data_7BCF # _model_server_result.job_id XrBN1SM-q2FeOwzII9vR0g _model_server_result.datetime_utc '2024-11-13 05:02:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bcf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 7BCF # _exptl.entry_id 7BCF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.211 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-(2,5-Dioxopyrrolidin-1-yl)phenoxy]acetate _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BCF _cell.length_a 60.714 _cell.length_b 72.444 _cell.length_c 79.564 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C12 H10 N O5 -1' _chem_comp.formula_weight 248.211 _chem_comp.id T9W _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-(2,5-Dioxopyrrolidin-1-yl)phenoxy]acetate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-[4-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]phenoxy]ethanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O09 C08 T9W doub 324 n n C08 C10 T9W sing 325 n n C08 N07 T9W sing 326 n n O18 C16 T9W doub 327 n n C10 C11 T9W sing 328 n n C16 O17 T9W sing 329 n n C16 C15 T9W sing 330 n n C15 O14 T9W sing 331 n n C01 C02 T9W doub 332 n y C01 C06 T9W sing 333 n y C02 C03 T9W sing 334 n y N07 C06 T9W sing 335 n n N07 C12 T9W sing 336 n n C06 C05 T9W doub 337 n y C03 O14 T9W sing 338 n n C03 C04 T9W doub 339 n y C05 C04 T9W sing 340 n y C11 C12 T9W sing 341 n n C12 O13 T9W doub 342 n n C10 H1 T9W sing 343 n n C15 H2 T9W sing 344 n n C15 H3 T9W sing 345 n n C01 H4 T9W sing 346 n n C02 H5 T9W sing 347 n n C04 H6 T9W sing 348 n n C05 H7 T9W sing 349 n n C11 H8 T9W sing 350 n n C10 H10 T9W sing 351 n n C11 H11 T9W sing 352 n n # _atom_sites.entry_id 7BCF _atom_sites.fract_transf_matrix[1][1] 0.016471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 2 SO4 A 1 503 1 SO4 SO4 . E 2 SO4 A 1 504 8 SO4 SO4 . F 2 SO4 A 1 505 9 SO4 SO4 . G 2 SO4 A 1 506 10 SO4 SO4 . H 4 T9W A 1 507 1 T9W LIG . I 5 HOH A 1 601 1084 HOH HOH . I 5 HOH A 2 602 31 HOH HOH . I 5 HOH A 3 603 1058 HOH HOH . I 5 HOH A 4 604 1018 HOH HOH . I 5 HOH A 5 605 1062 HOH HOH . I 5 HOH A 6 606 1059 HOH HOH . I 5 HOH A 7 607 23 HOH HOH . I 5 HOH A 8 608 1007 HOH HOH . I 5 HOH A 9 609 1016 HOH HOH . I 5 HOH A 10 610 1190 HOH HOH . I 5 HOH A 11 611 1001 HOH HOH . I 5 HOH A 12 612 1082 HOH HOH . I 5 HOH A 13 613 1036 HOH HOH . I 5 HOH A 14 614 1051 HOH HOH . I 5 HOH A 15 615 1033 HOH HOH . I 5 HOH A 16 616 1031 HOH HOH . I 5 HOH A 17 617 1045 HOH HOH . I 5 HOH A 18 618 1046 HOH HOH . I 5 HOH A 19 619 28 HOH HOH . I 5 HOH A 20 620 1006 HOH HOH . I 5 HOH A 21 621 1043 HOH HOH . I 5 HOH A 22 622 1004 HOH HOH . I 5 HOH A 23 623 1029 HOH HOH . I 5 HOH A 24 624 1197 HOH HOH . I 5 HOH A 25 625 1118 HOH HOH . I 5 HOH A 26 626 1041 HOH HOH . I 5 HOH A 27 627 1017 HOH HOH . I 5 HOH A 28 628 1054 HOH HOH . I 5 HOH A 29 629 1037 HOH HOH . I 5 HOH A 30 630 1091 HOH HOH . I 5 HOH A 31 631 12 HOH HOH . I 5 HOH A 32 632 1149 HOH HOH . I 5 HOH A 33 633 1064 