data_7BCW # _model_server_result.job_id HsSvDqC2XQ6VyZRFnFg0lw _model_server_result.datetime_utc '2024-12-13 10:29:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 7BCW # _exptl.entry_id 7BCW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BCW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 399 A SER 383 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A OE1 GLN 440 A GLN 424 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 C V VO4 . A VO4 601 1_555 D O1B ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc4 C O2 VO4 . A VO4 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 D O1B ADP . A ADP 602 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc6 B OG SER 399 B SER 383 1_555 I MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc7 B OE1 GLN 440 B GLN 424 1_555 I MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc8 G V VO4 . B VO4 601 1_555 H O2B ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc9 G O2 VO4 . B VO4 601 1_555 I MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc10 H O1B ADP . B ADP 602 1_555 I MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7BCW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VO4 A 1 601 601 VO4 VO4 . D 3 ADP A 1 602 602 ADP ADP . E 4 MG A 1 603 603 MG MG . F 5 POV A 1 604 701 POV POV . G 2 VO4 B 1 601 601 VO4 VO4 . H 3 ADP B 1 602 602 ADP ADP . I 4 MG B 1 603 603 MG MG . J 5 POV B 1 604 701 POV POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 3 132.483 144.712 175.135 1 42.2 ? PB ADP 602 B 1 HETATM 2 O O1B ADP . . . H 3 132.597 143.674 174.052 1 42.2 ? O1B ADP 602 B 1 HETATM 3 O O2B ADP . . . H 3 131.984 144.194 176.456 1 42.2 ? O2B ADP 602 B 1 HETATM 4 O O3B ADP . . . H 3 133.659 145.645 175.223 1 42.2 ? O3B ADP 602 B 1 HETATM 5 P PA ADP . . . H 3 131.668 146.672 173.403 1 42.2 ? PA ADP 602 B 1 HETATM 6 O O1A ADP . . . H 3 132.127 145.861 172.221 1 42.2 ? O1A ADP 602 B 1 HETATM 7 O O2A ADP . . . H 3 132.548 147.773 173.923 1 42.2 ? O2A ADP 602 B 1 HETATM 8 O O3A ADP . . . H 3 131.324 145.686 174.618 1 42.2 ? O3A ADP 602 B 1 HETATM 9 O O5' ADP . . . H 3 130.254 147.338 173.054 1 42.2 ? O5' ADP 602 B 1 HETATM 10 C C5' ADP . . . H 3 130.115 148.751 173.107 1 42.2 ? C5' ADP 602 B 1 HETATM 11 C C4' ADP . . . H 3 129.086 149.154 172.074 1 42.2 ? C4' ADP 602 B 1 HETATM 12 O O4' ADP . . . H 3 129.757 149.387 170.845 1 42.2 ? O4' ADP 602 B 1 HETATM 13 C C3' ADP . . . H 3 128.096 148.034 171.83 1 42.2 ? C3' ADP 602 B 1 HETATM 14 O O3' ADP . . . H 3 126.816 148.382 172.356 1 42.2 ? O3' ADP 602 B 1 HETATM 15 C C2' ADP . . . H 3 128.012 147.884 170.329 1 42.2 ? C2' ADP 602 B 1 HETATM 16 O O2' ADP . . . H 3 126.685 148.186 169.899 1 42.2 ? O2' ADP 602 B 1 HETATM 17 C C1' ADP . . . H 3 128.974 148.905 169.76 1 42.2 ? C1' ADP 602 B 1 HETATM 18 N N9 ADP . . . H 3 129.862 148.292 168.748 1 42.2 ? N9 ADP 602 B 1 HETATM 19 C C8 ADP . . . H 3 130.738 147.299 168.965 1 42.2 ? C8 ADP 602 B 1 HETATM 20 N N7 ADP . . . H 3 131.395 146.974 167.825 1 42.2 ? N7 ADP 602 B 1 HETATM 21 C C5 ADP . . . H 3 130.933 147.775 166.851 1 42.2 ? C5 ADP 602 B 1 HETATM 22 C C6 ADP . . . H 3 131.197 147.966 165.408 1 42.2 ? C6 ADP 602 B 1 HETATM 23 N N6 ADP . . . H 3 132.111 147.212 164.757 1 42.2 ? N6 ADP 602 B 1 HETATM 24 N N1 ADP . . . H 3 130.498 148.916 164.758 1 42.2 ? N1 ADP 602 B 1 HETATM 25 C C2 ADP . . . H 3 129.587 149.672 165.392 1 42.2 ? C2 ADP 602 B 1 HETATM 26 N N3 ADP . . . H 3 129.298 149.555 166.697 1 42.2 ? N3 ADP 602 B 1 HETATM 27 C C4 ADP . . . H 3 129.925 148.641 167.467 1 42.2 ? C4 ADP 602 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #