data_7BBP
#
_model_server_result.job_id            S_CVPAb3Zfe7bAueZ4bxnQ 
_model_server_result.datetime_utc      '2024-11-26 04:05:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bbp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1501}' 
#
_entry.id    7BBP 
#
_exptl.entry_id    7BBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.08 
_cell.angle_gamma         90 
_cell.entry_id            7BBP 
_cell.length_a            69.21 
_cell.length_b            58.31 
_cell.length_c            77.12 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,F,G,J,M,O 1 1 
B,C,E,H,I,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E C GLY 4 FFF GLY 4 1_555 E N ALY 5 FFF ALY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 E C ALY 5 FFF ALY 5 1_555 E N GLY 6 FFF GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale3 E C GLY 7 FFF GLY 7 1_555 E N ALY 8 FFF ALY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 E C ALY 8 FFF ALY 8 1_555 E N LEU 10 FFF LEU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale5 F C GLY 4 GGG GLY 4 1_555 F N ALY 5 GGG ALY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale6 F C ALY 5 GGG ALY 5 1_555 F N GLY 6 GGG GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale7 F C GLY 7 GGG GLY 7 1_555 F N ALY 8 GGG ALY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale8 F C ALY 8 GGG ALY 8 1_555 F N LEU 10 GGG LEU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 117 n n 
C1 C2 EDO sing 118 n n 
C1 H11 EDO sing 119 n n 
C1 H12 EDO sing 120 n n 
O1 HO1 EDO sing 121 n n 
C2 O2 EDO sing 122 n n 
C2 H21 EDO sing 123 n n 
C2 H22 EDO sing 124 n n 
O2 HO2 EDO sing 125 n n 
#
_atom_sites.entry_id                     7BBP 
_atom_sites.fract_transf_matrix[1][1]    0.014449 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002309 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013131 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 EDO AAA 1 1501 1 EDO EDO . 
H 4 ACT BBB 1 1501 2 ACT ACT . 
I 4 ACT CCC 1 1501 1 ACT ACT . 
J 5 HOH AAA 1 1601 131 HOH HOH . 
J 5 HOH AAA 2 1602 144 HOH HOH . 
J 5 HOH AAA 3 1603 59 HOH HOH . 
J 5 HOH AAA 4 1604 83 HOH HOH . 
J 5 HOH AAA 5 1605 109 HOH HOH . 
J 5 HOH AAA 6 1606 43 HOH HOH . 
J 5 HOH AAA 7 1607 151 HOH HOH . 
J 5 HOH AAA 8 1608 99 HOH HOH . 
J 5 HOH AAA 9 1609 146 HOH HOH . 
J 5 HOH AAA 10 1610 16 HOH HOH . 
J 5 HOH AAA 11 1611 141 HOH HOH . 
J 5 HOH AAA 12 1612 80 HOH HOH . 
J 5 HOH AAA 13 1613 60 HOH HOH . 
J 5 HOH AAA 14 1614 132 HOH HOH . 
J 5 HOH AAA 15 1615 155 HOH HOH . 
J 5 HOH AAA 16 1616 72 HOH HOH . 
J 5 HOH AAA 17 1617 55 HOH HOH . 
J 5 HOH AAA 18 1618 160 HOH HOH . 
J 5 HOH AAA 19 1619 152 HOH HOH . 
J 5 HOH AAA 20 1620 133 HOH HOH . 
J 5 HOH AAA 21 1621 69 HOH HOH . 
J 5 HOH AAA 22 1622 135 HOH HOH . 
J 5 HOH AAA 23 1623 73 HOH HOH . 
J 5 HOH AAA 24 1624 78 HOH HOH . 
J 5 HOH AAA 25 1625 156 HOH HOH . 
J 5 HOH AAA 26 1626 106 HOH HOH . 
J 5 HOH AAA 27 1627 163 HOH HOH . 
J 5 HOH AAA 28 1628 13 HOH HOH . 
J 5 HOH AAA 29 1629 122 HOH HOH . 
J 5 HOH AAA 30 1630 166 HOH HOH . 
J 5 HOH AAA 31 1631 30 HOH HOH . 
J 5 HOH AAA 32 1632 81 HOH HOH . 
J 5 HOH AAA 33 1633 142 HOH HOH . 
J 5 HOH AAA 34 1634 85 HOH HOH . 
J 5 HOH AAA 35 1635 105 HOH HOH . 
J 5 HOH AAA 36 1636 138 HOH HOH . 
J 5 HOH AAA 37 1637 117 HOH HOH . 
J 5 HOH AAA 38 1638 71 HOH HOH . 
K 5 HOH BBB 1 1601 130 HOH HOH . 
K 5 HOH BBB 2 1602 82 HOH HOH . 
K 5 HOH BBB 3 1603 137 HOH HOH . 
K 5 HOH BBB 4 1604 28 HOH HOH . 
K 5 HOH BBB 5 1605 10 HOH HOH . 
K 5 HOH BBB 6 1606 115 HOH HOH . 
K 5 HOH BBB 7 1607 118 HOH HOH . 
K 5 HOH BBB 8 1608 100 HOH HOH . 
K 5 HOH BBB 9 1609 26 HOH HOH . 
K 5 HOH BBB 10 1610 11 HOH HOH . 
K 5 HOH BBB 11 1611 56 HOH HOH . 
K 5 HOH BBB 12 1612 159 HOH HOH . 
K 5 HOH BBB 13 1613 1 HOH HOH . 
K 5 HOH BBB 14 1614 104 HOH HOH . 
K 5 HOH BBB 15 1615 51 HOH HOH . 
K 5 HOH BBB 16 1616 154 HOH HOH . 
K 5 HOH BBB 17 1617 21 HOH HOH . 
K 5 HOH BBB 18 1618 53 HOH HOH . 
K 5 HOH BBB 19 1619 27 HOH HOH . 
K 5 HOH BBB 20 1620 67 HOH HOH . 
K 5 HOH BBB 21 1621 32 HOH HOH . 
K 5 HOH BBB 22 1622 61 HOH HOH . 
K 5 HOH BBB 23 1623 20 HOH HOH . 
K 5 HOH BBB 24 1624 147 HOH HOH . 
K 5 HOH BBB 25 1625 112 HOH HOH . 
K 5 HOH BBB 26 1626 70 HOH HOH . 
K 5 HOH BBB 27 1627 19 HOH HOH . 
K 5 HOH BBB 28 1628 35 HOH HOH . 
K 5 HOH BBB 29 1629 111 HOH HOH . 
K 5 HOH BBB 30 1630 149 HOH HOH . 
K 5 HOH BBB 31 1631 42 HOH HOH . 
K 5 HOH BBB 32 1632 153 HOH HOH . 
K 5 HOH BBB 33 1633 134 HOH HOH . 
K 5 HOH BBB 34 1634 126 HOH HOH . 
K 5 HOH BBB 35 1635 110 HOH HOH . 
K 5 HOH BBB 36 1636 9 HOH HOH . 
K 5 HOH BBB 37 1637 143 HOH HOH . 
K 5 HOH BBB 38 1638 79 HOH HOH . 
K 5 HOH BBB 39 1639 92 HOH HOH . 
K 5 HOH BBB 40 1640 7 HOH HOH . 
K 5 HOH BBB 41 1641 2 HOH HOH . 
K 5 HOH BBB 42 1642 97 HOH HOH . 
K 5 HOH BBB 43 1643 8 HOH HOH . 
K 5 HOH BBB 44 1644 128 HOH HOH . 
K 5 HOH BBB 45 1645 95 HOH HOH . 
K 5 HOH BBB 46 1646 34 HOH HOH . 
K 5 HOH BBB 47 1647 119 HOH HOH . 
K 5 HOH BBB 48 1648 88 HOH HOH . 
L 5 HOH CCC 1 1601 101 HOH HOH . 
L 5 HOH CCC 2 1602 3 HOH HOH . 
L 5 HOH CCC 3 1603 48 HOH HOH . 
L 5 HOH CCC 4 1604 140 HOH HOH . 
L 5 HOH CCC 5 1605 68 HOH HOH . 
L 5 HOH CCC 6 1606 12 HOH HOH . 
L 5 HOH CCC 7 1607 14 HOH HOH . 
L 5 HOH CCC 8 1608 52 HOH HOH . 
L 5 HOH CCC 9 1609 36 HOH HOH . 
L 5 HOH CCC 10 1610 25 HOH HOH . 
L 5 HOH CCC 11 1611 107 HOH HOH . 
L 5 HOH CCC 12 1612 96 HOH HOH . 
L 5 HOH CCC 13 1613 145 HOH HOH . 
L 5 HOH CCC 14 1614 54 HOH HOH . 
L 5 HOH CCC 15 1615 62 HOH HOH . 
L 5 HOH CCC 16 1616 6 HOH HOH . 
L 5 HOH CCC 17 1617 136 HOH HOH . 
L 5 HOH CCC 18 1618 121 HOH HOH . 
L 5 HOH CCC 19 1619 116 HOH HOH . 
