data_7BAC # _model_server_result.job_id 4mDGU2_SPaq3nL8kQYkftw _model_server_result.datetime_utc '2024-11-23 02:30:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 7BAC # _exptl.entry_id 7BAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 235.279 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1,3-benzodioxol-5-yl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BAC _cell.length_a 60.403 _cell.length_b 72.235 _cell.length_c 78.696 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomer _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.016 ? disulf ? disulf5 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf7 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C13 H17 N O3' _chem_comp.formula_weight 235.279 _chem_comp.id LO5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1,3-benzodioxol-5-yl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 O2 LO5 sing 203 n n C12 O1 LO5 sing 204 n n O2 C2 LO5 sing 205 n n O1 C3 LO5 sing 206 n n C2 C3 LO5 doub 207 n y C2 C1 LO5 sing 208 n y C3 C4 LO5 sing 209 n y C10 C11 LO5 sing 210 n n C10 C9 LO5 sing 211 n n C11 O LO5 sing 212 n n C1 C LO5 doub 213 n y C4 C5 LO5 doub 214 n y O C8 LO5 sing 215 n n C9 C8 LO5 sing 216 n n C8 C7 LO5 sing 217 n n C C5 LO5 sing 218 n y C5 C6 LO5 sing 219 n n C7 N LO5 sing 220 n n N C6 LO5 sing 221 n n C4 H1 LO5 sing 222 n n C6 H2 LO5 sing 223 n n C6 H3 LO5 sing 224 n n C7 H4 LO5 sing 225 n n C7 H5 LO5 sing 226 n n C8 H6 LO5 sing 227 n n C10 H7 LO5 sing 228 n n C10 H8 LO5 sing 229 n n N H9 LO5 sing 230 n n C H11 LO5 sing 231 n n C1 H12 LO5 sing 232 n n C11 H13 LO5 sing 233 n n C11 H14 LO5 sing 234 n n C12 H15 LO5 sing 235 n n C9 H16 LO5 sing 236 n n C9 H17 LO5 sing 237 n n C12 H10 LO5 sing 238 n n # _atom_sites.entry_id 7BAC _atom_sites.fract_transf_matrix[1][1] 0.016555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 DMS A 1 503 1501 DMS DMS . E 2 SO4 A 1 504 1 SO4 SO4 . F 2 SO4 A 1 505 8 SO4 SO4 . G 2 SO4 A 1 506 9 SO4 SO4 . H 2 SO4 A 1 507 10 SO4 SO4 . I 5 LO5 A 1 508 1 LO5 LIG . J 5 LO5 A 1 509 2 LO5 LIG . K 6 HOH A 1 601 1086 HOH HOH . K 6 HOH A 2 602 1092 HOH HOH . K 6 HOH A 3 603 40 HOH HOH . K 6 HOH A 4 604 1018 HOH HOH . K 6 HOH A 5 605 1046 HOH HOH . K 6 HOH A 6 606 1149 HOH HOH . K 6 HOH A 7 607 1097 HOH HOH . K 6 HOH A 8 608 54 HOH HOH . K 6 HOH A 9 609 1033 HOH HOH . K 6 HOH A 10 610 1027 HOH HOH . K 6 HOH A 11 611 1045 HOH HOH . K 6 HOH A 12 612 1123 HOH HOH . K 6 HOH A 13 613 1041 HOH HOH . K 6 HOH A 14 614 1031 HOH HOH . K 6 HOH A 15 615 1058 HOH HOH . K 6 HOH A 16 616 1001 HOH HOH . K 6 HOH A 17 617 1050 HOH HOH . K 6 HOH A 18 618 1085 HOH HOH . K 6 HOH A 19 619 1093 HOH HOH . K 6 HOH A 20 620 1047 HOH HOH . K 6 HOH A 21 621 1091 HOH HOH . K 6 HOH A 22 622 18 HOH HOH . K 6 HOH A 23 623 1197 HOH HOH . K 6 HOH A 24 624 1004 HOH HOH . K 6 HOH A 25 625 1029 HOH HOH . K 6 HOH A 26 626 1051 HOH HOH . K 6 HOH A 27 627 1016 HOH HOH . K 6 HOH A 28 628 1036 HOH HOH . K 6 HOH A 29 629 1059 HOH HOH . K 6 HOH A 30 630 1118 HOH HOH . K 6 HOH A 31 631 36 HOH HOH . K 6 HOH A 32 632 37 HOH HOH . K 6 HOH A 33 633 1082 HOH HOH . K 6 HOH A 34 634 27 HOH HOH . K 6 HOH A 35 635 1145 HOH HOH . K 6 HOH A 36 636 21 HOH HOH . K 6 HOH A 37 637 4 HOH HOH . K 6 HOH A 38 638 1196 HOH HOH . K 6 HOH A 39 639 1043 HOH HOH . K 6 HOH A 40 640 1190 HOH HOH . K 6 HOH A 41 641 1008 HOH HOH . K 6 