data_7BCD # _model_server_result.job_id 8wQybRIegVq_xrHMxAxJ9w _model_server_result.datetime_utc '2024-11-23 02:55:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bcd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 7BCD # _exptl.entry_id 7BCD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.309 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(morpholin-4-ium-4-ylmethyl)naphthalen-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BCD _cell.length_a 60.201 _cell.length_b 73.072 _cell.length_c 78.659 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BCD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C15 H18 N O2 1' _chem_comp.formula_weight 244.309 _chem_comp.id T9Z _chem_comp.mon_nstd_flag . _chem_comp.name 2-(morpholin-4-ium-4-ylmethyl)naphthalen-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 O16 T9Z sing 333 n n C17 C18 T9Z sing 334 n n O16 C15 T9Z sing 335 n n C18 N13 T9Z sing 336 n n C15 C14 T9Z sing 337 n n N13 C14 T9Z sing 338 n n N13 C12 T9Z sing 339 n n C12 C09 T9Z sing 340 n n C08 C09 T9Z doub 341 n y C08 C07 T9Z sing 342 n y C09 C10 T9Z sing 343 n y C07 C05 T9Z doub 344 n y C10 O11 T9Z sing 345 n n C10 C04 T9Z doub 346 n y C05 C04 T9Z sing 347 n y C05 C06 T9Z sing 348 n y C04 C03 T9Z sing 349 n y C06 C01 T9Z doub 350 n y C03 C02 T9Z doub 351 n y C01 C02 T9Z sing 352 n y C15 H1 T9Z sing 353 n n C15 H2 T9Z sing 354 n n C17 H3 T9Z sing 355 n n C17 H4 T9Z sing 356 n n C01 H5 T9Z sing 357 n n C02 H6 T9Z sing 358 n n C03 H7 T9Z sing 359 n n C06 H8 T9Z sing 360 n n C07 H9 T9Z sing 361 n n C08 H10 T9Z sing 362 n n C12 H11 T9Z sing 363 n n C12 H12 T9Z sing 364 n n C14 H13 T9Z sing 365 n n C14 H14 T9Z sing 366 n n C18 H15 T9Z sing 367 n n C18 H16 T9Z sing 368 n n N13 H17 T9Z sing 369 n n O11 H18 T9Z sing 370 n n # _atom_sites.entry_id 7BCD _atom_sites.fract_transf_matrix[1][1] 0.016611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 DMS A 1 503 1501 DMS DMS . E 2 SO4 A 1 504 8 SO4 SO4 . F 2 SO4 A 1 505 10 SO4 SO4 . G 2 SO4 A 1 506 11 SO4 SO4 . H 5 T9Z A 1 507 1 T9Z LIG . I 6 HOH A 1 601 40 HOH HOH . I 6 HOH A 2 602 22 HOH HOH . I 6 HOH A 3 603 1086 HOH HOH . I 6 HOH A 4 604 25 HOH HOH . I 6 HOH A 5 605 1046 HOH HOH . I 6 HOH A 6 606 1033 HOH HOH . I 6 HOH A 7 607 32 HOH HOH . I 6 HOH A 8 608 1196 HOH HOH . I 6 HOH A 9 609 1031 HOH HOH . I 6 HOH A 10 610 1073 HOH HOH . I 6 HOH A 11 611 1027 HOH HOH . I 6 HOH A 12 612 1118 HOH HOH . I 6 HOH A 13 613 1016 HOH HOH . I 6 HOH A 14 614 1045 HOH HOH . I 6 HOH A 15 615 1082 HOH HOH . I 6 HOH A 16 616 1047 HOH HOH . I 6 HOH A 17 617 1004 HOH HOH . I 6 HOH A 18 618 1148 HOH HOH . I 6 HOH A 19 619 1050 HOH HOH . I 6 HOH A 20 620 1048 HOH HOH . I 6 HOH A 21 621 1003 HOH HOH . I 6 HOH A 22 622 1197 HOH HOH . I 6 HOH A 23 623 36 HOH HOH . I 6 HOH A 24 624 1040 HOH HOH . I 6 HOH A 25 625 1059 HOH HOH . I 6 HOH A 26 626 1001 HOH HOH . I 6 HOH A 27 627 1149 HOH HOH . I 6 HOH A 28 628 1087 HOH HOH . I 6 HOH A 29 629 1070 HOH HOH . I 6 HOH A 30 630 1098 HOH HOH . I 6 HOH A 31 631 1133 HOH HOH . I 6 HOH A 32 632 1008 HOH HOH . I 6 HOH A 33 633 1013 HOH HOH . I 6 HOH A 34 634 1123 HOH HOH . I 6 HOH A 35 635 1051 HOH HOH . I 6 HOH A 36 636 11 HOH HOH . I 6 HOH A 37 637 1058 HOH HOH . I 6 HOH A 38 638 1029 HOH HOH . I 6 HOH A 39 639 1012 HOH HOH . I 6 HOH A 