data_7BCM
#
_model_server_result.job_id            KETlZmfhD8NGwEk4Leg9Gg 
_model_server_result.datetime_utc      '2025-01-26 00:08:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bcm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    7BCM 
#
_exptl.entry_id    7BCM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              622.778 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{S})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.348 
_cell.angle_gamma         90 
_cell.entry_id            7BCM 
_cell.length_a            56.223 
_cell.length_b            120.402 
_cell.length_c            62.095 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BCM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C32 H42 N6 O5 S' 
_chem_comp.formula_weight    622.778 
_chem_comp.id                TBK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{S})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C30 C29 TBK sing 290 n y 
C30 C31 TBK doub 291 n y 
C29 C28 TBK doub 292 n y 
C31 C27 TBK sing 293 n y 
C28 N5 TBK sing 294 n y 
C27 N5 TBK sing 295 n y 
C27 N4 TBK doub 296 n y 
N5 C25 TBK sing 297 n y 
N4 C26 TBK sing 298 n y 
C25 C26 TBK doub 299 n y 
C25 C24 TBK sing 300 n n 
O4 C24 TBK doub 301 n n 
C24 N3 TBK sing 302 n n 
N3 C23 TBK sing 303 n n 
C19 C18 TBK doub 304 n y 
C19 C22 TBK sing 305 n y 
C23 C22 TBK sing 306 n n 
C18 C17 TBK sing 307 n y 
C22 C21 TBK doub 308 n y 
C7 C8 TBK sing 309 n n 
C7 C6 TBK sing 310 n n 
C8 C3 TBK sing 311 n n 
C17 C20 TBK doub 312 n y 
C17 C TBK sing 313 n n 
C21 C20 TBK sing 314 n y 
O C TBK doub 315 n n 
C6 N2 TBK sing 316 n n 
C N TBK sing 317 n n 
C3 N1 TBK sing 318 n n 
C3 C4 TBK sing 319 n n 
N1 C2 TBK sing 320 n n 
N C1 TBK sing 321 n n 
C4 N2 TBK sing 322 n n 
N2 S TBK sing 323 n n 
C1 C2 TBK sing 324 n n 
C1 C9 TBK sing 325 n n 
C2 O3 TBK doub 326 n n 
C13 C12 TBK sing 327 n n 
C13 C14 TBK sing 328 n n 
O2 S TBK doub 329 n n 
S O1 TBK doub 330 n n 
S C5 TBK sing 331 n n 
C12 C11 TBK sing 332 n n 
C11 C10 TBK sing 333 n n 
C11 C16 TBK sing 334 n n 
C14 C15 TBK sing 335 n n 
C10 C9 TBK sing 336 n n 
C15 C16 TBK sing 337 n n 
C1 H1 TBK sing 338 n n 
C3 H2 TBK sing 339 n n 
C5 H3 TBK sing 340 n n 
C5 H4 TBK sing 341 n n 
C5 H5 TBK sing 342 n n 
C6 H6 TBK sing 343 n n 
C6 H7 TBK sing 344 n n 
C28 H8 TBK sing 345 n n 
C26 H9 TBK sing 346 n n 
C29 H10 TBK sing 347 n n 
C30 H11 TBK sing 348 n n 
C20 H12 TBK sing 349 n n 
C13 H13 TBK sing 350 n n 
C13 H14 TBK sing 351 n n 
C12 H15 TBK sing 352 n n 
C12 H16 TBK sing 353 n n 
C9 H17 TBK sing 354 n n 
C9 H18 TBK sing 355 n n 
N H19 TBK sing 356 n n 
C10 H20 TBK sing 357 n n 
C10 H21 TBK sing 358 n n 
C11 H22 TBK sing 359 n n 
C14 H23 TBK sing 360 n n 
C14 H24 TBK sing 361 n n 
C15 H25 TBK sing 362 n n 
C15 H26 TBK sing 363 n n 
C16 H27 TBK sing 364 n n 
C16 H28 TBK sing 365 n n 
C18 H29 TBK sing 366 n n 
C19 H30 TBK sing 367 n n 
C21 H31 TBK sing 368 n n 
C23 H32 TBK sing 369 n n 
C23 H33 TBK sing 370 n n 
C31 H34 TBK sing 371 n n 
C4 H35 TBK sing 372 n n 
C4 H36 TBK sing 373 n n 
C7 H37 TBK sing 374 n n 
C7 H38 TBK sing 375 n n 
C8 H39 TBK sing 376 n n 
C8 H40 TBK sing 377 n n 
N1 H41 TBK sing 378 n n 
N3 H42 TBK sing 379 n n 
#
_atom_sites.entry_id                     7BCM 
_atom_sites.fract_transf_matrix[1][1]    0.017786 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006952 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008306 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TBK A 1 1001 1 TBK 302 . 
D 2 TBK B 1 1001 2 TBK 302 . 
E 3 HOH A 1 1101 11 HOH HOH . 
E 3 HOH A 2 1102 7 HOH HOH . 
E 3 HOH A 3 1103 4 HOH HOH . 
E 3 HOH A 4 1104 5 HOH HOH . 
E 3 HOH A 5 1105 8 HOH HOH . 
E 3 HOH A 6 1106 1 HOH HOH . 
E 3 HOH A 7 1107 20 HOH HOH . 
E 3 HOH A 8 1108 18 HOH HOH . 
E 3 HOH A 9 1109 13 HOH HOH . 
E 3 HOH A 10 1110 19 HOH HOH . 
F 3 HOH B 1 1101 21 HOH HOH . 
F 3 HOH B 2 1102 9 HOH HOH . 
F 3 HOH B 3 1103 3 HOH HOH . 
F 3 HOH B 4 1104 6 HOH HOH . 
F 3 HOH B 5 1105 12 HOH HOH . 
F 3 HOH B 6 1106 10 HOH HOH . 
F 3 HOH B 7 1107 2 HOH HOH . 
F 3 HOH B 8 1108 16 HOH HOH . 
F 3 HOH B 9 1109 15 HOH HOH . 
F 3 HOH B 10 1110 17 HOH HOH . 
F 3 HOH B 11 1111 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TBK . . . C 2 -14.903 -19.423 27.621 1 26.15 ? C1 TBK 1001 A 1 
HETATM 2 C C3 TBK . . . C 2 -17.983 -21.409 26.538 1 32.25 ? C3 TBK 1001 A 1 
HETATM 3 C C5 TBK . . . C 2 -18.819 -23.985 29.942 1 27.89 ? C5 TBK 1001 A 1 
HETATM 4 C C6 TBK . . . C 2 -19.626 -23.713 25.943 1 44.44 ? C6 TBK 1001 A 1 
HETATM 5 N N2 TBK . . . C 2 -19.075 -23.452 27.286 1 41.46 ? N2 TBK 1001 A 1 
HETATM 6 N N4 TBK . . . C 2 -9.573 -11.467 20.514 1 31.89 ? N4 TBK 1001 A 1 
HETATM 7 C C28 TBK . . . C 2 -12.504 -12.15 18.615 1 32.19 ? C28 TBK 1001 A 1 
HETATM 8 C C27 TBK . . . C 2 -10.251 -11.664 19.38 1 30.84 ? C27 TBK 1001 A 1 
HETATM 9 C C26 TBK . . . C 2 -10.51 -11.612 21.514 1 32.13 ? C26 TBK 1001 A 1 
HETATM 10 C C29 TBK . . . C 2 -12.082 -12.164 17.33 1 30.76 ? C29 TBK 1001 A 1 
HETATM 11 C C30 TBK . . . C 2 -10.719 -11.937 17.028 1 34.12 ? C30 TBK 1001 A 1 
HETATM 12 C C24 TBK . . . C 2 -13.03 -12.271 21.68 1 26.03 ? C24 TBK 1001 A 1 
HETATM 13 C C20 TBK . . . C 2 -15.087 -15.495 25.882 1 29.74 ? C20 TBK 1001 A 1 
HETATM 14 C C13 TBK . . . C 2 -9.961 -21.603 27.987 1 30.6 ? C13 TBK 1001 A 1 
HETATM 15 C C12 TBK . . . C 2 -10.705 -20.335 28.387 1 22.19 ? C12 TBK 1001 A 1 
HETATM 16 C C9 TBK . . . C 2 -14.361 -19.266 29.037 1 27.98 ? C9 TBK 1001 A 1 
HETATM 17 N N TBK . . . C 2 -14.989 -18.143 26.931 1 29.27 ? N TBK 1001 A 1 
HETATM 18 C C TBK . . . C 2 -14.1 -17.81 25.987 1 27.27 ? C TBK 1001 A 1 
HETATM 19 O O TBK . . . C 2 -13.189 -18.572 25.677 1 28.34 ? O TBK 1001 A 1 
HETATM 20 C C10 TBK . . . C 2 -12.849 -19.261 29.034 1 32.42 ? C10 TBK 1001 A 1 
HETATM 21 C C11 TBK . . . C 2 -12.192 -20.571 28.59 1 27.34 ? C11 TBK 1001 A 1 
HETATM 22 C C14 TBK . . . C 2 -10.141 -22.685 29.025 1 23.06 ? C14 TBK 1001 A 1 
HETATM 23 C C15 TBK . . . C 2 -11.615 -22.967 29.257 1 27.67 ? C15 TBK 1001 A 1 
HETATM 24 C C16 TBK . . . C 2 -12.404 -21.697 29.597 1 25.63 ? C16 TBK 1001 A 1 
HETATM 25 C C17 TBK . . . C 2 -14.247 -16.463 25.34 1 25.73 ? C17 TBK 1001 A 1 
HETATM 26 C C18 TBK . . . C 2 -13.481 -16.12 24.225 1 31.45 ? C18 TBK 1001 A 1 
HETATM 27 C C19 TBK . . . C 2 -13.514 -14.832 23.709 1 29.97 ? C19 TBK 1001 A 1 
HETATM 28 C C2 TBK . . . C 2 -16.238 -20.158 27.722 1 25.88 ? C2 TBK 1001 A 1 
HETATM 29 C C21 TBK . . . C 2 -15.109 -14.204 25.37 1 32.23 ? C21 TBK 1001 A 1 
HETATM 30 C C22 TBK . . . C 2 -14.305 -13.845 24.292 1 28.58 ? C22 TBK 1001 A 1 
HETATM 31 C C23 TBK . . . C 2 -14.266 -12.416 23.8 1 25.07 ? C23 TBK 1001 A 1 
HETATM 32 C C25 TBK . . . C 2 -11.754 -11.899 21.029 1 29.03 ? C25 TBK 1001 A 1 
HETATM 33 C C31 TBK . . . C 2 -9.816 -11.678 18.029 1 36.44 ? C31 TBK 1001 A 1 
HETATM 34 C C4 TBK . . . C 2 -17.796 -22.727 27.257 1 37.7 ? C4 TBK 1001 A 1 
HETATM 35 C C7 TBK . . . C 2 -19.744 -22.449 25.106 1 37.66 ? C7 TBK 1001 A 1 
HETATM 36 C C8 TBK . . . C 2 -18.426 -21.679 25.115 1 33.68 ? C8 TBK 1001 A 1 
HETATM 37 N N1 TBK . . . C 2 -16.714 -20.694 26.595 1 28.1 ? N1 TBK 1001 A 1 
HETATM 38 N N3 TBK . . . C 2 -13.093 -12.067 23.003 1 30.45 ? N3 TBK 1001 A 1 
HETATM 39 N N5 TBK . . . C 2 -11.598 -11.915 19.634 1 33.19 ? N5 TBK 1001 A 1 
HETATM 40 O O1 TBK . . . C 2 -20.582 -25.053 28.38 1 58.89 ? O1 TBK 1001 A 1 
HETATM 41 O O2 TBK . . . C 2 -18.213 -25.623 28.047 1 54.89 ? O2 TBK 1001 A 1 
HETATM 42 O O3 TBK . . . C 2 -16.802 -20.262 28.809 1 25.49 ? O3 TBK 1001 A 1 
HETATM 43 O O4 TBK . . . C 2 -13.938 -12.781 21.04 1 33.28 ? O4 TBK 1001 A 1 
HETATM 44 S S TBK . . . C 2 -19.211 -24.656 28.373 1 60.42 ? S TBK 1001 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#