data_7B98 # _model_server_result.job_id aalNZd0bp0rp9Kc3YhkmPQ _model_server_result.datetime_utc '2024-11-22 00:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":511}' # _entry.id 7B98 # _exptl.entry_id 7B98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.207 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3-phenyl-1,2-oxazol-5-yl)methylazanium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B98 _cell.length_a 60.831 _cell.length_b 72.401 _cell.length_c 78.859 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C10 H11 N2 O 1' _chem_comp.formula_weight 175.207 _chem_comp.id EJW _chem_comp.mon_nstd_flag . _chem_comp.name (3-phenyl-1,2-oxazol-5-yl)methylazanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 EJW doub 92 n y C02 C03 EJW sing 93 n y C01 C06 EJW sing 94 n y C03 C04 EJW doub 95 n y C08 C09 EJW doub 96 n y C08 C07 EJW sing 97 n y C12 C09 EJW sing 98 n n C12 N13 EJW sing 99 n n C06 C05 EJW doub 100 n y C04 C05 EJW sing 101 n y C04 C07 EJW sing 102 n n C09 O10 EJW sing 103 n y C07 N11 EJW doub 104 n y O10 N11 EJW sing 105 n y C01 H1 EJW sing 106 n n C02 H2 EJW sing 107 n n C03 H3 EJW sing 108 n n C05 H4 EJW sing 109 n n C06 H5 EJW sing 110 n n C08 H6 EJW sing 111 n n C12 H7 EJW sing 112 n n C12 H8 EJW sing 113 n n N13 H9 EJW sing 114 n n N13 H10 EJW sing 115 n n N13 H11 EJW sing 116 n n # _atom_sites.entry_id 7B98 _atom_sites.fract_transf_matrix[1][1] 0.016439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 2 SO4 A 1 503 1 SO4 SO4 . E 2 SO4 A 1 504 8 SO4 SO4 . F 2 SO4 A 1 505 9 SO4 SO4 . G 2 SO4 A 1 506 10 SO4 SO4 . H 2 SO4 A 1 507 11 SO4 SO4 . I 2 SO4 A 1 508 12 SO4 SO4 . J 4 EDO A 1 509 4 EDO EDO . K 4 EDO A 1 510 8 EDO EDO . L 5 EJW A 1 511 1 EJW LIG . M 6 HOH A 1 601 23 HOH HOH . M 6 HOH A 2 602 1046 HOH HOH . M 6 HOH A 3 603 54 HOH HOH . M 6 HOH A 4 604 1008 HOH HOH . M 6 HOH A 5 605 27 HOH HOH . M 6 HOH A 6 606 1033 HOH HOH . M 6 HOH A 7 607 1018 HOH HOH . M 6 HOH A 8 608 1027 HOH HOH . M 6 HOH A 9 609 1016 HOH HOH . M 6 HOH A 10 610 1001 HOH HOH . M 6 HOH A 11 611 1047 HOH HOH . M 6 HOH A 12 612 22 HOH HOH . M 6 HOH A 13 613 1149 HOH HOH . M 6 HOH A 14 614 32 HOH HOH . M 6 HOH A 15 615 1048 HOH HOH . M 6 HOH A 16 616 1004 HOH HOH . M 6 HOH A 17 617 1058 HOH HOH . M 6 HOH A 18 618 1031 HOH HOH . M 6 HOH A 19 619 1118 HOH HOH . M 6 HOH A 20 620 36 HOH HOH . M 6 HOH A 21 621 1082 HOH HOH . M 6 HOH A 22 622 1092 HOH HOH . M 6 HOH A 23 623 1045 HOH HOH . M 6 HOH A 24 624 1003 HOH HOH . M 6 HOH A 25 625 57 HOH HOH . M 6 HOH A 26 626 1196 HOH HOH . M 6 HOH A 27 627 1012 HOH HOH . M 6 HOH A 28 628 1007 HOH HOH . M 6 HOH A 29 629 1029 HOH HOH . M 6 HOH A 30 630 14 HOH HOH . M 6 HOH A 31 631 1081 HOH HOH . M 6 HOH A 32 632 11 HOH HOH . M 6 HOH A 33 633 1040 HOH HOH . M 6 HOH A 34 634 1073 HOH HOH . M 6 HOH A 35 635 1064 HOH HOH . M 6 HOH A 36 636 1051 HOH HOH . M 6 HOH A 37 637 12 HOH HOH . M 6 HOH A 38 638 1085 HOH HOH . M 6 HOH A 39 639 1043 HOH HOH . M 6 HOH A 40 640 1190 HOH HOH . M 6 HOH A 41 641 1065 HOH HOH . M 6 HOH A 42 642 56 HOH HOH . M 6 HOH A 43 643 1036 HOH HOH . M 6 HOH A 44 644 18 HOH HOH . M 6 HOH A 45 645 1052 HOH HOH . M 6 HOH A 46 646 13 HOH HOH . M 6 HOH A 47 647 1114 HOH HOH . M 6 HOH A 48 648 1019 HOH HOH . M 6 HOH A 49 649 1199 HOH HOH . M 6 HOH A 50 650 1197 HOH HOH . M 6 HOH A 51 651 58 HOH HOH . M 6 HOH A 52 652 1020 HOH HOH . M 6 HOH A 53 653 1098 HOH HOH . M 6 HOH A 54 654 1059 HOH HOH . M 6 HOH A 55 655 1011 HOH HOH . M 6 HOH A 56 656 17 HOH HOH . M 6 HOH A 57 657 1049 HOH HOH . M 6 HOH A 58 658 1068 HOH HOH . M 6 HOH A 59 659 1006 HOH HOH . M 6 HOH A 60 660 20 HOH HOH . M 6 HOH A 61 661 1035 HOH HOH . M 6 HOH A 62 662 1063 HOH HOH . M 6 HOH A 63 663 1071 HOH HOH . M 6 HOH A 64 664 1002 HOH HOH . M 6 HOH A 65 665 1038 HOH HOH . M 6 HOH A 66 666 1062 HOH HOH . M 6 HOH A 67 667 1119 HOH HOH . M 6 HOH A 68 668 1093 HOH HOH . M 6 HOH A 69 669 1037 HOH HOH . M 6 HOH A 70 670 21 HOH HOH . M 6 HOH A 71 671 1017 HOH HOH . M 6 HOH A 72 672 1015 HOH HOH . M 6 HOH A 73 673 1041 HOH HOH . M 6 HOH A 74 674 15 HOH HOH . M 6 HOH A 75 675 1030 HOH HOH . M 6 HOH A 76 676 4 HOH HOH . M 6 HOH A 77 677 1150 HOH HOH . M 6 HOH A 78 678 1005 HOH HOH . M 6 HOH A 79 679 1148 HOH HOH . M 6 HOH A 80 680 1106 HOH HOH . M 6 HOH A 81 681 1109 HOH HOH . M 6 HOH A 82 682 1067 HOH HOH . M 6 HOH A 83 683 25 HOH HOH . M 6 HOH A 84 684 43 HOH HOH . M 6 HOH A 85 685 1014 HOH HOH . M 6 HOH A 86 686 1077 HOH HOH . M 6 HOH A 87 687 1010 HOH HOH . M 6 HOH A 88 688 1026 HOH HOH . M 6 HOH A 89 689 26 HOH HOH . M 6 HOH A 90 690 1142 HOH HOH . M 6 HOH A 91 691 40 HOH HOH . M 6 HOH A 92 692 7 HOH HOH . M 6 HOH A 93 693 1078 HOH HOH . M 6 HOH A 94 694 30 HOH HOH . M 6 HOH A 95 695 1039 HOH HOH . M 6 HOH A 96 696 1079 HOH HOH . M 6 HOH A 97 697 1140 HOH HOH . M 6 HOH A 98 698 59 HOH HOH . M 6 HOH A 99 699 1091 HOH HOH . M 6 HOH A 100 700 1013 HOH HOH . M 6 HOH A 101 701 1120 HOH HOH . M 6 HOH A 102 702 1023 HOH HOH . M 6 HOH A 103 703 1057 HOH HOH . M 6 HOH A 104 704 1115 HOH HOH . M 6 HOH A 105 705 1042 HOH HOH . M 6 HOH A 106 706 1113 HOH HOH . M 6 HOH A 107 707 19 HOH HOH . M 6 HOH A 108 708 47 HOH HOH . M 6 HOH A 109 709 42 HOH HOH . M 6 HOH A 110 710 44 HOH HOH . M 6 HOH A 111 711 33 HOH HOH . M 6 HOH A 112 712 1112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 EJW . A . L 5 -0.662 -6.807 5.313 0.6 25.7 ? C01 EJW 511 A 1 HETATM 2 C C01 EJW . B . L 5 -0.477 -6.866 5.359 0.4 25.8 ? C01 EJW 511 A 1 HETATM 3 C C02 EJW . A . L 5 -0.477 -5.623 4.613 0.6 28.87 ? C02 EJW 511 A 1 HETATM 4 C C02 EJW . B . L 5 -0.338 -5.672 4.667 0.4 29.02 ? C02 EJW 511 A 1 HETATM 5 C C03 EJW . A . L 5 0.71 -4.92 4.758 0.6 28.48 ? C03 EJW 511 A 1 HETATM 6 C C03 EJW . B . L 5 0.83 -4.937 4.793 0.4 28.41 ? C03 EJW 511 A 1 HETATM 7 C C04 EJW . A . L 5 1.71 -5.39 5.599 0.6 27.58 ? C04 EJW 511 A 1 HETATM 8 C C04 EJW . B . L 5 1.86 -5.387 5.608 0.4 27.61 ? C04 EJW 511 A 1 HETATM 9 C C05 EJW . A . L 5 1.525 -6.58 6.29 0.6 30.38 ? C05 EJW 511 A 1 HETATM 10 C C05 EJW . B . L 5 1.72 -6.584 6.297 0.4 30.1 ? C05 EJW 511 A 1 HETATM 11 C C06 EJW . A . L 5 0.339 -7.286 6.146 0.6 25.55 ? C06 EJW 511 A 1 HETATM 12 C C06 EJW . B . L 5 0.552 -7.322 6.17 0.4 25.46 ? C06 EJW 511 A 1 HETATM 13 C C07 EJW . A . L 5 2.89 -4.662 5.706 0.6 28.25 ? C07 EJW 511 A 1 HETATM 14 C C07 EJW . B . L 5 3.019 -4.627 5.707 0.4 28.13 ? C07 EJW 511 A 1 HETATM 15 C C08 EJW . A . L 5 4.187 -5.153 5.598 0.6 23.62 ? C08 EJW 511 A 1 HETATM 16 C C08 EJW . B . L 5 4.324 -5.09 5.846 0.4 22.57 ? C08 EJW 511 A 1 HETATM 17 C C09 EJW . A . L 5 5.045 -4.071 5.741 0.6 24.95 ? C09 EJW 511 A 1 HETATM 18 C C09 EJW . B . L 5 5.145 -3.97 5.881 0.4 25.1 ? C09 EJW 511 A 1 HETATM 19 C C12 EJW . A . L 5 6.575 -4.084 5.705 0.6 24.9 ? C12 EJW 511 A 1 HETATM 20 C C12 EJW . B . L 5 6.669 -3.925 6.035 0.4 26 ? C12 EJW 511 A 1 HETATM 21 N N11 EJW . A . L 5 2.968 -3.357 5.896 0.6 25.74 ? N11 EJW 511 A 1 HETATM 22 N N11 EJW . B . L 5 3.058 -3.308 5.661 0.4 26.64 ? N11 EJW 511 A 1 HETATM 23 N N13 EJW . A . L 5 7.094 -2.736 5.516 0.6 14.2 ? N13 EJW 511 A 1 HETATM 24 N N13 EJW . B . L 5 7.31 -5.122 5.526 0.4 14.04 ? N13 EJW 511 A 1 HETATM 25 O O10 EJW . A . L 5 4.277 -2.985 5.922 0.6 24.63 ? O10 EJW 511 A 1 HETATM 26 O O10 EJW . B . L 5 4.348 -2.895 5.77 0.4 24.24 ? O10 EJW 511 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #