data_7BC2 # _model_server_result.job_id mU4OncMXD81F9ZjgzUehCQ _model_server_result.datetime_utc '2025-01-10 23:12:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1901}' # _entry.id 7BC2 # _exptl.entry_id 7BC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.428 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1-methyl-1H-1,2,3-triazol-5-yl)-5-((2-(pyridin-4-yl)pyrrolidin-1-yl)methyl)-1H-benzo[d]imidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BC2 _cell.length_a 94.603 _cell.length_b 94.603 _cell.length_c 32.744 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomer _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H21 N7' _chem_comp.formula_weight 359.428 _chem_comp.id T8Z _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1-methyl-1H-1,2,3-triazol-5-yl)-5-((2-(pyridin-4-yl)pyrrolidin-1-yl)methyl)-1H-benzo[d]imidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-(3-methyl-1,2,3-triazol-4-yl)-6-[[(2~{S})-2-pyridin-4-ylpyrrolidin-1-yl]methyl]-1~{H}-benzimidazole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N21 C20 T8Z doub 290 n y N21 C22 T8Z sing 291 n y C20 C19 T8Z sing 292 n y C22 C23 T8Z doub 293 n y C19 C18 T8Z doub 294 n y C16 C15 T8Z sing 295 n n C16 C17 T8Z sing 296 n n C15 C14 T8Z sing 297 n n C23 C18 T8Z sing 298 n y C18 C17 T8Z sing 299 n n C17 N13 T8Z sing 300 n n C01 N02 T8Z sing 301 n n C14 N13 T8Z sing 302 n n N02 N03 T8Z sing 303 n y N02 C06 T8Z sing 304 n y N03 N04 T8Z doub 305 n y N13 C12 T8Z sing 306 n n C06 C07 T8Z sing 307 n n C06 C05 T8Z doub 308 n y N08 C07 T8Z sing 309 n y N08 C09 T8Z sing 310 n y N04 C05 T8Z sing 311 n y C07 N27 T8Z doub 312 n y C10 C09 T8Z doub 313 n y C10 C11 T8Z sing 314 n y C09 C26 T8Z sing 315 n y N27 C26 T8Z sing 316 n y C12 C11 T8Z sing 317 n n C11 C24 T8Z doub 318 n y C26 C25 T8Z doub 319 n y C24 C25 T8Z sing 320 n y C10 H1 T8Z sing 321 n n C12 H2 T8Z sing 322 n n C12 H3 T8Z sing 323 n n C14 H5 T8Z sing 324 n n C14 H6 T8Z sing 325 n n C15 H7 T8Z sing 326 n n C15 H8 T8Z sing 327 n n C16 H9 T8Z sing 328 n n C16 H10 T8Z sing 329 n n C17 H11 T8Z sing 330 n n C19 H12 T8Z sing 331 n n C20 H13 T8Z sing 332 n n C22 H14 T8Z sing 333 n n C23 H15 T8Z sing 334 n n C24 H16 T8Z sing 335 n n C25 H17 T8Z sing 336 n n C01 H18 T8Z sing 337 n n C01 H19 T8Z sing 338 n n C01 H20 T8Z sing 339 n n C05 H21 T8Z sing 340 n n N08 H22 T8Z sing 341 n n # _atom_sites.entry_id 7BC2 _atom_sites.fract_transf_matrix[1][1] 0.01057 _atom_sites.fract_transf_matrix[1][2] 0.006103 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T8Z A 1 1901 1901 T8Z 404 . C 3 HOH A 1 2001 26 HOH HOH . C 3 HOH A 2 2002 58 HOH HOH . C 3 HOH A 3 2003 43 HOH HOH . C 3 HOH A 4 2004 4 HOH HOH . C 3 HOH A 5 2005 62 HOH HOH . C 3 HOH A 6 2006 45 HOH HOH . C 3 HOH A 7 2007 17 HOH HOH . C 3 HOH A 8 2008 24 HOH HOH . C 3 HOH A 9 2009 16 HOH HOH . C 3 HOH A 10 2010 76 HOH HOH . C 3 HOH A 11 2011 14 HOH HOH . C 3 HOH A 12 2012 5 HOH HOH . C 3 HOH A 13 2013 42 HOH HOH . C 3 HOH A 14 2014 36 HOH HOH . C 3 HOH A 15 2015 28 HOH HOH . C 3 HOH A 16 2016 59 HOH HOH . C 3 HOH A 17 2017 20 HOH HOH . C 3 HOH A 18 2018 40 HOH HOH . C 3 HOH A 19 2019 50 HOH HOH . C 3 HOH A 20 2020 63 HOH HOH . C 3 HOH A 21 2021 77 HOH HOH . C 3 HOH A 22 2022 21 HOH HOH . C 3 HOH A 23 2023 39 HOH HOH . C 3 HOH A 24 2024 11 HOH HOH . C 3 HOH A 25 2025 70 HOH HOH . C 3 HOH A 26 2026 33 HOH HOH . C 3 HOH A 27 2027 49 HOH HOH . C 3 HOH A 28 2028 46 HOH HOH . C 3 HOH A 29 2029 54 HOH HOH . C 3 HOH A 30 2030 6 HOH HOH . C 3 HOH A 31 2031 67 HOH HOH . C 3 HOH A 32 2032 12 HOH HOH . C 3 HOH A 33 2033 8 HOH HOH . C 3 HOH A 34 2034 10 HOH HOH . C 3 HOH A 35 2035 51 HOH HOH . C 3 HOH A 36 2036 1 HOH HOH . C 3 HOH A 37 2037 66 HOH HOH . C 3 HOH A 38 2038 9 HOH HOH . C 3 HOH A 39 2039 35 HOH HOH . C 3 HOH A 40 2040 7 HOH HOH . C 3 HOH A 41 2041 73 HOH HOH . C 3 HOH A 42 2042 23 HOH HOH . C 3 HOH A 43 2043 22 HOH HOH . C 3 HOH A 44 2044 13 HOH HOH . C 3 HOH A 45 2045 48 HOH HOH . C 3 HOH A 46 2046 3 HOH HOH . C 3 HOH A 47 2047 47 HOH HOH . C 3 HOH A 48 2048 19 HOH HOH . C 3 HOH A 49 2049 41 HOH HOH . C 3 HOH A 50 2050 37 HOH HOH . C 3 HOH A 51 2051 31 HOH HOH . C 3 HOH A 52 2052 29 HOH HOH . C 3 HOH A 53 2053 64 HOH HOH . C 3 HOH A 54 2054 27 HOH HOH . C 3 HOH A 55 2055 15 HOH HOH . C 3 HOH A 56 2056 32 HOH HOH . C 3 HOH A 57 2057 2 HOH HOH . C 3 HOH A 58 2058 57 HOH HOH . C 3 HOH A 59 2059 53 HOH HOH . C 3 HOH A 60 2060 18 HOH HOH . C 3 HOH A 61 2061 55 HOH HOH . C 3 HOH A 62 2062 25 HOH HOH . C 3 HOH A 63 2063 75 HOH HOH . C 3 HOH A 64 2064 78 HOH HOH . C 3 HOH A 65 2065 71 HOH HOH . C 3 HOH A 66 2066 56 HOH HOH . C 3 HOH A 67 2067 44 HOH HOH . C 3 HOH A 68 2068 61 HOH HOH . C 3 HOH A 69 2069 30 HOH HOH . C 3 HOH A 70 2070 79 HOH HOH . C 3 HOH A 71 2071 74 HOH HOH . C 3 HOH A 72 2072 65 HOH HOH . C 3 HOH A 73 2073 80 HOH HOH . C 3 HOH A 74 2074 38 HOH HOH . C 3 HOH A 75 2075 34 HOH HOH . C 3 HOH A 76 2076 68 HOH HOH . C 3 HOH A 77 2077 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 T8Z . . . B 2 -40.112 41.36 -3.989 0.92 37.82 ? C10 T8Z 1901 A 1 HETATM 2 C C11 T8Z . . . B 2 -41.326 40.731 -3.585 0.92 46.89 ? C11 T8Z 1901 A 1 HETATM 3 C C12 T8Z . . . B 2 -42.654 41.509 -3.604 0.92 64.68 ? C12 T8Z 1901 A 1 HETATM 4 N N13 T8Z . . . B 2 -43.261 41.526 -4.672 0.92 72.52 ? N13 T8Z 1901 A 1 HETATM 5 C C14 T8Z . . . B 2 -43.161 42.554 -5.388 0.92 69.44 ? C14 T8Z 1901 A 1 HETATM 6 C C15 T8Z . . . B 2 -44.061 42.2 -6.623 0.92 62.12 ? C15 T8Z 1901 A 1 HETATM 7 C C16 T8Z . . . B 2 -44.167 40.725 -6.646 0.92 65 ? C16 T8Z 1901 A 1 HETATM 8 C C17 T8Z . . . B 2 -43.42 40.26 -5.646 0.92 69.4 ? C17 T8Z 1901 A 1 HETATM 9 C C18 T8Z . . . B 2 -42.251 39.531 -6.397 0.92 61.52 ? C18 T8Z 1901 A 1 HETATM 10 C C19 T8Z . . . B 2 -41.155 40.2 -6.888 0.92 50.86 ? C19 T8Z 1901 A 1 HETATM 11 C C20 T8Z . . . B 2 -40.137 39.49 -7.537 0.92 42.8 ? C20 T8Z 1901 A 1 HETATM 12 N N21 T8Z . . . B 2 -40.216 38.163 -7.695 0.92 45.66 ? N21 T8Z 1901 A 1 HETATM 13 C C22 T8Z . . . B 2 -41.242 37.478 -7.253 0.92 55.18 ? C22 T8Z 1901 A 1 HETATM 14 C C23 T8Z . . . B 2 -42.289 38.126 -6.591 0.92 58.72 ? C23 T8Z 1901 A 1 HETATM 15 C C24 T8Z . . . B 2 -41.312 39.388 -3.153 0.92 40.01 ? C24 T8Z 1901 A 1 HETATM 16 C C25 T8Z . . . B 2 -40.112 38.649 -3.142 0.92 33.38 ? C25 T8Z 1901 A 1 HETATM 17 C C01 T8Z . . . B 2 -34.887 41.815 -5.581 0.92 32.95 ? C01 T8Z 1901 A 1 HETATM 18 C C05 T8Z . . . B 2 -34.726 38.612 -3.878 0.92 29 ? C05 T8Z 1901 A 1 HETATM 19 C C06 T8Z . . . B 2 -35.44 39.704 -4.314 0.92 28.75 ? C06 T8Z 1901 A 1 HETATM 20 C C07 T8Z . . . B 2 -36.832 39.842 -4.115 0.92 29.65 ? C07 T8Z 1901 A 1 HETATM 21 C C09 T8Z . . . B 2 -38.878 40.605 -3.974 0.92 30.88 ? C09 T8Z 1901 A 1 HETATM 22 C C26 T8Z . . . B 2 -38.879 39.292 -3.567 0.92 33.59 ? C26 T8Z 1901 A 1 HETATM 23 N N02 T8Z . . . B 2 -34.592 40.515 -4.94 0.92 31.98 ? N02 T8Z 1901 A 1 HETATM 24 N N03 T8Z . . . B 2 -33.349 39.946 -4.88 0.92 28.75 ? N03 T8Z 1901 A 1 HETATM 25 N N04 T8Z . . . B 2 -33.449 38.768 -4.225 0.92 34.78 ? N04 T8Z 1901 A 1 HETATM 26 N N08 T8Z . . . B 2 -37.583 40.925 -4.301 0.92 28.44 ? N08 T8Z 1901 A 1 HETATM 27 N N27 T8Z . . . B 2 -37.594 38.843 -3.661 0.92 29.76 ? N27 T8Z 1901 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #