data_7BD0
#
_model_server_result.job_id            IIdoZv7aCZ8IFX1cEBVKlA 
_model_server_result.datetime_utc      '2024-11-15 03:05:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bd0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    7BD0 
#
_exptl.entry_id    7BD0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BD0 
_cell.length_a            78.298 
_cell.length_b            78.298 
_cell.length_c            37.571 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BD0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A O LYS 13 A LYS 13 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
metalc ? metalc2 A O SER 60 A SER 60 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc3 A O CYS 64 A CYS 64 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc4 A OG SER 72 A SER 72 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc5 A O ARG 73 A ARG 73 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc6 D NA NA . A NA 203 1_555 O O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc7 D NA NA . A NA 203 1_555 O O HOH . A HOH 435 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? 
metalc ? metalc8 E NA NA . A NA 204 1_555 O O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc9 E NA NA . A NA 204 1_555 O O HOH . A HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc10 G N1 IMD . A IMD 206 1_555 H RU RU . A RU 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc11 H RU RU . A RU 207 1_555 O O HOH . A HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc12 H RU RU . A RU 207 1_555 O O HOH . A HOH 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc13 H RU RU . A RU 207 1_555 O O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc14 H RU RU . A RU 207 1_555 O O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc15 J N1 IMD . A IMD 209 1_555 K RU RU . A RU 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc16 K RU RU . A RU 210 1_555 O O HOH . A HOH 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc17 K RU RU . A RU 210 1_555 O O HOH . A HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc18 K RU RU . A RU 210 1_555 O O HOH . A HOH 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc19 K RU RU . A RU 210 1_555 O O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc20 M N1 IMD . A IMD 212 1_555 N RU RU . A RU 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc21 N RU RU . A RU 213 1_555 O O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc22 N RU RU . A RU 213 1_555 O O HOH . A HOH 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc23 N RU RU . A RU 213 1_555 O O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc24 N RU RU . A RU 213 1_555 O O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc25 N RU RU . A RU 213 1_555 O O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 182 n y 
N1 C5 IMD sing 183 n y 
N1 HN1 IMD sing 184 n n 
C2 N3 IMD doub 185 n y 
C2 H2 IMD sing 186 n n 
N3 C4 IMD sing 187 n y 
N3 HN3 IMD sing 188 n n 
C4 C5 IMD doub 189 n y 
C4 H4 IMD sing 190 n n 
C5 H5 IMD sing 191 n n 
#
_atom_sites.entry_id                     7BD0 
_atom_sites.fract_transf_matrix[1][1]    0.012772 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026616 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 201 1 EDO EDO . 
C 2 EDO A 1 202 2 EDO EDO . 
D 3 NA A 1 203 1 NA NA . 
E 3 NA A 1 204 2 NA NA . 
F 3 NA A 1 205 3 NA NA . 
G 4 IMD A 1 206 1 IMD IMD . 
H 5 RU A 1 207 3 RU RU . 
I 6 CL A 1 208 4 CL CL . 
J 4 IMD A 1 209 1 IMD IMD . 
K 5 RU A 1 210 3 RU RU . 
L 6 CL A 1 211 5 CL CL . 
M 4 IMD A 1 212 1 IMD IMD . 
N 5 RU A 1 213 3 RU RU . 
O 7 HOH A 1 301 38 HOH HOH . 
O 7 HOH A 2 302 177 HOH HOH . 
O 7 HOH A 3 303 92 HOH HOH . 
O 7 HOH A 4 304 42 HOH HOH . 
O 7 HOH A 5 305 85 HOH HOH . 
O 7 HOH A 6 306 41 HOH HOH . 
O 7 HOH A 7 307 87 HOH HOH . 
O 7 HOH A 8 308 125 HOH HOH . 
O 7 HOH A 9 309 72 HOH HOH . 
O 7 HOH A 10 310 100 HOH HOH . 
O 7 HOH A 11 311 34 HOH HOH . 
O 7 HOH A 12 312 162 HOH HOH . 
O 7 HOH A 13 313 137 HOH HOH . 
O 7 HOH A 14 314 132 HOH HOH . 
O 7 HOH A 15 315 7 HOH HOH . 
O 7 HOH A 16 316 91 HOH HOH . 
O 7 HOH A 17 317 33 HOH HOH . 
O 7 HOH A 18 318 138 HOH HOH . 
O 7 HOH A 19 319 47 HOH HOH . 
O 7 HOH A 20 320 99 HOH HOH . 
O 7 HOH A 21 321 19 HOH HOH . 
O 7 HOH A 22 322 77 HOH HOH . 
O 7 HOH A 23 323 94 HOH HOH . 
O 7 HOH A 24 324 50 HOH HOH . 
O 7 HOH A 25 325 90 HOH HOH . 
O 7 HOH A 26 326 144 HOH HOH . 
O 7 HOH A 27 327 66 HOH HOH . 
O 7 HOH A 28 328 59 HOH HOH . 
O 7 HOH A 29 329 84 HOH HOH . 
O 7 HOH A 30 330 62 HOH HOH . 
O 7 HOH A 31 331 10 HOH HOH . 
O 7 HOH A 32 332 48 HOH HOH . 
O 7 HOH A 33 333 40 HOH HOH . 
O 7 HOH A 34 334 6 HOH HOH . 
O 7 HOH A 35 335 83 HOH HOH . 
O 7 HOH A 36 336 73 HOH HOH . 
O 7 HOH A 37 337 75 HOH HOH . 
O 7 HOH A 38 338 20 HOH HOH . 
O 7 HOH A 39 339 79 HOH HOH . 
O 7 HOH A 40 340 101 HOH HOH . 
O 7 HOH A 41 341 64 HOH HOH . 
O 7 HOH A 42 342 24 HOH HOH . 
O 7 HOH A 43 343 44 HOH HOH . 
O 7 HOH A 44 344 114 HOH HOH . 
O 7 HOH A 45 345 93 HOH HOH . 
O 7 HOH A 46 346 54 HOH HOH . 
O 7 HOH A 47 347 71 HOH HOH . 
O 7 HOH A 48 348 121 HOH HOH . 
O 7 HOH A 49 349 8 HOH HOH . 
O 7 HOH A 50 350 65 HOH HOH . 
O 7 HOH A 51 351 105 HOH HOH . 
O 7 HOH A 52 352 106 HOH HOH . 
O 7 HOH A 53 353 183 HOH HOH . 
O 7 HOH A 54 354 60 HOH HOH . 
O 7 HOH A 55 355 46 HOH HOH . 
O 7 HOH A 56 356 11 HOH HOH . 
O 7 HOH A 57 357 5 HOH HOH . 
O 7 HOH A 58 358 51 HOH HOH . 
O 7 HOH A 59 359 98 HOH HOH . 
O 7 HOH A 60 360 164 HOH HOH . 
O 7 HOH A 61 361 22 HOH HOH . 
O 7 HOH A 62 362 56 HOH HOH . 
O 7 HOH A 63 363 31 HOH HOH . 
O 7 HOH A 64 364 49 HOH HOH . 
O 7 HOH A 65 365 108 HOH HOH . 
O 7 HOH A 66 366 69 HOH HOH . 
O 7 HOH A 67 367 67 HOH HOH . 
O 7 HOH A 68 368 28 HOH HOH . 
O 7 HOH A 69 369 126 HOH HOH . 
O 7 HOH A 70 370 139 HOH HOH . 
O 7 HOH A 71 371 58 HOH HOH . 
O 7 HOH A 72 372 35 HOH HOH . 
O 7 HOH A 73 373 4 HOH HOH . 
O 7 HOH A 74 374 15 HOH HOH . 
O 7 HOH A 75 375 107 HOH HOH . 
O 7 HOH A 76 376 102 HOH HOH . 
O 7 HOH A 77 377 9 HOH HOH . 
O 7 HOH A 78 378 78 HOH HOH . 
O 7 HOH A 79 379 6 HOH HOH . 
O 7 HOH A 80 380 53 HOH HOH . 
O 7 HOH A 81 381 55 HOH HOH . 
O 7 HOH A 82 382 124 HOH HOH . 
O 7 HOH A 83 383 6 HOH HOH . 
O 7 HOH A 84 384 4 HOH HOH . 
O 7 HOH A 85 385 29 HOH HOH . 
O 7 HOH A 86 386 25 HOH HOH . 
O 7 HOH A 87 387 81 HOH HOH . 
O 7 HOH A 88 388 111 HOH HOH . 
O 7 HOH A 89 389 4 HOH HOH . 
O 7 HOH A 90 390 57 HOH HOH . 
O 7 HOH A 91 391 103 HOH HOH . 
O 7 HOH A 92 392 173 HOH HOH . 
O 7 HOH A 93 393 5 HOH HOH . 
O 7 HOH A 94 394 7 HOH HOH . 
O 7 HOH A 95 395 163 HOH HOH . 
O 7 HOH A 96 396 89 HOH HOH . 
O 7 HOH A 97 397 167 HOH HOH . 
O 7 HOH A 98 398 135 HOH HOH . 
O 7 HOH A 99 399 5 HOH HOH . 
O 7 HOH A 100 400 6 HOH HOH . 
O 7 HOH A 101 401 7 HOH HOH . 
O 7 HOH A 102 402 120 HOH HOH . 
O 7 HOH A 103 403 7 HOH HOH . 
O 7 HOH A 104 404 23 HOH HOH . 
O 7 HOH A 105 405 95 HOH HOH . 
O 7 HOH A 106 406 122 HOH HOH . 
O 7 HOH A 107 407 118 HOH HOH . 
O 7 HOH A 108 408 39 HOH HOH . 
O 7 HOH A 109 409 123 HOH HOH . 
O 7 HOH A 110 410 74 HOH HOH . 
O 7 HOH A 111 411 109 HOH HOH . 
O 7 HOH A 112 412 146 HOH HOH . 
O 7 HOH A 113 413 140 HOH HOH . 
O 7 HOH A 114 414 130 HOH HOH . 
O 7 HOH A 115 415 104 HOH HOH . 
O 7 HOH A 116 416 76 HOH HOH . 
O 7 HOH A 117 417 143 HOH HOH . 
O 7 HOH A 118 418 110 HOH HOH . 
O 7 HOH A 119 419 68 HOH HOH . 
O 7 HOH A 120 420 156 HOH HOH . 
O 7 HOH A 121 421 182 HOH HOH . 
O 7 HOH A 122 422 181 HOH HOH . 
O 7 HOH A 123 423 82 HOH HOH . 
O 7 HOH A 124 424 159 HOH HOH . 
O 7 HOH A 125 425 86 HOH HOH . 
O 7 HOH A 126 426 117 HOH HOH . 
O 7 HOH A 127 427 175 HOH HOH . 
O 7 HOH A 128 428 97 HOH HOH . 
O 7 HOH A 129 429 30 HOH HOH . 
O 7 HOH A 130 430 2 HOH HOH . 
O 7 HOH A 131 431 141 HOH HOH . 
O 7 HOH A 132 432 185 HOH HOH . 
O 7 HOH A 133 433 80 HOH HOH . 
O 7 HOH A 134 434 180 HOH HOH . 
O 7 HOH A 135 435 152 HOH HOH . 
O 7 HOH A 136 436 131 HOH HOH . 
O 7 HOH A 137 437 142 HOH HOH . 
O 7 HOH A 138 438 2 HOH HOH . 
O 7 HOH A 139 439 158 HOH HOH . 
O 7 HOH A 140 440 2 HOH HOH . 
O 7 HOH A 141 441 113 HOH HOH . 
O 7 HOH A 142 442 116 HOH HOH . 
O 7 HOH A 143 443 145 HOH HOH . 
O 7 HOH A 144 444 171 HOH HOH . 
O 7 HOH A 145 445 148 HOH HOH . 
O 7 HOH A 146 446 115 HOH HOH . 
O 7 HOH A 147 447 155 HOH HOH . 
O 7 HOH A 148 448 52 HOH HOH . 
O 7 HOH A 149 449 119 HOH HOH . 
O 7 HOH A 150 450 153 HOH HOH . 
O 7 HOH A 151 451 149 HOH HOH . 
O 7 HOH A 152 452 129 HOH HOH . 
O 7 HOH A 153 453 43 HOH HOH . 
O 7 HOH A 154 454 96 HOH HOH . 
O 7 HOH A 155 455 186 HOH HOH . 
O 7 HOH A 156 456 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . G 4 2.142 20.708 3.592 0.82 32.92 ? N1 IMD 206 A 1 
HETATM 2 C C2 IMD . . . G 4 1.954 20.337 4.878 0.82 32.17 ? C2 IMD 206 A 1 
HETATM 3 N N3 IMD . . . G 4 2.94 19.487 5.24 0.82 30.96 ? N3 IMD 206 A 1 
HETATM 4 C C4 IMD . . . G 4 3.762 19.324 4.182 0.82 32.24 ? C4 IMD 206 A 1 
HETATM 5 C C5 IMD . . . G 4 3.258 20.096 3.143 0.82 32.86 ? C5 IMD 206 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#