data_7BAP
#
_model_server_result.job_id            28igzpPc-QuJzQS4rmOIwQ 
_model_server_result.datetime_utc      '2024-11-14 06:27:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bap 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    7BAP 
#
_exptl.entry_id    7BAP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              185.225 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}2-pyridin-2-ylbenzene-1,2-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BAP 
_cell.length_a            59.81 
_cell.length_b            73.67 
_cell.length_c            78.59 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BAP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 A OD2 ASP 204 A ASP 281 1_555 D C7 S4V . A S4V 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
#
_chem_comp.formula           'C11 H11 N3' 
_chem_comp.formula_weight    185.225 
_chem_comp.id                S4V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}2-pyridin-2-ylbenzene-1,2-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C5 S4V doub 316 n y 
C C1 S4V sing 317 n y 
C5 C4 S4V sing 318 n y 
C1 C2 S4V doub 319 n y 
C4 N S4V sing 320 n n 
C4 C3 S4V doub 321 n y 
C2 C3 S4V sing 322 n y 
C3 N1 S4V sing 323 n n 
N1 C6 S4V sing 324 n n 
C7 C6 S4V doub 325 n y 
C7 C8 S4V sing 326 n y 
C6 N2 S4V sing 327 n y 
C8 C9 S4V doub 328 n y 
N2 C10 S4V doub 329 n y 
C10 C9 S4V sing 330 n y 
N1 H1 S4V sing 331 n n 
C5 H2 S4V sing 332 n n 
C7 H3 S4V sing 333 n n 
C8 H4 S4V sing 334 n n 
C10 H5 S4V sing 335 n n 
N H6 S4V sing 336 n n 
N H7 S4V sing 337 n n 
C H8 S4V sing 338 n n 
C1 H9 S4V sing 339 n n 
C2 H10 S4V sing 340 n n 
C9 H11 S4V sing 341 n n 
#
_atom_sites.entry_id                     7BAP 
_atom_sites.fract_transf_matrix[1][1]    0.01672 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012724 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 501 602 SO4 SO4 . 
C 3 NAG A 1 502 1452 NAG NAG . 
D 4 S4V A 1 503 1601 S4V XXX . 
E 4 S4V A 1 504 1701 S4V XXX . 
F 5 DMS A 1 505 1801 DMS DMS . 
G 5 DMS A 1 506 1901 DMS DMS . 
H 5 DMS A 1 507 2001 DMS DMS . 
I 2 SO4 A 1 508 8 SO4 SO4 . 
J 2 SO4 A 1 509 11 SO4 SO4 . 
K 2 SO4 A 1 510 12 SO4 SO4 . 
L 6 HOH A 1 601 23 HOH HOH . 
L 6 HOH A 2 602 61 HOH HOH . 
L 6 HOH A 3 603 59 HOH HOH . 
L 6 HOH A 4 604 1047 HOH HOH . 
L 6 HOH A 5 605 1045 HOH HOH . 
L 6 HOH A 6 606 1082 HOH HOH . 
L 6 HOH A 7 607 1050 HOH HOH . 
L 6 HOH A 8 608 1027 HOH HOH . 
L 6 HOH A 9 609 1059 HOH HOH . 
L 6 HOH A 10 610 36 HOH HOH . 
L 6 HOH A 11 611 40 HOH HOH . 
L 6 HOH A 12 612 1038 HOH HOH . 
L 6 HOH A 13 613 1031 HOH HOH . 
L 6 HOH A 14 614 32 HOH HOH . 
L 6 HOH A 15 615 1123 HOH HOH . 
L 6 HOH A 16 616 1190 HOH HOH . 
L 6 HOH A 17 617 1001 HOH HOH . 
L 6 HOH A 18 618 1118 HOH HOH . 
L 6 HOH A 19 619 1086 HOH HOH . 
L 6 HOH A 20 620 1036 HOH HOH . 
L 6 HOH A 21 621 1033 HOH HOH . 
L 6 HOH A 22 622 1003 HOH HOH . 
L 6 HOH A 23 623 1048 HOH HOH . 
L 6 HOH A 24 624 1016 HOH HOH . 
L 6 HOH A 25 625 1008 HOH HOH . 
L 6 HOH A 26 626 1091 HOH HOH . 
L 6 HOH A 27 627 1007 HOH HOH . 
L 6 HOH A 28 628 1004 HOH HOH . 
L 6 HOH A 29 629 1073 HOH HOH . 
L 6 HOH A 30 630 1085 HOH HOH . 
L 6 HOH A 31 631 1043 HOH HOH . 
L 6 HOH A 32 632 1052 HOH HOH . 
L 6 HOH A 33 633 1197 HOH HOH . 
L 6 HOH A 34 634 1040 HOH HOH . 
L 6 HOH A 35 635 56 HOH HOH . 
L 6 HOH A 36 636 1017 HOH HOH . 
L 6 HOH A 37 637 1074 HOH HOH . 
L 6 HOH A 38 638 1029 HOH HOH . 
L 6 HOH A 39 639 57 HOH HOH . 
L 6 HOH A 40 640 12 HOH HOH . 
L 6 HOH A 41 641 1109 HOH HOH . 
L 6 HOH A 42 642 1051 HOH HOH . 
L 6 HOH A 43 643 18 HOH HOH . 
L 6 HOH A 44 644 1199 HOH HOH . 
L 6 HOH A 45 645 1058 HOH HOH . 
L 6 HOH A 46 646 1081 HOH HOH . 
L 6 HOH A 47 647 1149 HOH HOH . 
L 6 HOH A 48 648 1012 HOH HOH . 
L 6 HOH A 49 649 26 HOH HOH . 
L 6 HOH A 50 650 1198 HOH HOH . 
L 6 HOH A 51 651 21 HOH HOH . 
L 6 HOH A 52 652 1065 HOH HOH . 
L 6 HOH A 53 653 4 HOH HOH . 
L 6 HOH A 54 654 1150 HOH HOH . 
L 6 HOH A 55 655 1114 HOH HOH . 
L 6 HOH A 56 656 1064 HOH HOH . 
L 6 HOH A 57 657 11 HOH HOH . 
L 6 HOH A 58 658 1005 HOH HOH . 
L 6 HOH A 59 659 1023 HOH HOH . 
L 6 HOH A 60 660 1106 HOH HOH . 
L 6 HOH A 61 661 1002 HOH HOH . 
L 6 HOH A 62 662 1011 HOH HOH . 
L 6 HOH A 63 663 1083 HOH HOH . 
L 6 HOH A 64 664 1098 HOH HOH . 
L 6 HOH A 65 665 1037 HOH HOH . 
L 6 HOH A 66 666 1079 HOH HOH . 
L 6 HOH A 67 667 14 HOH HOH . 
L 6 HOH A 68 668 1142 HOH HOH . 
L 6 HOH A 69 669 1020 HOH HOH . 
L 6 HOH A 70 670 1049 HOH HOH . 
L 6 HOH A 71 671 58 HOH HOH . 
L 6 HOH A 72 672 1063 HOH HOH . 
L 6 HOH A 73 673 1035 HOH HOH . 
L 6 HOH A 74 674 1078 HOH HOH . 
L 6 HOH A 75 675 1057 HOH HOH . 
L 6 HOH A 76 676 1015 HOH HOH . 
L 6 HOH A 77 677 1093 HOH HOH . 
L 6 HOH A 78 678 1030 HOH HOH . 
L 6 HOH A 79 679 1006 HOH HOH . 
L 6 HOH A 80 680 1026 HOH HOH . 
L 6 HOH A 81 681 1014 HOH HOH . 
L 6 HOH A 82 682 1041 HOH HOH . 
L 6 HOH A 83 683 34 HOH HOH . 
L 6 HOH A 84 684 16 HOH HOH . 
L 6 HOH A 85 685 1077 HOH HOH . 
L 6 HOH A 86 686 1120 HOH HOH . 
L 6 HOH A 87 687 1039 HOH HOH . 
L 6 HOH A 88 688 30 HOH HOH . 
L 6 HOH A 89 689 1092 HOH HOH . 
L 6 HOH A 90 690 1022 HOH HOH . 
L 6 HOH A 91 691 7 HOH HOH . 
L 6 HOH A 92 692 1080 HOH HOH . 
L 6 HOH A 93 693 1013 HOH HOH . 
L 6 HOH A 94 694 1042 HOH HOH . 
L 6 HOH A 95 695 29 HOH HOH . 
L 6 HOH A 96 696 60 HOH HOH . 
L 6 HOH A 97 697 42 HOH HOH . 
L 6 HOH A 98 698 1152 HOH HOH . 
L 6 HOH A 99 699 1153 HOH HOH . 
L 6 HOH A 100 700 1112 HOH HOH . 
L 6 HOH A 101 701 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 S4V . . . D 4 6.466 -2.214 16.211 1 42.02 ? N1 S4V 503 A 1 
HETATM 2 C C4 S4V . . . D 4 5.561 0.069 16.201 1 37.53 ? C4 S4V 503 A 1 
HETATM 3 C C5 S4V . . . D 4 5.687 1.419 16.487 1 32.72 ? C5 S4V 503 A 1 
HETATM 4 C C6 S4V . . . D 4 7.075 -2.867 15.086 1 33.65 ? C6 S4V 503 A 1 
HETATM 5 C C7 S4V . . . D 4 7.058 -4.291 15.035 1 36.8 ? C7 S4V 503 A 1 
HETATM 6 C C8 S4V . . . D 4 7.683 -4.821 13.879 1 35.41 ? C8 S4V 503 A 1 
HETATM 7 C C10 S4V . . . D 4 8.187 -2.58 13.1 1 34.62 ? C10 S4V 503 A 1 
HETATM 8 N N S4V . . . D 4 4.341 -0.432 15.59 1 35.37 ? N S4V 503 A 1 
HETATM 9 C C S4V . . . D 4 6.853 1.905 17.058 1 35.32 ? C S4V 503 A 1 
HETATM 10 C C1 S4V . . . D 4 7.899 1.04 17.348 1 38.93 ? C1 S4V 503 A 1 
HETATM 11 C C2 S4V . . . D 4 7.774 -0.31 17.059 1 36.52 ? C2 S4V 503 A 1 
HETATM 12 C C3 S4V . . . D 4 6.608 -0.793 16.485 1 35.47 ? C3 S4V 503 A 1 
HETATM 13 C C9 S4V . . . D 4 8.242 -3.97 12.921 1 34.59 ? C9 S4V 503 A 1 
HETATM 14 N N2 S4V . . . D 4 7.612 -2.053 14.173 1 39.53 ? N2 S4V 503 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#