data_7BCI # _model_server_result.job_id aNYhRReSLXTVyQF_7pNnGw _model_server_result.datetime_utc '2024-11-22 20:10:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 7BCI # _exptl.entry_id 7BCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.216 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(4-methyl-2-oxidanyl-phenyl)propanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BCI _cell.length_a 59.921 _cell.length_b 72.976 _cell.length_c 78.993 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C10 H13 N O2' _chem_comp.formula_weight 179.216 _chem_comp.id GVV _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(4-methyl-2-oxidanyl-phenyl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GVV sing 129 n n C6 C5 GVV doub 130 n y C6 C7 GVV sing 131 n y C5 C4 GVV sing 132 n y C10 C7 GVV sing 133 n n O1 C3 GVV doub 134 n n C7 C8 GVV doub 135 n y C3 C2 GVV sing 136 n n C3 N1 GVV sing 137 n n C4 N1 GVV sing 138 n n C4 C9 GVV doub 139 n y C8 C9 GVV sing 140 n y C9 O2 GVV sing 141 n n N1 H1 GVV sing 142 n n C5 H2 GVV sing 143 n n C6 H3 GVV sing 144 n n C8 H4 GVV sing 145 n n C10 H5 GVV sing 146 n n C10 H6 GVV sing 147 n n C10 H7 GVV sing 148 n n C1 H8 GVV sing 149 n n C1 H9 GVV sing 150 n n C1 H10 GVV sing 151 n n C2 H11 GVV sing 152 n n C2 H12 GVV sing 153 n n O2 H13 GVV sing 154 n n # _atom_sites.entry_id 7BCI _atom_sites.fract_transf_matrix[1][1] 0.016689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 2 SO4 A 1 503 1 SO4 SO4 . E 2 SO4 A 1 504 8 SO4 SO4 . F 2 SO4 A 1 505 9 SO4 SO4 . G 2 SO4 A 1 506 10 SO4 SO4 . H 4 GVV A 1 507 1 GVV LIG . I 4 GVV A 1 508 2 GVV LIG . J 5 HOH A 1 601 1118 HOH HOH . J 5 HOH A 2 602 1008 HOH HOH . J 5 HOH A 3 603 1003 HOH HOH . J 5 HOH A 4 604 1086 HOH HOH . J 5 HOH A 5 605 1047 HOH HOH . J 5 HOH A 6 606 1046 HOH HOH . J 5 HOH A 7 607 1073 HOH HOH . J 5 HOH A 8 608 1045 HOH HOH . J 5 HOH A 9 609 1038 HOH HOH . J 5 HOH A 10 610 1004 HOH HOH . J 5 HOH A 11 611 1041 HOH HOH . J 5 HOH A 12 612 1058 HOH HOH . J 5 HOH A 13 613 57 HOH HOH . J 5 HOH A 14 614 1051 HOH HOH . J 5 HOH A 15 615 1013 HOH HOH . J 5 HOH A 16 616 1020 HOH HOH . J 5 HOH A 17 617 1001 HOH HOH . J 5 HOH A 18 618 1037 HOH HOH . J 5 HOH A 19 619 1197 HOH HOH . J 5 HOH A 20 620 1005 HOH HOH . J 5 HOH A 21 621 1050 HOH HOH . J 5 HOH A 22 622 1040 HOH HOH . J 5 HOH A 23 623 1063 HOH HOH . J 5 HOH A 24 624 1048 HOH HOH . J 5 HOH A 25 625 1031 HOH HOH . J 5 HOH A 26 626 1007 HOH HOH . J 5 HOH A 27 627 1052 HOH HOH . J 5 HOH A 28 628 1067 HOH HOH . J 5 HOH A 29 629 1029 HOH HOH . J 5 HOH A 30 630 1023 HOH HOH . J 5 HOH A 31 631 1068 HOH HOH . J 5 HOH A 32 632 1002 HOH HOH . J 5 HOH A 33 633 1012 HOH HOH . J 5 HOH A 34 634 1030 HOH HOH . J 5 HOH A 35 635 1015 HOH HOH . J 5 HOH A 36 636 1006 HOH HOH . J 5 HOH A 37 637 1026 HOH HOH . J 5 HOH A 38 638 1065 HOH HOH . J 5 HOH A 39 639 1114 HOH HOH . J 5 HOH A 40 640 1014 HOH HOH . J 5 HOH A 41 641 1016 HOH HOH . J 5 HOH A 42 642 26 HOH HOH . J 5 HOH A 43 643 1142 HOH HOH . J 5 HOH A 44 644 1042 HOH HOH . J 5 HOH A 45 645 1011 HOH HOH . J 5 HOH A 46 646 1057 HOH HOH . J 5 HOH A 47 647 1081 HOH HOH . J 5 HOH A 48 648 1049 HOH HOH . J 5 HOH A 49 649 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GVV . . . H 4 2.215 -3.155 5.903 1 33.06 ? N1 GVV 507 A 1 HETATM 2 C C4 GVV . . . H 4 1.15 -4.09 5.617 1 37.2 ? C4 GVV 507 A 1 HETATM 3 C C5 GVV . . . H 4 0.384 -4.65 6.624 1 34.5 ? C5 GVV 507 A 1 HETATM 4 C C6 GVV . . . H 4 -0.629 -5.535 6.292 1 37.4 ? C6 GVV 507 A 1 HETATM 5 C C7 GVV . . . H 4 -0.869 -5.848 4.962 1 31.71 ? C7 GVV 507 A 1 HETATM 6 C C8 GVV . . . H 4 -0.103 -5.279 3.962 1 31.26 ? C8 GVV 507 A 1 HETATM 7 C C10 GVV . . . H 4 -1.982 -6.822 4.588 1 31.38 ? C10 GVV 507 A 1 HETATM 8 C C1 GVV . . . H 4 6.047 -2.93 5.918 1 40.85 ? C1 GVV 507 A 1 HETATM 9 C C2 GVV . . . H 4 4.621 -2.52 6.266 1 30.31 ? C2 GVV 507 A 1 HETATM 10 C C3 GVV . . . H 4 3.592 -3.587 5.979 1 34.39 ? C3 GVV 507 A 1 HETATM 11 O O1 GVV . . . H 4 3.923 -4.716 5.825 1 37.8 ? O1 GVV 507 A 1 HETATM 12 C C9 GVV . . . H 4 0.908 -4.398 4.295 1 36.02 ? C9 GVV 507 A 1 HETATM 13 O O2 GVV . . . H 4 1.703 -3.809 3.307 1 33.25 ? O2 GVV 507 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 13 #