data_7BCK # _model_server_result.job_id IwW0ZriQU-jlObpODOBFEg _model_server_result.datetime_utc '2024-11-26 18:01:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7BCK # _exptl.entry_id 7BCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 235.279 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-N-(4-Methoxybenzyl)tetrahydrofuran-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BCK _cell.length_a 59.813 _cell.length_b 73.85 _cell.length_c 78.975 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'C13 H17 N O3' _chem_comp.formula_weight 235.279 _chem_comp.id T9B _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-N-(4-Methoxybenzyl)tetrahydrofuran-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2~{S})-~{N}-[(4-methoxyphenyl)methyl]oxolane-2-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 O17 T9B sing 294 n n C16 C15 T9B sing 295 n n O17 C13 T9B sing 296 n n C15 C14 T9B sing 297 n n C13 C14 T9B sing 298 n n C13 C11 T9B sing 299 n n N10 C11 T9B sing 300 n n N10 C09 T9B sing 301 n n C11 O12 T9B doub 302 n n C09 C06 T9B sing 303 n n C07 C06 T9B doub 304 n y C07 C08 T9B sing 305 n y C06 C05 T9B sing 306 n y C08 C03 T9B doub 307 n y C05 C04 T9B doub 308 n y C03 C04 T9B sing 309 n y C03 O02 T9B sing 310 n n O02 C01 T9B sing 311 n n C13 H1 T9B sing 312 n n C15 H2 T9B sing 313 n n C15 H3 T9B sing 314 n n C01 H4 T9B sing 315 n n C01 H5 T9B sing 316 n n C01 H6 T9B sing 317 n n C04 H7 T9B sing 318 n n C05 H8 T9B sing 319 n n C07 H9 T9B sing 320 n n C08 H10 T9B sing 321 n n C09 H11 T9B sing 322 n n C09 H12 T9B sing 323 n n C14 H13 T9B sing 324 n n C14 H14 T9B sing 325 n n C16 H15 T9B sing 326 n n C16 H16 T9B sing 327 n n N10 H17 T9B sing 328 n n # _atom_sites.entry_id 7BCK _atom_sites.fract_transf_matrix[1][1] 0.016719 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 2 SO4 A 1 502 8 SO4 SO4 . D 3 T9B A 1 503 1 T9B LIG . E 4 HOH A 1 601 1027 HOH HOH . E 4 HOH A 2 602 1052 HOH HOH . E 4 HOH A 3 603 1046 HOH HOH . E 4 HOH A 4 604 1197 HOH HOH . E 4 HOH A 5 605 1033 HOH HOH . E 4 HOH A 6 606 1047 HOH HOH . E 4 HOH A 7 607 1001 HOH HOH . E 4 HOH A 8 608 1123 HOH HOH . E 4 HOH A 9 609 1003 HOH HOH . E 4 HOH A 10 610 1054 HOH HOH . E 4 HOH A 11 611 36 HOH HOH . E 4 HOH A 12 612 1149 HOH HOH . E 4 HOH A 13 613 1004 HOH HOH . E 4 HOH A 14 614 1050 HOH HOH . E 4 HOH A 15 615 1007 HOH HOH . E 4 HOH A 16 616 1029 HOH HOH . E 4 HOH A 17 617 1040 HOH HOH . E 4 HOH A 18 618 1045 HOH HOH . E 4 HOH A 19 619 1064 HOH HOH . E 4 HOH A 20 620 1059 HOH HOH . E 4 HOH A 21 621 1078 HOH HOH . E 4 HOH A 22 622 1065 HOH HOH . E 4 HOH A 23 623 1036 HOH HOH . E 4 HOH A 24 624 1063 HOH HOH . E 4 HOH A 25 625 1048 HOH HOH . E 4 HOH A 26 626 1008 HOH HOH . E 4 HOH A 27 627 1038 HOH HOH . E 4 HOH A 28 628 1006 HOH HOH . E 4 HOH A 29 629 56 HOH HOH . E 4 HOH A 30 630 1031 HOH HOH . E 4 HOH A 31 631 1051 HOH HOH . E 4 HOH A 32 632 1002 HOH HOH . E 4 HOH A 33 633 1026 HOH HOH . E 4 HOH A 34 634 1016 HOH HOH . E 4 HOH A 35 635 1073 HOH HOH . E 4 HOH A 36 636 1120 HOH HOH . E 4 HOH A 37 637 1015 HOH HOH . E 4 HOH A 38 638 1190 HOH HOH . E 4 HOH A 39 639 1058 HOH HOH . E 4 HOH A 40 640 1014 HOH HOH . E 4 HOH A 41 641 1019 HOH HOH . E 4 HOH A 42 642 1077 HOH HOH . E 4 HOH A 43 643 1020 HOH HOH . E 4 HOH A 44 644 1081 HOH HOH . E 4 HOH A 45 645 1012 HOH HOH . E 4 HOH A 46 646 1041 HOH HOH . E 4 HOH A 47 647 1085 HOH HOH . E 4 HOH A 48 648 1005 HOH HOH . E 4 HOH A 49 649 1074 HOH HOH . E 4 HOH A 50 650 1062 HOH HOH . E 4 HOH A 51 651 1011 HOH HOH . E 4 HOH A 52 652 1030 HOH HOH . E 4 HOH A 53 653 1035 HOH HOH . E 4 HOH A 54 654 60 HOH HOH . E 4 HOH A 55 655 7 HOH HOH . E 4 HOH A 56 656 1013 HOH HOH . E 4 HOH A 57 657 1010 HOH HOH . E 4 HOH A 58 658 57 HOH HOH . E 4 HOH A 59 659 1106 HOH HOH . E 4 HOH A 60 660 1023 HOH HOH . E 4 HOH A 61 661 1115 HOH HOH . E 4 HOH A 62 662 1039 HOH HOH . E 4 HOH A 63 663 34 HOH HOH . E 4 HOH A 64 664 1042 HOH HOH . E 4 HOH A 65 665 1049 HOH HOH . E 4 HOH A 66 666 1080 HOH HOH . E 4 HOH A 67 667 1113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 T9B . . . D 3 0.25 -5 6.207 1 24.69 ? C13 T9B 503 A 1 HETATM 2 C C15 T9B . . . D 3 -1.699 -6.072 5.385 1 24.74 ? C15 T9B 503 A 1 HETATM 3 C C01 T9B . . . D 3 -0.802 -13.641 9.305 1 23.58 ? C01 T9B 503 A 1 HETATM 4 C C03 T9B . . . D 3 -0.488 -11.401 8.557 1 21.43 ? C03 T9B 503 A 1 HETATM 5 C C04 T9B . . . D 3 -0.798 -10.059 8.772 1 24.43 ? C04 T9B 503 A 1 HETATM 6 C C05 T9B . . . D 3 0.048 -9.054 8.329 1 25.32 ? C05 T9B 503 A 1 HETATM 7 C C06 T9B . . . D 3 1.215 -9.355 7.668 1 21.43 ? C06 T9B 503 A 1 HETATM 8 C C07 T9B . . . D 3 1.544 -10.698 7.438 1 22.78 ? C07 T9B 503 A 1 HETATM 9 C C08 T9B . . . D 3 0.684 -11.722 7.883 1 21.18 ? C08 T9B 503 A 1 HETATM 10 C C09 T9B . . . D 3 2.174 -8.245 7.206 1 25.2 ? C09 T9B 503 A 1 HETATM 11 C C11 T9B . . . D 3 0.904 -6.049 7.062 1 24.74 ? C11 T9B 503 A 1 HETATM 12 C C14 T9B . . . D 3 -1.371 -5.269 6.36 1 27.44 ? C14 T9B 503 A 1 HETATM 13 C C16 T9B . . . D 3 -0.676 -5.769 4.23 1 22.78 ? C16 T9B 503 A 1 HETATM 14 N N10 T9B . . . D 3 1.511 -7.193 6.413 1 20.68 ? N10 T9B 503 A 1 HETATM 15 O O02 T9B . . . D 3 -1.372 -12.372 9.033 1 25.26 ? O02 T9B 503 A 1 HETATM 16 O O12 T9B . . . D 3 0.915 -5.963 8.263 1 25.12 ? O12 T9B 503 A 1 HETATM 17 O O17 T9B . . . D 3 0.576 -5.235 4.942 1 26.92 ? O17 T9B 503 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #