data_7BD4
#
_model_server_result.job_id            UF29hVvto5mCYu495YuP4Q 
_model_server_result.datetime_utc      '2024-11-26 17:51:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bd4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    7BD4 
#
_exptl.entry_id    7BD4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BD4 
_cell.length_a            60.47 
_cell.length_b            72.42 
_cell.length_c            78.38 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BD4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf8 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 269 n n 
C1 O1 NAG sing 270 n n 
C1 O5 NAG sing 271 n n 
C1 H1 NAG sing 272 n n 
C2 C3 NAG sing 273 n n 
C2 N2 NAG sing 274 n n 
C2 H2 NAG sing 275 n n 
C3 C4 NAG sing 276 n n 
C3 O3 NAG sing 277 n n 
C3 H3 NAG sing 278 n n 
C4 C5 NAG sing 279 n n 
C4 O4 NAG sing 280 n n 
C4 H4 NAG sing 281 n n 
C5 C6 NAG sing 282 n n 
C5 O5 NAG sing 283 n n 
C5 H5 NAG sing 284 n n 
C6 O6 NAG sing 285 n n 
C6 H61 NAG sing 286 n n 
C6 H62 NAG sing 287 n n 
C7 C8 NAG sing 288 n n 
C7 N2 NAG sing 289 n n 
C7 O7 NAG doub 290 n n 
C8 H81 NAG sing 291 n n 
C8 H82 NAG sing 292 n n 
C8 H83 NAG sing 293 n n 
N2 HN2 NAG sing 294 n n 
O1 HO1 NAG sing 295 n n 
O3 HO3 NAG sing 296 n n 
O4 HO4 NAG sing 297 n n 
O6 HO6 NAG sing 298 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7BD4 
_atom_sites.fract_transf_matrix[1][1]    0.016537 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013808 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012758 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 501 602 SO4 SO4 . 
C 3 NAG A 1 502 1452 NAG NAG . 
D 2 SO4 A 1 503 8 SO4 SO4 . 
E 2 SO4 A 1 504 9 SO4 SO4 . 
F 2 SO4 A 1 505 10 SO4 SO4 . 
G 4 JHJ A 1 506 1 JHJ LIG . 
H 5 HOH A 1 601 1118 HOH HOH . 
H 5 HOH A 2 602 32 HOH HOH . 
H 5 HOH A 3 603 25 HOH HOH . 
H 5 HOH A 4 604 55 HOH HOH . 
H 5 HOH A 5 605 37 HOH HOH . 
H 5 HOH A 6 606 22 HOH HOH . 
H 5 HOH A 7 607 1075 HOH HOH . 
H 5 HOH A 8 608 1047 HOH HOH . 
H 5 HOH A 9 609 1051 HOH HOH . 
H 5 HOH A 10 610 1027 HOH HOH . 
H 5 HOH A 11 611 1031 HOH HOH . 
H 5 HOH A 12 612 1048 HOH HOH . 
H 5 HOH A 13 613 1097 HOH HOH . 
H 5 HOH A 14 614 1003 HOH HOH . 
H 5 HOH A 15 615 27 HOH HOH . 
H 5 HOH A 16 616 1190 HOH HOH . 
H 5 HOH A 17 617 57 HOH HOH . 
H 5 HOH A 18 618 1133 HOH HOH . 
H 5 HOH A 19 619 1045 HOH HOH . 
H 5 HOH A 20 620 1074 HOH HOH . 
H 5 HOH A 21 621 1004 HOH HOH . 
H 5 HOH A 22 622 1036 HOH HOH . 
H 5 HOH A 23 623 1123 HOH HOH . 
H 5 HOH A 24 624 1052 HOH HOH . 
H 5 HOH A 25 625 50 HOH HOH . 
H 5 HOH A 26 626 1057 HOH HOH . 
H 5 HOH A 27 627 56 HOH HOH . 
H 5 HOH A 28 628 1073 HOH HOH . 
H 5 HOH A 29 629 1007 HOH HOH . 
H 5 HOH A 30 630 1062 HOH HOH . 
H 5 HOH A 31 631 1001 HOH HOH . 
H 5 HOH A 32 632 1018 HOH HOH . 
H 5 HOH A 33 633 1125 HOH HOH . 
H 5 HOH A 34 634 1070 HOH HOH . 
H 5 HOH A 35 635 1064 HOH HOH . 
H 5 HOH A 36 636 21 HOH HOH . 
H 5 HOH A 37 637 1197 HOH HOH . 
H 5 HOH A 38 638 1037 HOH HOH . 
H 5 HOH A 39 639 1041 HOH HOH . 
H 5 HOH A 40 640 36 HOH HOH . 
H 5 HOH A 41 641 1023 HOH HOH . 
H 5 HOH A 42 642 1019 HOH HOH . 
H 5 HOH A 43 643 1012 HOH HOH . 
H 5 HOH A 44 644 1050 HOH HOH . 
H 5 HOH A 45 645 1016 HOH HOH . 
H 5 HOH A 46 646 1068 HOH HOH . 
H 5 HOH A 47 647 1196 HOH HOH . 
H 5 HOH A 48 648 1043 HOH HOH . 
H 5 HOH A 49 649 1008 HOH HOH . 
H 5 HOH A 50 650 1040 HOH HOH . 
H 5 HOH A 51 651 1059 HOH HOH . 
H 5 HOH A 52 652 28 HOH HOH . 
H 5 HOH A 53 653 26 HOH HOH . 
H 5 HOH A 54 654 1124 HOH HOH . 
H 5 HOH A 55 655 1058 HOH HOH . 
H 5 HOH A 56 656 1020 HOH HOH . 
H 5 HOH A 57 657 1085 HOH HOH . 
H 5 HOH A 58 658 20 HOH HOH . 
H 5 HOH A 59 659 1054 HOH HOH . 
H 5 HOH A 60 660 1114 HOH HOH . 
H 5 HOH A 61 661 1006 HOH HOH . 
H 5 HOH A 62 662 34 HOH HOH . 
H 5 HOH A 63 663 1091 HOH HOH . 
H 5 HOH A 64 664 1077 HOH HOH . 
H 5 HOH A 65 665 1142 HOH HOH . 
H 5 HOH A 66 666 30 HOH HOH . 
H 5 HOH A 67 667 1030 HOH HOH . 
H 5 HOH A 68 668 1005 HOH HOH . 
H 5 HOH A 69 669 43 HOH HOH . 
H 5 HOH A 70 670 1063 HOH HOH . 
H 5 HOH A 71 671 7 HOH HOH . 
H 5 HOH A 72 672 1002 HOH HOH . 
H 5 HOH A 73 673 1065 HOH HOH . 
H 5 HOH A 74 674 12 HOH HOH . 
H 5 HOH A 75 675 1086 HOH HOH . 
H 5 HOH A 76 676 14 HOH HOH . 
H 5 HOH A 77 677 1011 HOH HOH . 
H 5 HOH A 78 678 1038 HOH HOH . 
H 5 HOH A 79 679 1026 HOH HOH . 
H 5 HOH A 80 680 16 HOH HOH . 
H 5 HOH A 81 681 11 HOH HOH . 
H 5 HOH A 82 682 1078 HOH HOH . 
H 5 HOH A 83 683 1109 HOH HOH . 
H 5 HOH A 84 684 39 HOH HOH . 
H 5 HOH A 85 685 1035 HOH HOH . 
H 5 HOH A 86 686 1039 HOH HOH . 
H 5 HOH A 87 687 1029 HOH HOH . 
H 5 HOH A 88 688 1180 HOH HOH . 
H 5 HOH A 89 689 15 HOH HOH . 
H 5 HOH A 90 690 1014 HOH HOH . 
H 5 HOH A 91 691 1015 HOH HOH . 
H 5 HOH A 92 692 1049 HOH HOH . 
H 5 HOH A 93 693 1150 HOH HOH . 
H 5 HOH A 94 694 23 HOH HOH . 
H 5 HOH A 95 695 1042 HOH HOH . 
H 5 HOH A 96 696 1013 HOH HOH . 
H 5 HOH A 97 697 1115 HOH HOH . 
H 5 HOH A 98 698 48 HOH HOH . 
H 5 HOH A 99 699 1017 HOH HOH . 
H 5 HOH A 100 700 1199 HOH HOH . 
H 5 HOH A 101 701 4 HOH HOH . 
H 5 HOH A 102 702 1080 HOH HOH . 
H 5 HOH A 103 703 29 HOH HOH . 
H 5 HOH A 104 704 1092 HOH HOH . 
H 5 HOH A 105 705 35 HOH HOH . 
H 5 HOH A 106 706 1081 HOH HOH . 
H 5 HOH A 107 707 19 HOH HOH . 
H 5 HOH A 108 708 47 HOH HOH . 
H 5 HOH A 109 709 51 HOH HOH . 
H 5 HOH A 110 710 1162 HOH HOH . 
H 5 HOH A 111 711 42 HOH HOH . 
H 5 HOH A 112 712 1152 HOH HOH . 
H 5 HOH A 113 713 1153 HOH HOH . 
H 5 HOH A 114 714 33 HOH HOH . 
H 5 HOH A 115 715 1112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -4.144 21.38 -0.824 1 33.95 ? C1 NAG 502 A 1 
HETATM 2 C C2 NAG . . . C 3 -5.159 22.114 -1.71 1 32.61 ? C2 NAG 502 A 1 
HETATM 3 C C3 NAG . . . C 3 -6.576 21.94 -1.164 1 44.45 ? C3 NAG 502 A 1 
HETATM 4 C C4 NAG . . . C 3 -6.894 20.468 -0.942 1 49.73 ? C4 NAG 502 A 1 
HETATM 5 C C5 NAG . . . C 3 -5.827 19.839 -0.055 1 39.04 ? C5 NAG 502 A 1 
HETATM 6 C C6 NAG . . . C 3 -6.022 18.354 0.146 1 55.97 ? C6 NAG 502 A 1 
HETATM 7 C C7 NAG . . . C 3 -4.609 24.143 -2.981 1 73.17 ? C7 NAG 502 A 1 
HETATM 8 C C8 NAG . . . C 3 -4.279 25.603 -2.899 1 55.26 ? C8 NAG 502 A 1 
HETATM 9 N N2 NAG . . . C 3 -4.826 23.525 -1.816 1 43.56 ? N2 NAG 502 A 1 
HETATM 10 O O3 NAG . . . C 3 -7.506 22.501 -2.084 1 45.71 ? O3 NAG 502 A 1 
HETATM 11 O O4 NAG . . . C 3 -8.166 20.33 -0.321 1 42.87 ? O4 NAG 502 A 1 
HETATM 12 O O5 NAG . . . C 3 -4.541 20.01 -0.664 1 36.74 ? O5 NAG 502 A 1 
HETATM 13 O O6 NAG . . . C 3 -5.955 17.648 -1.085 1 42.17 ? O6 NAG 502 A 1 
HETATM 14 O O7 NAG . . . C 3 -4.674 23.55 -4.054 1 60.91 ? O7 NAG 502 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#