data_7BD3 # _model_server_result.job_id rYQimjhOyaDefLY_iW-i4Q _model_server_result.datetime_utc '2024-11-22 18:06:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 7BD3 # _exptl.entry_id 7BD3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.225 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-methoxy-6-phenyl-pyrimidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BD3 _cell.length_a 60.714 _cell.length_b 72.665 _cell.length_c 79.108 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C11 H11 N3 O' _chem_comp.formula_weight 201.225 _chem_comp.id TE5 _chem_comp.mon_nstd_flag . _chem_comp.name 4-methoxy-6-phenyl-pyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-methoxy-6-phenylpyrimidin-2-ylamine;4-methoxy-6-phenylpyrimidin-2-amine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N09 C07 TE5 sing 324 n n C07 N06 TE5 doub 325 n y C07 N08 TE5 sing 326 n y N06 C05 TE5 sing 327 n y N08 C03 TE5 doub 328 n y C15 C14 TE5 doub 329 n y C15 C10 TE5 sing 330 n y C14 C13 TE5 sing 331 n y C05 C10 TE5 sing 332 n n C05 C04 TE5 doub 333 n y C10 C11 TE5 doub 334 n y C01 O02 TE5 sing 335 n n C03 C04 TE5 sing 336 n y C03 O02 TE5 sing 337 n n C13 C12 TE5 doub 338 n y C11 C12 TE5 sing 339 n y C13 H1 TE5 sing 340 n n C15 H2 TE5 sing 341 n n C01 H3 TE5 sing 342 n n C01 H4 TE5 sing 343 n n C01 H5 TE5 sing 344 n n C04 H6 TE5 sing 345 n n C11 H7 TE5 sing 346 n n C12 H8 TE5 sing 347 n n C14 H9 TE5 sing 348 n n N09 H10 TE5 sing 349 n n N09 H11 TE5 sing 350 n n # _atom_sites.entry_id 7BD3 _atom_sites.fract_transf_matrix[1][1] 0.016471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 2 SO4 A 1 503 1 SO4 SO4 . E 2 SO4 A 1 504 8 SO4 SO4 . F 2 SO4 A 1 505 9 SO4 SO4 . G 2 SO4 A 1 506 10 SO4 SO4 . H 4 TE5 A 1 507 1 TE5 LIG . I 5 HOH A 1 601 1035 HOH HOH . I 5 HOH A 2 602 1118 HOH HOH . I 5 HOH A 3 603 1047 HOH HOH . I 5 HOH A 4 604 31 HOH HOH . I 5 HOH A 5 605 1016 HOH HOH . I 5 HOH A 6 606 1050 HOH HOH . I 5 HOH A 7 607 22 HOH HOH . I 5 HOH A 8 608 1046 HOH HOH . I 5 HOH A 9 609 1048 HOH HOH . I 5 HOH A 10 610 12 HOH HOH . I 5 HOH A 11 611 1036 HOH HOH . I 5 HOH A 12 612 27 HOH HOH . I 5 HOH A 13 613 1029 HOH HOH . I 5 HOH A 14 614 1196 HOH HOH . I 5 HOH A 15 615 1064 HOH HOH . I 5 HOH A 16 616 1148 HOH HOH . I 5 HOH A 17 617 17 HOH HOH . I 5 HOH A 18 618 1007 HOH HOH . I 5 HOH A 19 619 1003 HOH HOH . I 5 HOH A 20 620 1058 HOH HOH . I 5 HOH A 21 621 1063 HOH HOH . I 5 HOH A 22 622 1004 HOH HOH . I 5 HOH A 23 623 1043 HOH HOH . I 5 HOH A 24 624 1018 HOH HOH . I 5 HOH A 25 625 1082 HOH HOH . I 5 HOH A 26 626 1027 HOH HOH . I 5 HOH A 27 627 1052 HOH HOH . I 5 HOH A 28 628 1019 HOH HOH . I 5 HOH A 29 629 1070 HOH HOH . I 5 HOH A 30 630 1071 HOH HOH . I 5 HOH A 31 631 18 HOH HOH . I 5 HOH A 32 632 23 HOH HOH . I 5 HOH A 33 633 1065 HOH HOH . I 5 HOH A 34 634 1001 HOH HOH . I 5 HOH A 35 635 1073 HOH HOH . I 5 HOH A 36 636 1045 HOH HOH . I 5 HOH A 37 637 11 HOH HOH . I 5 HOH A 38 638 1023 HOH HOH . I 5 HOH A 39 639 1031 HOH HOH . I 5 HOH A 40 640 25 HOH HOH . I 5 HOH A 41 641 1067 HOH HOH . I 5 HOH A 42 642 1030 HOH HOH . I 5 HOH A 43 643 1020 HOH HOH . I 5 HOH A 44 644 1012 HOH HOH . I 5 HOH A 45 645 1169 HOH HOH . I 5 HOH A 46 646 1033 HOH HOH . I 5 HOH A 47 647 4 HOH HOH . I 5 HOH A 48 648 1190 HOH HOH . I 5 HOH A 49 649 1037 HOH HOH . I 5 HOH A 50 650 57 HOH HOH . I 5 HOH A 51 651 1051 HOH HOH . I 5 HOH A 52 652 34 HOH HOH . I 5 HOH A 53 653 1002 HOH HOH . I 5 HOH A 54 654 1041 HOH HOH . I 5 HOH A 55 655 1098 HOH HOH . I 5 HOH A 56 656 1115 HOH HOH . I 5 HOH A 57 657 1091 HOH HOH . I 5 HOH A 58 658 1145 HOH HOH . I 5 HOH A 59 659 1040 HOH HOH . I 5 HOH A 60 660 48 HOH HOH . I 5 HOH A 61 661 1197 HOH HOH . I 5 HOH A 62 662 1049 HOH HOH . I 5 HOH A 63 663 1068 HOH HOH . I 5 HOH A 64 664 21 HOH HOH . I 5 HOH A 65 665 36 HOH HOH . I 5 HOH A 66 666 1149 HOH HOH . I 5 HOH A 67 667 1015 HOH HOH . I 5 HOH A 68 668 1039 HOH HOH . I 5 HOH A 69 669 1142 HOH HOH . I 5 HOH A 70 670 1005 HOH HOH . I 5 HOH A 71 671 56 HOH HOH . I 5 HOH A 72 672 1038 HOH HOH . I 5 HOH A 73 673 1006 HOH HOH . I 5 HOH A 74 674 1014 HOH HOH . I 5 HOH A 75 675 1017 HOH HOH . I 5 HOH A 76 676 1013 HOH HOH . I 5 HOH A 77 677 1114 HOH HOH . I 5 HOH A 78 678 1011 HOH HOH . I 5 HOH A 79 679 29 HOH HOH . I 5 HOH A 80 680 1077 HOH HOH . I 5 HOH A 81 681 1042 HOH HOH . I 5 HOH A 82 682 7 HOH HOH . I 5 HOH A 83 683 1026 HOH HOH . I 5 HOH A 84 684 1078 HOH HOH . I 5 HOH A 85 685 1080 HOH HOH . I 5 HOH A 86 686 1010 HOH HOH . I 5 HOH A 87 687 20 HOH HOH . I 5 HOH A 88 688 1079 HOH HOH . I 5 HOH A 89 689 1074 HOH HOH . I 5 HOH A 90 690 1057 HOH HOH . I 5 HOH A 91 691 1066 HOH HOH . I 5 HOH A 92 692 14 HOH HOH . I 5 HOH A 93 693 47 HOH HOH . I 5 HOH A 94 694 1166 HOH HOH . I 5 HOH A 95 695 1112 HOH HOH . I 5 HOH A 96 696 1153 HOH HOH . I 5 HOH A 97 697 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 TE5 . . . H 4 0.706 -5.541 5.724 1 61.2 ? C10 TE5 507 A 1 HETATM 2 C C13 TE5 . . . H 4 -1.822 -6.586 5.937 1 68.59 ? C13 TE5 507 A 1 HETATM 3 C C15 TE5 . . . H 4 -0.125 -5.614 4.616 1 54.64 ? C15 TE5 507 A 1 HETATM 4 C C01 TE5 . . . H 4 6.554 -3.78 5.83 1 53.15 ? C01 TE5 507 A 1 HETATM 5 C C03 TE5 . . . H 4 4.271 -4.231 5.834 1 59.68 ? C03 TE5 507 A 1 HETATM 6 C C04 TE5 . . . H 4 3.056 -4.787 6.389 1 59.62 ? C04 TE5 507 A 1 HETATM 7 C C05 TE5 . . . H 4 1.979 -5.005 5.476 1 59.85 ? C05 TE5 507 A 1 HETATM 8 C C07 TE5 . . . H 4 3.261 -4.188 3.713 1 59.39 ? C07 TE5 507 A 1 HETATM 9 C C11 TE5 . . . H 4 0.284 -6.001 6.949 1 70.32 ? C11 TE5 507 A 1 HETATM 10 C C12 TE5 . . . H 4 -0.992 -6.516 7.041 1 67.33 ? C12 TE5 507 A 1 HETATM 11 C C14 TE5 . . . H 4 -1.386 -6.131 4.705 1 54.04 ? C14 TE5 507 A 1 HETATM 12 N N06 TE5 . . . H 4 2.122 -4.706 4.197 1 57.01 ? N06 TE5 507 A 1 HETATM 13 N N08 TE5 . . . H 4 4.328 -3.965 4.522 1 62.98 ? N08 TE5 507 A 1 HETATM 14 N N09 TE5 . . . H 4 3.283 -3.925 2.266 1 58.76 ? N09 TE5 507 A 1 HETATM 15 O O02 TE5 . . . H 4 5.416 -3.957 6.586 1 70.67 ? O02 TE5 507 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #