data_7BAC
#
_model_server_result.job_id            vGg6JXv1i67qGrQ3N3vDrw 
_model_server_result.datetime_utc      '2024-11-01 01:32:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bac 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":509}' 
#
_entry.id    7BAC 
#
_exptl.entry_id    7BAC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              235.279 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(1,3-benzodioxol-5-yl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BAC 
_cell.length_a            60.403 
_cell.length_b            72.235 
_cell.length_c            78.696 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BAC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomer 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf5 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf6 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf7 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf8 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C13 H17 N O3' 
_chem_comp.formula_weight    235.279 
_chem_comp.id                LO5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(1,3-benzodioxol-5-yl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 O2 LO5 sing 203 n n 
C12 O1 LO5 sing 204 n n 
O2 C2 LO5 sing 205 n n 
O1 C3 LO5 sing 206 n n 
C2 C3 LO5 doub 207 n y 
C2 C1 LO5 sing 208 n y 
C3 C4 LO5 sing 209 n y 
C10 C11 LO5 sing 210 n n 
C10 C9 LO5 sing 211 n n 
C11 O LO5 sing 212 n n 
C1 C LO5 doub 213 n y 
C4 C5 LO5 doub 214 n y 
O C8 LO5 sing 215 n n 
C9 C8 LO5 sing 216 n n 
C8 C7 LO5 sing 217 n n 
C C5 LO5 sing 218 n y 
C5 C6 LO5 sing 219 n n 
C7 N LO5 sing 220 n n 
N C6 LO5 sing 221 n n 
C4 H1 LO5 sing 222 n n 
C6 H2 LO5 sing 223 n n 
C6 H3 LO5 sing 224 n n 
C7 H4 LO5 sing 225 n n 
C7 H5 LO5 sing 226 n n 
C8 H6 LO5 sing 227 n n 
C10 H7 LO5 sing 228 n n 
C10 H8 LO5 sing 229 n n 
N H9 LO5 sing 230 n n 
C H11 LO5 sing 231 n n 
C1 H12 LO5 sing 232 n n 
C11 H13 LO5 sing 233 n n 
C11 H14 LO5 sing 234 n n 
C12 H15 LO5 sing 235 n n 
C9 H16 LO5 sing 236 n n 
C9 H17 LO5 sing 237 n n 
C12 H10 LO5 sing 238 n n 
#
_atom_sites.entry_id                     7BAC 
_atom_sites.fract_transf_matrix[1][1]    0.016555 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013844 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012707 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 501 602 SO4 SO4 . 
C 3 NAG A 1 502 1452 NAG NAG . 
D 4 DMS A 1 503 1501 DMS DMS . 
E 2 SO4 A 1 504 1 SO4 SO4 . 
F 2 SO4 A 1 505 8 SO4 SO4 . 
G 2 SO4 A 1 506 9 SO4 SO4 . 
H 2 SO4 A 1 507 10 SO4 SO4 . 
I 5 LO5 A 1 508 1 LO5 LIG . 
J 5 LO5 A 1 509 2 LO5 LIG . 
K 6 HOH A 1 601 1086 HOH HOH . 
K 6 HOH A 2 602 1092 HOH HOH . 
K 6 HOH A 3 603 40 HOH HOH . 
K 6 HOH A 4 604 1018 HOH HOH . 
K 6 HOH A 5 605 1046 HOH HOH . 
K 6 HOH A 6 606 1149 HOH HOH . 
K 6 HOH A 7 607 1097 HOH HOH . 
K 6 HOH A 8 608 54 HOH HOH . 
K 6 HOH A 9 609 1033 HOH HOH . 
K 6 HOH A 10 610 1027 HOH HOH . 
K 6 HOH A 11 611 1045 HOH HOH . 
K 6 HOH A 12 612 1123 HOH HOH . 
K 6 HOH A 13 613 1041 HOH HOH . 
K 6 HOH A 14 614 1031 HOH HOH . 
K 6 HOH A 15 615 1058 HOH HOH . 
K 6 HOH A 16 616 1001 HOH HOH . 
K 6 HOH A 17 617 1050 HOH HOH . 
K 6 HOH A 18 618 1085 HOH HOH . 
K 6 HOH A 19 619 1093 HOH HOH . 
K 6 HOH A 20 620 1047 HOH HOH . 
K 6 HOH A 21 621 1091 HOH HOH . 
K 6 HOH A 22 622 18 HOH HOH . 
K 6 HOH A 23 623 1197 HOH HOH . 
K 6 HOH A 24 624 1004 HOH HOH . 
K 6 HOH A 25 625 1029 HOH HOH . 
K 6 HOH A 26 626 1051 HOH HOH . 
K 6 HOH A 27 627 1016 HOH HOH . 
K 6 HOH A 28 628 1036 HOH HOH . 
K 6 HOH A 29 629 1059 HOH HOH . 
K 6 HOH A 30 630 1118 HOH HOH . 
K 6 HOH A 31 631 36 HOH HOH . 
K 6 HOH A 32 632 37 HOH HOH . 
K 6 HOH A 33 633 1082 HOH HOH . 
K 6 HOH A 34 634 27 HOH HOH . 
K 6 HOH A 35 635 1145 HOH HOH . 
K 6 HOH A 36 636 21 HOH HOH . 
K 6 HOH A 37 637 4 HOH HOH . 
K 6 HOH A 38 638 1196 HOH HOH . 
K 6 HOH A 39 639 1043 HOH HOH . 
K 6 HOH A 40 640 1190 HOH HOH . 
K 6 HOH A 41 641 1008 HOH HOH . 
K 6 HOH A 42 642 1114 HOH HOH . 
K 6 HOH A 43 643 1037 HOH HOH . 
K 6 HOH A 44 644 20 HOH HOH . 
K 6 HOH A 45 645 56 HOH HOH . 
K 6 HOH A 46 646 1048 HOH HOH . 
K 6 HOH A 47 647 1068 HOH HOH . 
K 6 HOH A 48 648 1040 HOH HOH . 
K 6 HOH A 49 649 1007 HOH HOH . 
K 6 HOH A 50 650 11 HOH HOH . 
K 6 HOH A 51 651 12 HOH HOH . 
K 6 HOH A 52 652 57 HOH HOH . 
K 6 HOH A 53 653 1074 HOH HOH . 
K 6 HOH A 54 654 1012 HOH HOH . 
K 6 HOH A 55 655 1064 HOH HOH . 
K 6 HOH A 56 656 1073 HOH HOH . 
K 6 HOH A 57 657 1002 HOH HOH . 
K 6 HOH A 58 658 1063 HOH HOH . 
K 6 HOH A 59 659 1003 HOH HOH . 
K 6 HOH A 60 660 1065 HOH HOH . 
K 6 HOH A 61 661 1109 HOH HOH . 
K 6 HOH A 62 662 26 HOH HOH . 
K 6 HOH A 63 663 1077 HOH HOH . 
K 6 HOH A 64 664 1071 HOH HOH . 
K 6 HOH A 65 665 1013 HOH HOH . 
K 6 HOH A 66 666 1052 HOH HOH . 
K 6 HOH A 67 667 1015 HOH HOH . 
K 6 HOH A 68 668 1057 HOH HOH . 
K 6 HOH A 69 669 1006 HOH HOH . 
K 6 HOH A 70 670 14 HOH HOH . 
K 6 HOH A 71 671 1011 HOH HOH . 
K 6 HOH A 72 672 1023 HOH HOH . 
K 6 HOH A 73 673 1020 HOH HOH . 
K 6 HOH A 74 674 16 HOH HOH . 
K 6 HOH A 75 675 1005 HOH HOH . 
K 6 HOH A 76 676 15 HOH HOH . 
K 6 HOH A 77 677 1026 HOH HOH . 
K 6 HOH A 78 678 1014 HOH HOH . 
K 6 HOH A 79 679 30 HOH HOH . 
K 6 HOH A 80 680 17 HOH HOH . 
K 6 HOH A 81 681 1067 HOH HOH . 
K 6 HOH A 82 682 1030 HOH HOH . 
K 6 HOH A 83 683 1124 HOH HOH . 
K 6 HOH A 84 684 1106 HOH HOH . 
K 6 HOH A 85 685 1150 HOH HOH . 
K 6 HOH A 86 686 1035 HOH HOH . 
K 6 HOH A 87 687 1079 HOH HOH . 
K 6 HOH A 88 688 1017 HOH HOH . 
K 6 HOH A 89 689 1039 HOH HOH . 
K 6 HOH A 90 690 1049 HOH HOH . 
K 6 HOH A 91 691 1078 HOH HOH . 
K 6 HOH A 92 692 1142 HOH HOH . 
K 6 HOH A 93 693 1010 HOH HOH . 
K 6 HOH A 94 694 1042 HOH HOH . 
K 6 HOH A 95 695 1081 HOH HOH . 
K 6 HOH A 96 696 1115 HOH HOH . 
K 6 HOH A 97 697 1080 HOH HOH . 
K 6 HOH A 98 698 29 HOH HOH . 
K 6 HOH A 99 699 1066 HOH HOH . 
K 6 HOH A 100 700 47 HOH HOH . 
K 6 HOH A 101 701 42 HOH HOH . 
K 6 HOH A 102 702 1153 HOH HOH . 
K 6 HOH A 103 703 1152 HOH HOH . 
K 6 HOH A 104 704 1112 HOH HOH . 
K 6 HOH A 105 705 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 LO5 . . . J 5 5.744 16.686 16.977 1 29.85 ? C4 LO5 509 A 1 
HETATM 2 C C5 LO5 . . . J 5 6.037 17.985 17.376 1 43.74 ? C5 LO5 509 A 1 
HETATM 3 C C6 LO5 . . . J 5 7.495 18.442 17.479 1 38.31 ? C6 LO5 509 A 1 
HETATM 4 C C7 LO5 . . . J 5 7.828 18.901 15.156 1 42.17 ? C7 LO5 509 A 1 
HETATM 5 C C8 LO5 . . . J 5 8.023 19.983 14.134 1 46.53 ? C8 LO5 509 A 1 
HETATM 6 C C10 LO5 . . . J 5 10.118 20.189 12.997 1 55.18 ? C10 LO5 509 A 1 
HETATM 7 N N LO5 . . . J 5 7.785 19.472 16.493 1 40.41 ? N LO5 509 A 1 
HETATM 8 C C LO5 . . . J 5 4.997 18.861 17.686 1 38.24 ? C LO5 509 A 1 
HETATM 9 O O LO5 . . . J 5 7.723 19.547 12.943 1 47.72 ? O LO5 509 A 1 
HETATM 10 C C1 LO5 . . . J 5 3.679 18.437 17.59 1 33.3 ? C1 LO5 509 A 1 
HETATM 11 C C11 LO5 . . . J 5 8.921 19.89 12.026 1 46.03 ? C11 LO5 509 A 1 
HETATM 12 C C12 LO5 . . . J 5 2.446 15.184 16.417 1 30.96 ? C12 LO5 509 A 1 
HETATM 13 C C2 LO5 . . . J 5 3.38 17.113 17.182 1 28.42 ? C2 LO5 509 A 1 
HETATM 14 C C3 LO5 . . . J 5 4.396 16.255 16.88 1 28.74 ? C3 LO5 509 A 1 
HETATM 15 C C9 LO5 . . . J 5 9.608 20.468 14.141 1 46.51 ? C9 LO5 509 A 1 
HETATM 16 O O1 LO5 . . . J 5 3.837 15.009 16.501 1 35.95 ? O1 LO5 509 A 1 
HETATM 17 O O2 LO5 . . . J 5 2.156 16.428 17.006 1 35.03 ? O2 LO5 509 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           17 
#