L 5 HOH CCC 20 1620 41 HOH HOH . 
L 5 HOH CCC 21 1621 91 HOH HOH . 
L 5 HOH CCC 22 1622 74 HOH HOH . 
L 5 HOH CCC 23 1623 33 HOH HOH . 
L 5 HOH CCC 24 1624 37 HOH HOH . 
L 5 HOH CCC 25 1625 4 HOH HOH . 
L 5 HOH CCC 26 1626 44 HOH HOH . 
L 5 HOH CCC 27 1627 86 HOH HOH . 
L 5 HOH CCC 28 1628 22 HOH HOH . 
L 5 HOH CCC 29 1629 18 HOH HOH . 
L 5 HOH CCC 30 1630 23 HOH HOH . 
L 5 HOH CCC 31 1631 38 HOH HOH . 
L 5 HOH CCC 32 1632 65 HOH HOH . 
L 5 HOH CCC 33 1633 98 HOH HOH . 
L 5 HOH CCC 34 1634 49 HOH HOH . 
L 5 HOH CCC 35 1635 114 HOH HOH . 
M 5 HOH DDD 1 1501 57 HOH HOH . 
M 5 HOH DDD 2 1502 113 HOH HOH . 
M 5 HOH DDD 3 1503 94 HOH HOH . 
M 5 HOH DDD 4 1504 93 HOH HOH . 
M 5 HOH DDD 5 1505 5 HOH HOH . 
M 5 HOH DDD 6 1506 87 HOH HOH . 
M 5 HOH DDD 7 1507 50 HOH HOH . 
M 5 HOH DDD 8 1508 24 HOH HOH . 
M 5 HOH DDD 9 1509 29 HOH HOH . 
M 5 HOH DDD 10 1510 108 HOH HOH . 
M 5 HOH DDD 11 1511 45 HOH HOH . 
M 5 HOH DDD 12 1512 47 HOH HOH . 
M 5 HOH DDD 13 1513 129 HOH HOH . 
M 5 HOH DDD 14 1514 15 HOH HOH . 
M 5 HOH DDD 15 1515 46 HOH HOH . 
M 5 HOH DDD 16 1516 63 HOH HOH . 
M 5 HOH DDD 17 1517 39 HOH HOH . 
M 5 HOH DDD 18 1518 148 HOH HOH . 
M 5 HOH DDD 19 1519 102 HOH HOH . 
M 5 HOH DDD 20 1520 17 HOH HOH . 
M 5 HOH DDD 21 1521 40 HOH HOH . 
M 5 HOH DDD 22 1522 77 HOH HOH . 
M 5 HOH DDD 23 1523 103 HOH HOH . 
M 5 HOH DDD 24 1524 161 HOH HOH . 
M 5 HOH DDD 25 1525 120 HOH HOH . 
M 5 HOH DDD 26 1526 90 HOH HOH . 
M 5 HOH DDD 27 1527 58 HOH HOH . 
M 5 HOH DDD 28 1528 150 HOH HOH . 
M 5 HOH DDD 29 1529 75 HOH HOH . 
M 5 HOH DDD 30 1530 162 HOH HOH . 
N 5 HOH FFF 1 101 66 HOH HOH . 
N 5 HOH FFF 2 102 139 HOH HOH . 
N 5 HOH FFF 3 103 125 HOH HOH . 
N 5 HOH FFF 4 104 64 HOH HOH . 
N 5 HOH FFF 5 105 164 HOH HOH . 
N 5 HOH FFF 6 106 76 HOH HOH . 
N 5 HOH FFF 7 107 165 HOH HOH . 
O 5 HOH GGG 1 101 89 HOH HOH . 
O 5 HOH GGG 2 102 158 HOH HOH . 
O 5 HOH GGG 3 103 127 HOH HOH . 
O 5 HOH GGG 4 104 157 HOH HOH . 
O 5 HOH GGG 5 105 84 HOH HOH . 
O 5 HOH GGG 6 106 124 HOH HOH . 
O 5 HOH GGG 7 107 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 138.229 49.266 88.979 1 52.59 0 C1 EDO 1501 AAA 1 
HETATM 2 O O1 EDO . . . G 3 138.851 50.316 89.689 1 41.71 0 O1 EDO 1501 AAA 1 
HETATM 3 C C2 EDO . . . G 3 138.996 48.005 88.786 1 51.44 0 C2 EDO 1501 AAA 1 
HETATM 4 O O2 EDO . . . G 3 138.165 46.878 88.948 1 58.47 0 O2 EDO 1501 AAA 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#