HOH A 42 642 1114 HOH HOH . K 6 HOH A 43 643 1037 HOH HOH . K 6 HOH A 44 644 20 HOH HOH . K 6 HOH A 45 645 56 HOH HOH . K 6 HOH A 46 646 1048 HOH HOH . K 6 HOH A 47 647 1068 HOH HOH . K 6 HOH A 48 648 1040 HOH HOH . K 6 HOH A 49 649 1007 HOH HOH . K 6 HOH A 50 650 11 HOH HOH . K 6 HOH A 51 651 12 HOH HOH . K 6 HOH A 52 652 57 HOH HOH . K 6 HOH A 53 653 1074 HOH HOH . K 6 HOH A 54 654 1012 HOH HOH . K 6 HOH A 55 655 1064 HOH HOH . K 6 HOH A 56 656 1073 HOH HOH . K 6 HOH A 57 657 1002 HOH HOH . K 6 HOH A 58 658 1063 HOH HOH . K 6 HOH A 59 659 1003 HOH HOH . K 6 HOH A 60 660 1065 HOH HOH . K 6 HOH A 61 661 1109 HOH HOH . K 6 HOH A 62 662 26 HOH HOH . K 6 HOH A 63 663 1077 HOH HOH . K 6 HOH A 64 664 1071 HOH HOH . K 6 HOH A 65 665 1013 HOH HOH . K 6 HOH A 66 666 1052 HOH HOH . K 6 HOH A 67 667 1015 HOH HOH . K 6 HOH A 68 668 1057 HOH HOH . K 6 HOH A 69 669 1006 HOH HOH . K 6 HOH A 70 670 14 HOH HOH . K 6 HOH A 71 671 1011 HOH HOH . K 6 HOH A 72 672 1023 HOH HOH . K 6 HOH A 73 673 1020 HOH HOH . K 6 HOH A 74 674 16 HOH HOH . K 6 HOH A 75 675 1005 HOH HOH . K 6 HOH A 76 676 15 HOH HOH . K 6 HOH A 77 677 1026 HOH HOH . K 6 HOH A 78 678 1014 HOH HOH . K 6 HOH A 79 679 30 HOH HOH . K 6 HOH A 80 680 17 HOH HOH . K 6 HOH A 81 681 1067 HOH HOH . K 6 HOH A 82 682 1030 HOH HOH . K 6 HOH A 83 683 1124 HOH HOH . K 6 HOH A 84 684 1106 HOH HOH . K 6 HOH A 85 685 1150 HOH HOH . K 6 HOH A 86 686 1035 HOH HOH . K 6 HOH A 87 687 1079 HOH HOH . K 6 HOH A 88 688 1017 HOH HOH . K 6 HOH A 89 689 1039 HOH HOH . K 6 HOH A 90 690 1049 HOH HOH . K 6 HOH A 91 691 1078 HOH HOH . K 6 HOH A 92 692 1142 HOH HOH . K 6 HOH A 93 693 1010 HOH HOH . K 6 HOH A 94 694 1042 HOH HOH . K 6 HOH A 95 695 1081 HOH HOH . K 6 HOH A 96 696 1115 HOH HOH . K 6 HOH A 97 697 1080 HOH HOH . K 6 HOH A 98 698 29 HOH HOH . K 6 HOH A 99 699 1066 HOH HOH . K 6 HOH A 100 700 47 HOH HOH . K 6 HOH A 101 701 42 HOH HOH . K 6 HOH A 102 702 1153 HOH HOH . K 6 HOH A 103 703 1152 HOH HOH . K 6 HOH A 104 704 1112 HOH HOH . K 6 HOH A 105 705 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 LO5 . . . J 5 5.744 16.686 16.977 1 29.85 ? C4 LO5 509 A 1 HETATM 2 C C5 LO5 . . . J 5 6.037 17.985 17.376 1 43.74 ? C5 LO5 509 A 1 HETATM 3 C C6 LO5 . . . J 5 7.495 18.442 17.479 1 38.31 ? C6 LO5 509 A 1 HETATM 4 C C7 LO5 . . . J 5 7.828 18.901 15.156 1 42.17 ? C7 LO5 509 A 1 HETATM 5 C C8 LO5 . . . J 5 8.023 19.983 14.134 1 46.53 ? C8 LO5 509 A 1 HETATM 6 C C10 LO5 . . . J 5 10.118 20.189 12.997 1 55.18 ? C10 LO5 509 A 1 HETATM 7 N N LO5 . . . J 5 7.785 19.472 16.493 1 40.41 ? N LO5 509 A 1 HETATM 8 C C LO5 . . . J 5 4.997 18.861 17.686 1 38.24 ? C LO5 509 A 1 HETATM 9 O O LO5 . . . J 5 7.723 19.547 12.943 1 47.72 ? O LO5 509 A 1 HETATM 10 C C1 LO5 . . . J 5 3.679 18.437 17.59 1 33.3 ? C1 LO5 509 A 1 HETATM 11 C C11 LO5 . . . J 5 8.921 19.89 12.026 1 46.03 ? C11 LO5 509 A 1 HETATM 12 C C12 LO5 . . . J 5 2.446 15.184 16.417 1 30.96 ? C12 LO5 509 A 1 HETATM 13 C C2 LO5 . . . J 5 3.38 17.113 17.182 1 28.42 ? C2 LO5 509 A 1 HETATM 14 C C3 LO5 . . . J 5 4.396 16.255 16.88 1 28.74 ? C3 LO5 509 A 1 HETATM 15 C C9 LO5 . . . J 5 9.608 20.468 14.141 1 46.51 ? C9 LO5 509 A 1 HETATM 16 O O1 LO5 . . . J 5 3.837 15.009 16.501 1 35.95 ? O1 LO5 509 A 1 HETATM 17 O O2 LO5 . . . J 5 2.156 16.428 17.006 1 35.03 ? O2 LO5 509 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #