 T2Z sing 342 n n C H14 T2Z sing 343 n n C H15 T2Z sing 344 n n C10 H16 T2Z sing 345 n n C11 H17 T2Z sing 346 n n C12 H18 T2Z sing 347 n n C14 H19 T2Z sing 348 n n C14 H20 T2Z sing 349 n n C14 H21 T2Z sing 350 n n C15 H22 T2Z sing 351 n n C16 H23 T2Z sing 352 n n C17 H24 T2Z sing 353 n n C18 H25 T2Z sing 354 n n C19 H26 T2Z sing 355 n n C21 H27 T2Z sing 356 n n C21 H28 T2Z sing 357 n n C22 H29 T2Z sing 358 n n C22 H30 T2Z sing 359 n n C23 H31 T2Z sing 360 n n C24 H32 T2Z sing 361 n n C24 H33 T2Z sing 362 n n C26 H34 T2Z sing 363 n n C26 H35 T2Z sing 364 n n C26 H36 T2Z sing 365 n n C28 H37 T2Z sing 366 n n C28 H38 T2Z sing 367 n n C28 H39 T2Z sing 368 n n C29 H40 T2Z sing 369 n n C29 H41 T2Z sing 370 n n C29 H42 T2Z sing 371 n n C9 H43 T2Z sing 372 n n C9 H44 T2Z sing 373 n n C9 H45 T2Z sing 374 n n O4 H46 T2Z sing 375 n n O7 H47 T2Z sing 376 n n O8 H48 T2Z sing 377 n n # _atom_sites.entry_id 7B91 _atom_sites.fract_transf_matrix[1][1] 0.009427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 T2Z D 1 1401 1401 T2Z PLD . F 6 ZN D 1 1402 6 ZN ZN . G 6 ZN D 1 1403 7 ZN ZN . H 6 ZN D 1 1404 8 ZN ZN . I 7 HOH D 1 1501 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T2Z . . . E 5 -21.501 40.299 -31.544 1 73.14 ? C1 T2Z 1401 D 1 HETATM 2 C C2 T2Z . . . E 5 -20.82 40.495 -32.886 1 79.49 ? C2 T2Z 1401 D 1 HETATM 3 C C3 T2Z . . . E 5 -19.495 41.258 -32.753 1 80.77 ? C3 T2Z 1401 D 1 HETATM 4 C C4 T2Z . . . E 5 -18.528 40.548 -31.805 1 74.53 ? C4 T2Z 1401 D 1 HETATM 5 C C5 T2Z . . . E 5 -18.855 41.495 -34.125 1 81.66 ? C5 T2Z 1401 D 1 HETATM 6 C C6 T2Z . . . E 5 -17.748 42.44 -34.245 1 86.92 ? C6 T2Z 1401 D 1 HETATM 7 C C7 T2Z . . . E 5 -16.71 42.384 -35.362 1 76.51 ? C7 T2Z 1401 D 1 HETATM 8 C C8 T2Z . . . E 5 -15.298 42.234 -34.772 1 81.9 ? C8 T2Z 1401 D 1 HETATM 9 O O2 T2Z . . . E 5 -13.251 37.27 -30.205 1 88.41 ? O2 T2Z 1401 D 1 HETATM 10 O O3 T2Z . . . E 5 -12.043 33.849 -32.055 1 82.83 ? O3 T2Z 1401 D 1 HETATM 11 C C T2Z . . . E 5 -21.922 41.593 -30.882 1 75.64 ? C T2Z 1401 D 1 HETATM 12 O O T2Z . . . E 5 -19.085 42.822 -34.643 1 93.38 ? O T2Z 1401 D 1 HETATM 13 C C10 T2Z . . . E 5 -15.266 40.973 -33.945 1 83.78 ? C10 T2Z 1401 D 1 HETATM 14 C C11 T2Z . . . E 5 -14.83 40.859 -32.7 1 83.29 ? C11 T2Z 1401 D 1 HETATM 15 C C12 T2Z . . . E 5 -14.86 39.594 -32.031 1 79 ? C12 T2Z 1401 D 1 HETATM 16 C C13 T2Z . . . E 5 -14.427 39.302 -30.803 1 73.26 ? C13 T2Z 1401 D 1 HETATM 17 C C14 T2Z . . . E 5 -13.799 40.296 -29.869 1 81.83 ? C14 T2Z 1401 D 1 HETATM 18 C C15 T2Z . . . E 5 -14.555 37.885 -30.295 1 78.57 ? C15 T2Z 1401 D 1 HETATM 19 C C16 T2Z . . . E 5 -15.18 37.783 -28.894 1 73.32 ? C16 T2Z 1401 D 1 HETATM 20 C C17 T2Z . . . E 5 -15.127 36.362 -28.404 1 76.29 ? C17 T2Z 1401 D 1 HETATM 21 C C18 T2Z . . . E 5 -14.348 35.896 -27.451 1 74 ? C18 T2Z 1401 D 1 HETATM 22 C C19 T2Z . . . E 5 -14.133 34.44 -27.184 1 75.99 ? C19 T2Z 1401 D 1 HETATM 23 C C20 T2Z . . . E 5 -12.639 34.072 -27.076 1 81.96 ? C20 T2Z 1401 D 1 HETATM 24 C C21 T2Z . . . E 5 -11.866 34.519 -28.326 1 82.68 ? C21 T2Z 1401 D 1 HETATM 25 C C22 T2Z . . . E 5 -12.31 33.928 -29.667 1 83.99 ? C22 T2Z 1401 D 1 HETATM 26 C C23 T2Z . . . E 5 -11.495 34.41 -30.857 1 89.94 ? C23 T2Z 1401 D 1 HETATM 27 C C24 T2Z . . . E 5 -11.482 35.931 -30.987 1 89.84 ? C24 T2Z 1401 D 1 HETATM 28 C C25 T2Z . . . E 5 -12.795 36.602 -31.281 1 89.72 ? C25 T2Z 1401 D 1 HETATM 29 C C26 T2Z . . . E 5 -12.481 32.573 -26.853 1 67.73 ? C26 T2Z 1401 D 1 HETATM 30 C C27 T2Z . . . E 5 -15.86 33.334 -25.931 1 71.04 ? C27 T2Z 1401 D 1 HETATM 31 C C28 T2Z . . . E 5 -16.339 33.034 -24.553 1 73.12 ? C28 T2Z 1401 D 1 HETATM 32 C C29 T2Z . . . E 5 -16.631 38.267 -28.887 1 64.64 ? C29 T2Z 1401 D 1 HETATM 33 C C9 T2Z . . . E 5 -14.227 42.189 -35.858 1 88.61 ? C9 T2Z 1401 D 1 HETATM 34 O O1 T2Z . . . E 5 -13.374 36.549 -32.334 1 91.9 ? O1 T2Z 1401 D 1 HETATM 35 O O4 T2Z . . . E 5 -12.078 34.767 -25.947 1 88.17 ? O4 T2Z 1401 D 1 HETATM 36 O O5 T2Z . . . E 5 -14.76 34.116 -25.906 1 68.97 ? O5 T2Z 1401 D 1 HETATM 37 O O6 T2Z . . . E 5 -16.36 32.942 -26.945 1 75.21 ? O6 T2Z 1401 D 1 HETATM 38 O O7 T2Z . . . E 5 -15.044 43.379 -33.933 1 90.51 ? O7 T2Z 1401 D 1 HETATM 39 O O8 T2Z . . . E 5 -20.56 39.221 -33.476 1 88.55 ? O8 T2Z 1401 D 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #