data_7BCM
#
_model_server_result.job_id            zELWdS4yQmygIiWS-0Cc2A 
_model_server_result.datetime_utc      '2025-01-11 17:53:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bcm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    7BCM 
#
_exptl.entry_id    7BCM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              622.778 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{S})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.348 
_cell.angle_gamma         90 
_cell.entry_id            7BCM 
_cell.length_a            56.223 
_cell.length_b            120.402 
_cell.length_c            62.095 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BCM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C32 H42 N6 O5 S' 
_chem_comp.formula_weight    622.778 
_chem_comp.id                TBK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{S})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C30 C29 TBK sing 290 n y 
C30 C31 TBK doub 291 n y 
C29 C28 TBK doub 292 n y 
C31 C27 TBK sing 293 n y 
C28 N5 TBK sing 294 n y 
C27 N5 TBK sing 295 n y 
C27 N4 TBK doub 296 n y 
N5 C25 TBK sing 297 n y 
N4 C26 TBK sing 298 n y 
C25 C26 TBK doub 299 n y 
C25 C24 TBK sing 300 n n 
O4 C24 TBK doub 301 n n 
C24 N3 TBK sing 302 n n 
N3 C23 TBK sing 303 n n 
C19 C18 TBK doub 304 n y 
C19 C22 TBK sing 305 n y 
C23 C22 TBK sing 306 n n 
C18 C17 TBK sing 307 n y 
C22 C21 TBK doub 308 n y 
C7 C8 TBK sing 309 n n 
C7 C6 TBK sing 310 n n 
C8 C3 TBK sing 311 n n 
C17 C20 TBK doub 312 n y 
C17 C TBK sing 313 n n 
C21 C20 TBK sing 314 n y 
O C TBK doub 315 n n 
C6 N2 TBK sing 316 n n 
C N TBK sing 317 n n 
C3 N1 TBK sing 318 n n 
C3 C4 TBK sing 319 n n 
N1 C2 TBK sing 320 n n 
N C1 TBK sing 321 n n 
C4 N2 TBK sing 322 n n 
N2 S TBK sing 323 n n 
C1 C2 TBK sing 324 n n 
C1 C9 TBK sing 325 n n 
C2 O3 TBK doub 326 n n 
C13 C12 TBK sing 327 n n 
C13 C14 TBK sing 328 n n 
O2 S TBK doub 329 n n 
S O1 TBK doub 330 n n 
S C5 TBK sing 331 n n 
C12 C11 TBK sing 332 n n 
C11 C10 TBK sing 333 n n 
C11 C16 TBK sing 334 n n 
C14 C15 TBK sing 335 n n 
C10 C9 TBK sing 336 n n 
C15 C16 TBK sing 337 n n 
C1 H1 TBK sing 338 n n 
C3 H2 TBK sing 339 n n 
C5 H3 TBK sing 340 n n 
C5 H4 TBK sing 341 n n 
C5 H5 TBK sing 342 n n 
C6 H6 TBK sing 343 n n 
C6 H7 TBK sing 344 n n 
C28 H8 TBK sing 345 n n 
C26 H9 TBK sing 346 n n 
C29 H10 TBK sing 347 n n 
C30 H11 TBK sing 348 n n 
C20 H12 TBK sing 349 n n 
C13 H13 TBK sing 350 n n 
C13 H14 TBK sing 351 n n 
C12 H15 TBK sing 352 n n 
C12 H16 TBK sing 353 n n 
C9 H17 TBK sing 354 n n 
C9 H18 TBK sing 355 n n 
N H19 TBK sing 356 n n 
C10 H20 TBK sing 357 n n 
C10 H21 TBK sing 358 n n 
C11 H22 TBK sing 359 n n 
C14 H23 TBK sing 360 n n 
C14 H24 TBK sing 361 n n 
C15 H25 TBK sing 362 n n 
C15 H26 TBK sing 363 n n 
C16 H27 TBK sing 364 n n 
C16 H28 TBK sing 365 n n 
C18 H29 TBK sing 366 n n 
C19 H30 TBK sing 367 n n 
C21 H31 TBK sing 368 n n 
C23 H32 TBK sing 369 n n 
C23 H33 TBK sing 370 n n 
C31 H34 TBK sing 371 n n 
C4 H35 TBK sing 372 n n 
C4 H36 TBK sing 373 n n 
C7 H37 TBK sing 374 n n 
C7 H38 TBK sing 375 n n 
C8 H39 TBK sing 376 n n 
C8 H40 TBK sing 377 n n 
N1 H41 TBK sing 378 n n 
N3 H42 TBK sing 379 n n 
#
_atom_sites.entry_id                     7BCM 
_atom_sites.fract_transf_matrix[1][1]    0.017786 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006952 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008306 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TBK A 1 1001 1 TBK 302 . 
D 2 TBK B 1 1001 2 TBK 302 . 
E 3 HOH A 1 1101 11 HOH HOH . 
E 3 HOH A 2 1102 7 HOH HOH . 
E 3 HOH A 3 1103 4 HOH HOH . 
E 3 HOH A 4 1104 5 HOH HOH . 
E 3 HOH A 5 1105 8 HOH HOH . 
E 3 HOH A 6 1106 1 HOH HOH . 
E 3 HOH A 7 1107 20 HOH HOH . 
E 3 HOH A 8 1108 18 HOH HOH . 
E 3 HOH A 9 1109 13 HOH HOH . 
E 3 HOH A 10 1110 19 HOH HOH . 
F 3 HOH B 1 1101 21 HOH HOH . 
F 3 HOH B 2 1102 9 HOH HOH . 
F 3 HOH B 3 1103 3 HOH HOH . 
F 3 HOH B 4 1104 6 HOH HOH . 
F 3 HOH B 5 1105 12 HOH HOH . 
F 3 HOH B 6 1106 10 HOH HOH . 
F 3 HOH B 7 1107 2 HOH HOH . 
F 3 HOH B 8 1108 16 HOH HOH . 
F 3 HOH B 9 1109 15 HOH HOH . 
F 3 HOH B 10 1110 17 HOH HOH . 
F 3 HOH B 11 1111 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TBK . . . D 2 -6.809 -45.634 -2.631 1 28.91 ? C1 TBK 1001 B 1 
HETATM 2 C C3 TBK . . . D 2 -3.836 -43.617 -1.344 1 35.49 ? C3 TBK 1001 B 1 
HETATM 3 C C5 TBK . . . D 2 -4.199 -41.249 2.594 1 58.83 ? C5 TBK 1001 B 1 
HETATM 4 C C6 TBK . . . D 2 -2.456 -41.094 -0.887 1 45.7 ? C6 TBK 1001 B 1 
HETATM 5 N N2 TBK . . . D 2 -3.602 -41.528 -0.063 1 49.65 ? N2 TBK 1001 B 1 
HETATM 6 N N4 TBK . . . D 2 -5.961 -53.715 -11.478 1 39.43 ? N4 TBK 1001 B 1 
HETATM 7 C C28 TBK . . . D 2 -2.66 -52.522 -10.908 1 34.83 ? C28 TBK 1001 B 1 
HETATM 8 C C27 TBK . . . D 2 -4.73 -53.352 -11.858 1 36.35 ? C27 TBK 1001 B 1 
HETATM 9 C C26 TBK . . . D 2 -5.981 -53.534 -10.117 1 34.12 ? C26 TBK 1001 B 1 
HETATM 10 C C29 TBK . . . D 2 -2.091 -52.503 -12.138 1 37.39 ? C29 TBK 1001 B 1 
HETATM 11 C C30 TBK . . . D 2 -2.826 -52.913 -13.267 1 32.65 ? C30 TBK 1001 B 1 
HETATM 12 C C24 TBK . . . D 2 -4.328 -52.687 -8.256 1 31.94 ? C24 TBK 1001 B 1 
HETATM 13 C C20 TBK . . . D 2 -5.75 -49.665 -3.717 1 31.59 ? C20 TBK 1001 B 1 
HETATM 14 C C13 TBK . . . D 2 -10.58 -43.639 -5.614 1 25.46 ? C13 TBK 1001 B 1 
HETATM 15 C C12 TBK . . . D 2 -10.114 -44.489 -4.431 1 27.09 ? C12 TBK 1001 B 1 
HETATM 16 C C9 TBK . . . D 2 -8.29 -45.804 -2.231 1 27.12 ? C9 TBK 1001 B 1 
HETATM 17 N N TBK . . . D 2 -6.223 -46.896 -3.042 1 28.92 ? N TBK 1001 B 1 
HETATM 18 C C TBK . . . D 2 -6.422 -47.313 -4.297 1 33.81 ? C TBK 1001 B 1 
HETATM 19 O O TBK . . . D 2 -7.063 -46.637 -5.117 1 28.76 ? O TBK 1001 B 1 
HETATM 20 C C10 TBK . . . D 2 -9.11 -44.521 -2.07 1 32.61 ? C10 TBK 1001 B 1 
HETATM 21 C C11 TBK . . . D 2 -9.502 -43.662 -3.301 1 31.74 ? C11 TBK 1001 B 1 
HETATM 22 C C14 TBK . . . D 2 -11.546 -42.571 -5.177 1 29.54 ? C14 TBK 1001 B 1 
HETATM 23 C C15 TBK . . . D 2 -10.924 -41.708 -4.081 1 26.75 ? C15 TBK 1001 B 1 
HETATM 24 C C16 TBK . . . D 2 -10.481 -42.564 -2.897 1 26.97 ? C16 TBK 1001 B 1 
HETATM 25 C C17 TBK . . . D 2 -5.837 -48.644 -4.659 1 30.65 ? C17 TBK 1001 B 1 
HETATM 26 C C18 TBK . . . D 2 -5.46 -48.924 -5.971 1 29.61 ? C18 TBK 1001 B 1 
HETATM 27 C C19 TBK . . . D 2 -5.085 -50.202 -6.34 1 31.69 ? C19 TBK 1001 B 1 
HETATM 28 C C2 TBK . . . D 2 -5.897 -44.967 -1.602 1 32.17 ? C2 TBK 1001 B 1 
HETATM 29 C C21 TBK . . . D 2 -5.373 -50.944 -4.093 1 37.58 ? C21 TBK 1001 B 1 
HETATM 30 C C22 TBK . . . D 2 -5.068 -51.242 -5.417 1 32.67 ? C22 TBK 1001 B 1 
HETATM 31 C C23 TBK . . . D 2 -4.848 -52.674 -5.862 1 30.03 ? C23 TBK 1001 B 1 
HETATM 32 C C25 TBK . . . D 2 -4.792 -53.063 -9.633 1 34.52 ? C25 TBK 1001 B 1 
HETATM 33 C C31 TBK . . . D 2 -4.121 -53.337 -13.14 1 35.84 ? C31 TBK 1001 B 1 
HETATM 34 C C4 TBK . . . D 2 -4.544 -42.38 -0.812 1 40.84 ? C4 TBK 1001 B 1 
HETATM 35 C C7 TBK . . . D 2 -1.716 -42.284 -1.475 1 33.88 ? C7 TBK 1001 B 1 
HETATM 36 C C8 TBK . . . D 2 -2.676 -43.199 -2.228 1 32.72 ? C8 TBK 1001 B 1 
HETATM 37 N N1 TBK . . . D 2 -4.774 -44.439 -2.103 1 34.05 ? N1 TBK 1001 B 1 
HETATM 38 N N3 TBK . . . D 2 -5.187 -52.946 -7.257 1 34.74 ? N3 TBK 1001 B 1 
HETATM 39 N N5 TBK . . . D 2 -3.972 -52.942 -10.768 1 29.53 ? N5 TBK 1001 B 1 
HETATM 40 O O1 TBK . . . D 2 -3.213 -39.387 1.09 1 73.25 ? O1 TBK 1001 B 1 
HETATM 41 O O2 TBK . . . D 2 -5.513 -40.144 0.67 1 55.55 ? O2 TBK 1001 B 1 
HETATM 42 O O3 TBK . . . D 2 -6.194 -44.928 -0.408 1 34 ? O3 TBK 1001 B 1 
HETATM 43 O O4 TBK . . . D 2 -3.23 -52.165 -8.064 1 31.66 ? O4 TBK 1001 B 1 
HETATM 44 S S TBK . . . D 2 -4.165 -40.449 1.033 1 70.8 ? S TBK 1001 B 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           44 
#