40 640 1036 HOH HOH . I 6 HOH A 41 641 1064 HOH HOH . I 6 HOH A 42 642 7 HOH HOH . I 6 HOH A 43 643 1019 HOH HOH . I 6 HOH A 44 644 1114 HOH HOH . I 6 HOH A 45 645 1092 HOH HOH . I 6 HOH A 46 646 1068 HOH HOH . I 6 HOH A 47 647 12 HOH HOH . I 6 HOH A 48 648 1091 HOH HOH . I 6 HOH A 49 649 1054 HOH HOH . I 6 HOH A 50 650 1063 HOH HOH . I 6 HOH A 51 651 1190 HOH HOH . I 6 HOH A 52 652 1007 HOH HOH . I 6 HOH A 53 653 1145 HOH HOH . I 6 HOH A 54 654 1109 HOH HOH . I 6 HOH A 55 655 1078 HOH HOH . I 6 HOH A 56 656 1106 HOH HOH . I 6 HOH A 57 657 1043 HOH HOH . I 6 HOH A 58 658 1074 HOH HOH . I 6 HOH A 59 659 1041 HOH HOH . I 6 HOH A 60 660 1065 HOH HOH . I 6 HOH A 61 661 1093 HOH HOH . I 6 HOH A 62 662 1005 HOH HOH . I 6 HOH A 63 663 1002 HOH HOH . I 6 HOH A 64 664 1077 HOH HOH . I 6 HOH A 65 665 4 HOH HOH . I 6 HOH A 66 666 1039 HOH HOH . I 6 HOH A 67 667 1150 HOH HOH . I 6 HOH A 68 668 1015 HOH HOH . I 6 HOH A 69 669 1014 HOH HOH . I 6 HOH A 70 670 49 HOH HOH . I 6 HOH A 71 671 1020 HOH HOH . I 6 HOH A 72 672 1022 HOH HOH . I 6 HOH A 73 673 1062 HOH HOH . I 6 HOH A 74 674 13 HOH HOH . I 6 HOH A 75 675 1017 HOH HOH . I 6 HOH A 76 676 1011 HOH HOH . I 6 HOH A 77 677 1037 HOH HOH . I 6 HOH A 78 678 34 HOH HOH . I 6 HOH A 79 679 1057 HOH HOH . I 6 HOH A 80 680 1038 HOH HOH . I 6 HOH A 81 681 1035 HOH HOH . I 6 HOH A 82 682 30 HOH HOH . I 6 HOH A 83 683 26 HOH HOH . I 6 HOH A 84 684 1026 HOH HOH . I 6 HOH A 85 685 1006 HOH HOH . I 6 HOH A 86 686 1049 HOH HOH . I 6 HOH A 87 687 1030 HOH HOH . I 6 HOH A 88 688 1079 HOH HOH . I 6 HOH A 89 689 1120 HOH HOH . I 6 HOH A 90 690 1081 HOH HOH . I 6 HOH A 91 691 1142 HOH HOH . I 6 HOH A 92 692 1023 HOH HOH . I 6 HOH A 93 693 1042 HOH HOH . I 6 HOH A 94 694 42 HOH HOH . I 6 HOH A 95 695 1155 HOH HOH . I 6 HOH A 96 696 1153 HOH HOH . I 6 HOH A 97 697 1112 HOH HOH . I 6 HOH A 98 698 1152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 T9Z . . . H 5 -0.714 -9.151 8.058 1 24.26 ? C10 T9Z 507 A 1 HETATM 2 C C15 T9Z . . . H 5 -0.725 -4.207 6.033 1 24.9 ? C15 T9Z 507 A 1 HETATM 3 C C17 T9Z . . . H 5 -1.423 -5.983 4.539 1 24.85 ? C17 T9Z 507 A 1 HETATM 4 C C01 T9Z . . . H 5 -1.707 -13.18 9.034 1 22.11 ? C01 T9Z 507 A 1 HETATM 5 C C02 T9Z . . . H 5 -2.627 -12.15 9.328 1 27.73 ? C02 T9Z 507 A 1 HETATM 6 C C03 T9Z . . . H 5 -2.29 -10.81 9.006 1 29.85 ? C03 T9Z 507 A 1 HETATM 7 C C04 T9Z . . . H 5 -1.056 -10.511 8.391 1 24.69 ? C04 T9Z 507 A 1 HETATM 8 C C05 T9Z . . . H 5 -0.165 -11.521 8.091 1 22.21 ? C05 T9Z 507 A 1 HETATM 9 C C06 T9Z . . . H 5 -0.504 -12.881 8.424 1 22.03 ? C06 T9Z 507 A 1 HETATM 10 C C07 T9Z . . . H 5 1.089 -11.23 7.455 1 23.43 ? C07 T9Z 507 A 1 HETATM 11 C C08 T9Z . . . H 5 1.422 -9.902 7.137 1 21.59 ? C08 T9Z 507 A 1 HETATM 12 C C09 T9Z . . . H 5 0.504 -8.867 7.452 1 20.63 ? C09 T9Z 507 A 1 HETATM 13 C C12 T9Z . . . H 5 0.899 -7.378 7.101 1 26.35 ? C12 T9Z 507 A 1 HETATM 14 C C14 T9Z . . . H 5 0.182 -5.2 6.743 1 25.24 ? C14 T9Z 507 A 1 HETATM 15 C C18 T9Z . . . H 5 -0.459 -6.92 5.247 1 21.51 ? C18 T9Z 507 A 1 HETATM 16 N N13 T9Z . . . H 5 -0.239 -6.546 6.622 1 25.86 ? N13 T9Z 507 A 1 HETATM 17 O O11 T9Z . . . H 5 -1.602 -8.122 8.35 1 24.8 ? O11 T9Z 507 A 1 HETATM 18 O O16 T9Z . . . H 5 -1.088 -4.609 4.701 1 25.62 ? O16 T9Z 507 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #