data_7BBU
#
_model_server_result.job_id            BGNJegdM5v6vyh6FGfP9SA 
_model_server_result.datetime_utc      '2024-10-19 17:25:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bbu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1802}' 
#
_entry.id    7BBU 
#
_exptl.entry_id    7BBU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              365.429 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-(2,3-dihydro-1~{H}-inden-2-yl)-3-(piperidin-1-ylcarbonylamino)pyrazine-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7BBU 
_cell.length_a            87.09 
_cell.length_b            87.09 
_cell.length_c            108.6 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BBU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 451 A CYS 1448 1_555 J ZN ZN . A ZN 1809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc2 A SG CYS 456 A CYS 1453 1_555 J ZN ZN . A ZN 1809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc3 A SG CYS 498 A CYS 1495 1_555 J ZN ZN . A ZN 1809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc4 A SG CYS 500 A CYS 1497 1_555 J ZN ZN . A ZN 1809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
#
_chem_comp.formula           'C20 H23 N5 O2' 
_chem_comp.formula_weight    365.429 
_chem_comp.id                MU5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-(2,3-dihydro-1~{H}-inden-2-yl)-3-(piperidin-1-ylcarbonylamino)pyrazine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C16 MU5 sing 246 n n 
C15 N4 MU5 sing 247 n n 
C16 C17 MU5 sing 248 n n 
N4 C19 MU5 sing 249 n n 
N4 C MU5 sing 250 n n 
C17 C18 MU5 sing 251 n n 
C19 C18 MU5 sing 252 n n 
C O MU5 doub 253 n n 
C N MU5 sing 254 n n 
C7 C8 MU5 sing 255 n n 
C7 C6 MU5 sing 256 n n 
O1 C5 MU5 doub 257 n n 
C14 C8 MU5 doub 258 n y 
C14 C13 MU5 sing 259 n y 
N C1 MU5 sing 260 n n 
C8 C9 MU5 sing 261 n y 
C5 N3 MU5 sing 262 n n 
C5 C4 MU5 sing 263 n n 
C13 C12 MU5 doub 264 n y 
C6 N3 MU5 sing 265 n n 
C6 C10 MU5 sing 266 n n 
C1 C4 MU5 doub 267 n y 
C1 N1 MU5 sing 268 n y 
C4 N2 MU5 sing 269 n y 
C9 C10 MU5 sing 270 n n 
C9 C11 MU5 doub 271 n y 
N1 C2 MU5 doub 272 n y 
C12 C11 MU5 sing 273 n y 
N2 C3 MU5 doub 274 n y 
C2 C3 MU5 sing 275 n y 
N3 H1 MU5 sing 276 n n 
C6 H2 MU5 sing 277 n n 
C7 H3 MU5 sing 278 n n 
C7 H4 MU5 sing 279 n n 
C10 H5 MU5 sing 280 n n 
C10 H6 MU5 sing 281 n n 
C13 H7 MU5 sing 282 n n 
C15 H8 MU5 sing 283 n n 
C15 H9 MU5 sing 284 n n 
C17 H10 MU5 sing 285 n n 
C17 H11 MU5 sing 286 n n 
N H12 MU5 sing 287 n n 
C11 H13 MU5 sing 288 n n 
C12 H14 MU5 sing 289 n n 
C14 H15 MU5 sing 290 n n 
C16 H16 MU5 sing 291 n n 
C16 H17 MU5 sing 292 n n 
C18 H18 MU5 sing 293 n n 
C18 H19 MU5 sing 294 n n 
C19 H20 MU5 sing 295 n n 
C19 H21 MU5 sing 296 n n 
C2 H22 MU5 sing 297 n n 
C3 H23 MU5 sing 298 n n 
#
_atom_sites.entry_id                     7BBU 
_atom_sites.fract_transf_matrix[1][1]    0.011482 
_atom_sites.fract_transf_matrix[1][2]    0.006629 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013259 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009208 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PRO A 1 1801 1801 PRO PRO . 
C 3 MU5 A 1 1802 1901 MU5 LIG . 
D 4 EDO A 1 1803 2001 EDO EDO . 
E 4 EDO A 1 1804 2601 EDO EDO . 
F 4 EDO A 1 1805 2701 EDO EDO . 
G 4 EDO A 1 1806 3001 EDO EDO . 
H 5 NO3 A 1 1807 3201 NO3 NO3 . 
I 4 EDO A 1 1808 3301 EDO EDO . 
J 6 ZN A 1 1809 1 ZN ZN . 
K 4 EDO A 1 1810 8 EDO EDO . 
L 4 EDO A 1 1811 10 EDO EDO . 
M 4 EDO A 1 1812 11 EDO EDO . 
N 4 EDO A 1 1813 12 EDO EDO . 
O 4 EDO A 1 1814 13 EDO EDO . 
P 7 CL A 1 1815 1 CL CL . 
Q 8 HOH A 1 1901 358 HOH HOH . 
Q 8 HOH A 2 1902 363 HOH HOH . 
Q 8 HOH A 3 1903 360 HOH HOH . 
Q 8 HOH A 4 1904 361 HOH HOH . 
Q 8 HOH A 5 1905 339 HOH HOH . 
Q 8 HOH A 6 1906 277 HOH HOH . 
Q 8 HOH A 7 1907 298 HOH HOH . 
Q 8 HOH A 8 1908 52 HOH HOH . 
Q 8 HOH A 9 1909 359 HOH HOH . 
Q 8 HOH A 10 1910 362 HOH HOH . 
Q 8 HOH A 11 1911 206 HOH HOH . 
Q 8 HOH A 12 1912 257 HOH HOH . 
Q 8 HOH A 13 1913 196 HOH HOH . 
Q 8 HOH A 14 1914 366 HOH HOH . 
Q 8 HOH A 15 1915 2 HOH HOH . 
Q 8 HOH A 16 1916 327 HOH HOH . 
Q 8 HOH A 17 1917 279 HOH HOH . 
Q 8 HOH A 18 1918 147 HOH HOH . 
Q 8 HOH A 19 1919 9 HOH HOH . 
Q 8 HOH A 20 1920 172 HOH HOH . 
Q 8 HOH A 21 1921 10 HOH HOH . 
Q 8 HOH A 22 1922 176 HOH HOH . 
Q 8 HOH A 23 1923 203 HOH HOH . 
Q 8 HOH A 24 1924 3 HOH HOH . 
Q 8 HOH A 25 1925 193 HOH HOH . 
Q 8 HOH A 26 1926 237 HOH HOH . 
Q 8 HOH A 27 1927 284 HOH HOH . 
Q 8 HOH A 28 1928 364 HOH HOH . 
Q 8 HOH A 29 1929 276 HOH HOH . 
Q 8 HOH A 30 1930 349 HOH HOH . 
Q 8 HOH A 31 1931 87 HOH HOH . 
Q 8 HOH A 32 1932 262 HOH HOH . 
Q 8 HOH A 33 1933 71 HOH HOH . 
Q 8 HOH A 34 1934 159 HOH HOH . 
Q 8 HOH A 35 1935 338 HOH HOH . 
Q 8 HOH A 36 1936 44 HOH HOH . 
Q 8 HOH A 37 1937 269 HOH HOH . 
Q 8 HOH A 38 1938 278 HOH HOH . 
Q 8 HOH A 39 1939 253 HOH HOH . 
Q 8 HOH A 40 1940 38 HOH HOH . 
Q 8 HOH A 41 1941 20 HOH HOH . 
Q 8 HOH A 42 1942 282 HOH HOH . 
Q 8 HOH A 43 1943 175 HOH HOH . 
Q 8 HOH A 44 1944 67 HOH HOH . 
Q 8 HOH A 45 1945 325 HOH HOH . 
Q 8 HOH A 46 1946 25 HOH HOH . 
Q 8 HOH A 47 1947 16 HOH HOH . 
Q 8 HOH A 48 1948 356 HOH HOH . 
Q 8 HOH A 49 1949 182 HOH HOH . 
Q 8 HOH A 50 1950 21 HOH HOH . 
Q 8 HOH A 51 1951 256 HOH HOH . 
Q 8 HOH A 52 1952 258 HOH HOH . 
Q 8 HOH A 53 1953 183 HOH HOH . 
Q 8 HOH A 54 1954 238 HOH HOH . 
Q 8 HOH A 55 1955 23 HOH HOH . 
Q 8 HOH A 56 1956 158 HOH HOH . 
Q 8 HOH A 57 1957 328 HOH HOH . 
Q 8 HOH A 58 1958 139 HOH HOH . 
Q 8 HOH A 59 1959 329 HOH HOH . 
Q 8 HOH A 60 1960 27 HOH HOH . 
Q 8 HOH A 61 1961 35 HOH HOH . 
Q 8 HOH A 62 1962 324 HOH HOH . 
Q 8 HOH A 63 1963 177 HOH HOH . 
Q 8 HOH A 64 1964 352 HOH HOH . 
Q 8 HOH A 65 1965 50 HOH HOH . 
Q 8 HOH A 66 1966 26 HOH HOH . 
Q 8 HOH A 67 1967 301 HOH HOH . 
Q 8 HOH A 68 1968 297 HOH HOH . 
Q 8 HOH A 69 1969 164 HOH HOH . 
Q 8 HOH A 70 1970 296 HOH HOH . 
Q 8 HOH A 71 1971 265 HOH HOH . 
Q 8 HOH A 72 1972 1 HOH HOH . 
Q 8 HOH A 73 1973 43 HOH HOH . 
Q 8 HOH A 74 1974 350 HOH HOH . 
Q 8 HOH A 75 1975 195 HOH HOH . 
Q 8 HOH A 76 1976 303 HOH HOH . 
Q 8 HOH A 77 1977 6 HOH HOH . 
Q 8 HOH A 78 1978 157 HOH HOH . 
Q 8 HOH A 79 1979 212 HOH HOH . 
Q 8 HOH A 80 1980 249 HOH HOH . 
Q 8 HOH A 81 1981 199 HOH HOH . 
Q 8 HOH A 82 1982 55 HOH HOH . 
Q 8 HOH A 83 1983 42 HOH HOH . 
Q 8 HOH A 84 1984 98 HOH HOH . 
Q 8 HOH A 85 1985 200 HOH HOH . 
Q 8 HOH A 86 1986 295 HOH HOH . 
Q 8 HOH A 87 1987 48 HOH HOH . 
Q 8 HOH A 88 1988 346 HOH HOH . 
Q 8 HOH A 89 1989 197 HOH HOH . 
Q 8 HOH A 90 1990 205 HOH HOH . 
Q 8 HOH A 91 1991 216 HOH HOH . 
Q 8 HOH A 92 1992 142 HOH HOH . 
Q 8 HOH A 93 1993 228 HOH HOH . 
Q 8 HOH A 94 1994 365 HOH HOH . 
Q 8 HOH A 95 1995 345 HOH HOH . 
Q 8 HOH A 96 1996 37 HOH HOH . 
Q 8 HOH A 97 1997 300 HOH HOH . 
Q 8 HOH A 98 1998 348 HOH HOH . 
Q 8 HOH A 99 1999 165 HOH HOH . 
Q 8 HOH A 100 2000 255 HOH HOH . 
Q 8 HOH A 101 2001 115 HOH HOH . 
Q 8 HOH A 102 2002 148 HOH HOH . 
Q 8 HOH A 103 2003 333 HOH HOH . 
Q 8 HOH A 104 2004 152 HOH HOH . 
Q 8 HOH A 105 2005 322 HOH HOH . 
Q 8 HOH A 106 2006 314 HOH HOH . 
Q 8 HOH A 107 2007 347 HOH HOH . 
Q 8 HOH A 108 2008 28 HOH HOH . 
Q 8 HOH A 109 2009 226 HOH HOH . 
Q 8 HOH A 110 2010 232 HOH HOH . 
Q 8 HOH A 111 2011 281 HOH HOH . 
Q 8 HOH A 112 2012 344 HOH HOH . 
Q 8 HOH A 113 2013 316 HOH HOH . 
Q 8 HOH A 114 2014 313 HOH HOH . 
Q 8 HOH A 115 2015 63 HOH HOH . 
Q 8 HOH A 116 2016 357 HOH HOH . 
Q 8 HOH A 117 2017 45 HOH HOH . 
Q 8 HOH A 118 2018 215 HOH HOH . 
Q 8 HOH A 119 2019 289 HOH HOH . 
Q 8 HOH A 120 2020 189 HOH HOH . 
Q 8 HOH A 121 2021 309 HOH HOH . 
Q 8 HOH A 122 2022 68 HOH HOH . 
Q 8 HOH A 123 2023 184 HOH HOH . 
Q 8 HOH A 124 2024 270 HOH HOH . 
Q 8 HOH A 125 2025 202 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MU5 . . . C 3 13.78 20.516 -14.397 1 30.84 ? N1 MU5 1802 A 1 
HETATM 2 N N3 MU5 . . . C 3 11.54 16.321 -14.974 1 35.64 ? N3 MU5 1802 A 1 
HETATM 3 C C4 MU5 . . . C 3 12.7 18.42 -14.832 1 32.81 ? C4 MU5 1802 A 1 
HETATM 4 C C5 MU5 . . . C 3 11.534 17.614 -15.326 1 34.23 ? C5 MU5 1802 A 1 
HETATM 5 C C6 MU5 . . . C 3 10.464 15.403 -15.344 1 36.48 ? C6 MU5 1802 A 1 
HETATM 6 C C7 MU5 . . . C 3 10.451 14.16 -14.452 1 35.99 ? C7 MU5 1802 A 1 
HETATM 7 C C8 MU5 . . . C 3 11.265 13.173 -15.242 1 35.82 ? C8 MU5 1802 A 1 
HETATM 8 C C10 MU5 . . . C 3 10.627 14.875 -16.771 1 34.76 ? C10 MU5 1802 A 1 
HETATM 9 C C13 MU5 . . . C 3 12.604 11.24 -15.741 1 35.23 ? C13 MU5 1802 A 1 
HETATM 10 C C15 MU5 . . . C 3 9.316 21.797 -15.973 1 32.63 ? C15 MU5 1802 A 1 
HETATM 11 C C17 MU5 . . . C 3 8.777 24.131 -15.277 1 33.18 ? C17 MU5 1802 A 1 
HETATM 12 N N MU5 . . . C 3 11.672 20.529 -15.436 1 33.05 ? N MU5 1802 A 1 
HETATM 13 C C MU5 . . . C 3 11.765 21.753 -16.028 1 33.57 ? C MU5 1802 A 1 
HETATM 14 O O MU5 . . . C 3 12.816 22.371 -16.134 1 32.69 ? O MU5 1802 A 1 
HETATM 15 C C1 MU5 . . . C 3 12.739 19.818 -14.88 1 31.79 ? C1 MU5 1802 A 1 
HETATM 16 C C11 MU5 . . . C 3 12.079 12.81 -17.475 1 35.08 ? C11 MU5 1802 A 1 
HETATM 17 C C12 MU5 . . . C 3 12.7 11.644 -17.059 1 34.38 ? C12 MU5 1802 A 1 
HETATM 18 C C14 MU5 . . . C 3 11.888 12 -14.831 1 35.84 ? C14 MU5 1802 A 1 
HETATM 19 C C16 MU5 . . . C 3 8.859 22.684 -14.835 1 33.18 ? C16 MU5 1802 A 1 
HETATM 20 C C18 MU5 . . . C 3 10.093 24.581 -15.882 1 32.88 ? C18 MU5 1802 A 1 
HETATM 21 C C19 MU5 . . . C 3 10.527 23.648 -16.993 1 32.9 ? C19 MU5 1802 A 1 
HETATM 22 C C2 MU5 . . . C 3 14.779 19.792 -13.873 1 30.83 ? C2 MU5 1802 A 1 
HETATM 23 C C3 MU5 . . . C 3 14.744 18.411 -13.829 1 31.95 ? C3 MU5 1802 A 1 
HETATM 24 C C9 MU5 . . . C 3 11.362 13.578 -16.567 1 35.42 ? C9 MU5 1802 A 1 
HETATM 25 N N2 MU5 . . . C 3 13.707 17.706 -14.308 1 31.99 ? N2 MU5 1802 A 1 
HETATM 26 N N4 MU5 . . . C 3 10.599 22.267 -16.505 1 33.36 ? N4 MU5 1802 A 1 
HETATM 27 O O1 MU5 . . . C 3 10.639 18.119 -15.999 1 34.77 ? O1 MU5 1802 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           27 
#