HOH HOH . I 5 HOH A 34 634 36 HOH HOH . I 5 HOH A 35 635 1003 HOH HOH . I 5 HOH A 36 636 1098 HOH HOH . I 5 HOH A 37 637 1040 HOH HOH . I 5 HOH A 38 638 1073 HOH HOH . I 5 HOH A 39 639 11 HOH HOH . I 5 HOH A 40 640 1196 HOH HOH . I 5 HOH A 41 641 1063 HOH HOH . I 5 HOH A 42 642 13 HOH HOH . I 5 HOH A 43 643 57 HOH HOH . I 5 HOH A 44 644 1005 HOH HOH . I 5 HOH A 45 645 1012 HOH HOH . I 5 HOH A 46 646 1026 HOH HOH . I 5 HOH A 47 647 1010 HOH HOH . I 5 HOH A 48 648 1039 HOH HOH . I 5 HOH A 49 649 1015 HOH HOH . I 5 HOH A 50 650 1030 HOH HOH . I 5 HOH A 51 651 1023 HOH HOH . I 5 HOH A 52 652 1077 HOH HOH . I 5 HOH A 53 653 1038 HOH HOH . I 5 HOH A 54 654 1109 HOH HOH . I 5 HOH A 55 655 1014 HOH HOH . I 5 HOH A 56 656 34 HOH HOH . I 5 HOH A 57 657 1002 HOH HOH . I 5 HOH A 58 658 1035 HOH HOH . I 5 HOH A 59 659 1019 HOH HOH . I 5 HOH A 60 660 1086 HOH HOH . I 5 HOH A 61 661 30 HOH HOH . I 5 HOH A 62 662 1042 HOH HOH . I 5 HOH A 63 663 1011 HOH HOH . I 5 HOH A 64 664 1092 HOH HOH . I 5 HOH A 65 665 48 HOH HOH . I 5 HOH A 66 666 1020 HOH HOH . I 5 HOH A 67 667 1022 HOH HOH . I 5 HOH A 68 668 4 HOH HOH . I 5 HOH A 69 669 1065 HOH HOH . I 5 HOH A 70 670 1078 HOH HOH . I 5 HOH A 71 671 1142 HOH HOH . I 5 HOH A 72 672 1074 HOH HOH . I 5 HOH A 73 673 1080 HOH HOH . I 5 HOH A 74 674 29 HOH HOH . I 5 HOH A 75 675 1049 HOH HOH . I 5 HOH A 76 676 1198 HOH HOH . I 5 HOH A 77 677 1057 HOH HOH . I 5 HOH A 78 678 1068 HOH HOH . I 5 HOH A 79 679 5 HOH HOH . I 5 HOH A 80 680 33 HOH HOH . I 5 HOH A 81 681 1112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 T9W . . . H 4 -1.592 -6.546 5.299 1 25.25 ? C10 T9W 507 A 1 HETATM 2 C C15 T9W . . . H 4 6.636 -4.222 6.004 1 24.16 ? C15 T9W 507 A 1 HETATM 3 C C01 T9W . . . H 4 1.91 -3.928 6.007 1 24.38 ? C01 T9W 507 A 1 HETATM 4 C C02 T9W . . . H 4 3.137 -3.29 6.037 1 24.91 ? C02 T9W 507 A 1 HETATM 5 C C03 T9W . . . H 4 4.291 -4.038 6.212 1 24.22 ? C03 T9W 507 A 1 HETATM 6 C C04 T9W . . . H 4 4.239 -5.416 6.365 1 30.15 ? C04 T9W 507 A 1 HETATM 7 C C05 T9W . . . H 4 3.01 -6.055 6.335 1 28.84 ? C05 T9W 507 A 1 HETATM 8 C C06 T9W . . . H 4 1.851 -5.306 6.164 1 28.03 ? C06 T9W 507 A 1 HETATM 9 C C08 T9W . . . H 4 -0.499 -5.68 5.095 1 29.63 ? C08 T9W 507 A 1 HETATM 10 C C11 T9W . . . H 4 -1.127 -7.58 6.474 1 33.05 ? C11 T9W 507 A 1 HETATM 11 C C12 T9W . . . H 4 0.108 -7.121 6.973 1 33.17 ? C12 T9W 507 A 1 HETATM 12 C C16 T9W . . . H 4 7.789 -3.29 5.653 1 22.62 ? C16 T9W 507 A 1 HETATM 13 N N07 T9W . . . H 4 0.572 -5.986 6.107 1 27.13 ? N07 T9W 507 A 1 HETATM 14 O O09 T9W . . . H 4 -0.399 -4.826 4.284 1 29.14 ? O09 T9W 507 A 1 HETATM 15 O O13 T9W . . . H 4 0.688 -7.531 7.922 1 38.7 ? O13 T9W 507 A 1 HETATM 16 O O14 T9W . . . H 4 5.525 -3.393 6.239 1 27.23 ? O14 T9W 507 A 1 HETATM 17 O O17 T9W . . . H 4 8.986 -3.669 5.8 1 26.41 ? O17 T9W 507 A 1 HETATM 18 O O18 T9W . . . H 4 7.518 -2.132 5.222 1 20.01 -1 O18 T9W 507 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #