data_7BD6 # _model_server_result.job_id 1vZLhcmzTtSmZvrjfQQ_DQ _model_server_result.datetime_utc '2024-11-26 02:52:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bd6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7BD6 # _exptl.entry_id 7BD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BD6 _cell.length_a 60.55 _cell.length_b 72.74 _cell.length_c 78.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 272 n n C1 O1 NAG sing 273 n n C1 O5 NAG sing 274 n n C1 H1 NAG sing 275 n n C2 C3 NAG sing 276 n n C2 N2 NAG sing 277 n n C2 H2 NAG sing 278 n n C3 C4 NAG sing 279 n n C3 O3 NAG sing 280 n n C3 H3 NAG sing 281 n n C4 C5 NAG sing 282 n n C4 O4 NAG sing 283 n n C4 H4 NAG sing 284 n n C5 C6 NAG sing 285 n n C5 O5 NAG sing 286 n n C5 H5 NAG sing 287 n n C6 O6 NAG sing 288 n n C6 H61 NAG sing 289 n n C6 H62 NAG sing 290 n n C7 C8 NAG sing 291 n n C7 N2 NAG sing 292 n n C7 O7 NAG doub 293 n n C8 H81 NAG sing 294 n n C8 H82 NAG sing 295 n n C8 H83 NAG sing 296 n n N2 HN2 NAG sing 297 n n O1 HO1 NAG sing 298 n n O3 HO3 NAG sing 299 n n O4 HO4 NAG sing 300 n n O6 HO6 NAG sing 301 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7BD6 _atom_sites.fract_transf_matrix[1][1] 0.016515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 DMS A 1 503 1501 DMS DMS . E 4 DMS A 1 504 1601 DMS DMS . F 4 DMS A 1 505 1701 DMS DMS . G 2 SO4 A 1 506 8 SO4 SO4 . H 2 SO4 A 1 507 10 SO4 SO4 . I 5 JH7 A 1 508 1 JH7 LIG . J 6 HOH A 1 601 99 HOH HOH . J 6 HOH A 2 602 43 HOH HOH . J 6 HOH A 3 603 89 HOH HOH . J 6 HOH A 4 604 19 HOH HOH . J 6 HOH A 5 605 51 HOH HOH . J 6 HOH A 6 606 1086 HOH HOH . J 6 HOH A 7 607 1050 HOH HOH . J 6 HOH A 8 608 54 HOH HOH . J 6 HOH A 9 609 92 HOH HOH . J 6 HOH A 10 610 1047 HOH HOH . J 6 HOH A 11 611 27 HOH HOH . J 6 HOH A 12 612 1082 HOH HOH . J 6 HOH A 13 613 84 HOH HOH . J 6 HOH A 14 614 1118 HOH HOH . J 6 HOH A 15 615 1031 HOH HOH . J 6 HOH A 16 616 1001 HOH HOH . J 6 HOH A 17 617 1045 HOH HOH . J 6 HOH A 18 618 1018 HOH HOH . J 6 HOH A 19 619 17 HOH HOH . J 6 HOH A 20 620 36 HOH HOH . J 6 HOH A 21 621 1196 HOH HOH . J 6 HOH A 22 622 71 HOH HOH . J 6 HOH A 23 623 57 HOH HOH . J 6 HOH A 24 624 1048 HOH HOH . J 6 HOH A 25 625 85 HOH HOH . J 6 HOH A 26 626 80 HOH HOH . J 6 HOH A 27 627 1004 HOH HOH . J 6 HOH A 28 628 1040 HOH HOH . J 6 HOH A 29 629 1029 HOH HOH . J 6 HOH A 30 630 1016 HOH HOH . J 6 HOH A 31 631 1149 HOH HOH . J 6 HOH A 32 632 25 HOH HOH . J 6 HOH A 33 633 1046 HOH HOH . J 6 HOH A 34 634 1019 HOH HOH . J 6 HOH A 35 635 22 HOH HOH . J 6 HOH A 36 636 1068 HOH HOH . J 6 HOH A 37 637 23 HOH HOH . J 6 HOH A 38 638 64 HOH HOH . J 6 HOH A 39 639 1027 HOH HOH . J 6 HOH A 40 640 1007 HOH HOH . J 6 HOH A 41 641 1043 HOH HOH . J 6 HOH A 42 642 77 HOH HOH . J 6 HOH A 43 643 62 HOH HOH . J 6 HOH A 44 644 100 HOH HOH . J 6 HOH A 45 645 1036 HOH HOH . J 6 HOH A 46 646 1123 HOH HOH . J 6 HOH A 47 647 1190 HOH HOH . J 6 HOH A 48 648 1012 HOH HOH . J 6 HOH A 49 649 1197 HOH HOH . J 6 HOH A 50 650 1091 HOH HOH . J 6 HOH A 51 651 1015 HOH HOH . J 6 HOH A 52 652 72 HOH HOH . J 6 HOH A 53 653 1059 HOH HOH . J 6 HOH A 54 654 1051 HOH HOH . J 6 HOH A 55 655 1003 HOH HOH . J 6 HOH A 56 656 70 HOH HOH . J 6 HOH A 57 657 1062 HOH HOH . J 6 HOH A 58 658 1054 HOH HOH . J 6 HOH A 59 659 1120 HOH HOH . J 6 HOH A 60 660 56 HOH HOH . J 6 HOH A 61 661 1071 HOH HOH . J 6 HOH A 62 662 1065 HOH HOH . J 6 HOH A 63 663 1077 HOH HOH . J 6 HOH A 64 664 95 HOH HOH . J 6 HOH A 65 665 1038 HOH HOH . J 6 HOH A 66 666 12 HOH HOH . J 6 HOH A 67 667 88 HOH HOH . J 6 HOH A 68 668 1073 HOH HOH . J 6 HOH A 69 669 1037 HOH HOH . J 6 HOH A 70 670 73 HOH HOH . J 6 HOH A 71 671 1109 HOH HOH . J 6 HOH A 72 672 1008 HOH HOH . J 6 HOH A 73 673 1002 HOH HOH . J 6 HOH A 74 674 1058 HOH HOH . J 6 HOH A 75 675 20 HOH HOH . J 6 HOH A 76 676 18 HOH HOH . J 6 HOH A 77 677 1081 HOH HOH . J 6 HOH A 78 678 87 HOH HOH . J 6 HOH A 79 679 1052 HOH HOH . J 6 HOH A 80 680 1169 HOH HOH . J 6 HOH A 81 681 1145 HOH HOH . J 6 HOH A 82 682 1023 HOH HOH . J 6 HOH A 83 683 1148 HOH HOH . J 6 HOH A 84 684 1005 HOH HOH . J 6 HOH A 85 685 66 HOH HOH . J 6 HOH A 86 686 1098 HOH HOH . J 6 HOH A 87 687 11 HOH HOH . J 6 HOH A 88 688 1067 HOH HOH . J 6 HOH A 89 689 1011 HOH HOH . J 6 HOH A 90 690 1014 HOH HOH . J 6 HOH A 91 691 1114 HOH HOH . J 6 HOH A 92 692 1039 HOH HOH . J 6 HOH A 93 693 1006 HOH HOH . J 6 HOH A 94 694 15 HOH HOH . J 6 HOH A 95 695 30 HOH HOH . J 6 HOH A 96 696 83 HOH HOH . J 6 HOH A 97 697 4 HOH HOH . J 6 HOH A 98 698 1017 HOH HOH . J 6 HOH A 99 699 1078 HOH HOH . J 6 HOH A 100 700 1013 HOH HOH . J 6 HOH A 101 701 1057 HOH HOH . J 6 HOH A 102 702 96 HOH HOH . J 6 HOH A 103 703 1030 HOH HOH . J 6 HOH A 104 704 61 HOH HOH . J 6 HOH A 105 705 13 HOH HOH . J 6 HOH A 106 706 14 HOH HOH . J 6 HOH A 107 707 79 HOH HOH . J 6 HOH A 108 708 1097 HOH HOH . J 6 HOH A 109 709 76 HOH HOH . J 6 HOH A 110 710 82 HOH HOH . J 6 HOH A 111 711 1049 HOH HOH . J 6 HOH A 112 712 1124 HOH HOH . J 6 HOH A 113 713 1026 HOH HOH . J 6 HOH A 114 714 90 HOH HOH . J 6 HOH A 115 715 1041 HOH HOH . J 6 HOH A 116 716 48 HOH HOH . J 6 HOH A 117 717 1020 HOH HOH . J 6 HOH A 118 718 86 HOH HOH . J 6 HOH A 119 719 81 HOH HOH . J 6 HOH A 120 720 1063 HOH HOH . J 6 HOH A 121 721 1142 HOH HOH . J 6 HOH A 122 722 34 HOH HOH . J 6 HOH A 123 723 1125 HOH HOH . J 6 HOH A 124 724 1042 HOH HOH . J 6 HOH A 125 725 1035 HOH HOH . J 6 HOH A 126 726 74 HOH HOH . J 6 HOH A 127 727 1080 HOH HOH . J 6 HOH A 128 728 1074 HOH HOH . J 6 HOH A 129 729 67 HOH HOH . J 6 HOH A 130 730 93 HOH HOH . J 6 HOH A 131 731 1079 HOH HOH . J 6 HOH A 132 732 26 HOH HOH . J 6 HOH A 133 733 69 HOH HOH . J 6 HOH A 134 734 94 HOH HOH . J 6 HOH A 135 735 75 HOH HOH . J 6 HOH A 136 736 60 HOH HOH . J 6 HOH A 137 737 1092 HOH HOH . J 6 HOH A 138 738 29 HOH HOH . J 6 HOH A 139 739 1022 HOH HOH . J 6 HOH A 140 740 91 HOH HOH . J 6 HOH A 141 741 16 HOH HOH . J 6 HOH A 142 742 68 HOH HOH . J 6 HOH A 143 743 98 HOH HOH . J 6 HOH A 144 744 78 HOH HOH . J 6 HOH A 145 745 1180 HOH HOH . J 6 HOH A 146 746 1066 HOH HOH . J 6 HOH A 147 747 1129 HOH HOH . J 6 HOH A 148 748 5 HOH HOH . J 6 HOH A 149 749 1162 HOH HOH . J 6 HOH A 150 750 42 HOH HOH . J 6 HOH A 151 751 1152 HOH HOH . J 6 HOH A 152 752 1153 HOH HOH . J 6 HOH A 153 753 33 HOH HOH . J 6 HOH A 154 754 1112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 -4.231 21.219 -0.798 1 35.86 ? C1 NAG 502 A 1 HETATM 2 C C2 NAG . . . C 3 -5.276 21.782 -1.751 1 49.07 ? C2 NAG 502 A 1 HETATM 3 C C3 NAG . . . C 3 -6.688 21.54 -1.209 1 42.02 ? C3 NAG 502 A 1 HETATM 4 C C4 NAG . . . C 3 -6.894 20.078 -0.83 1 39.66 ? C4 NAG 502 A 1 HETATM 5 C C5 NAG . . . C 3 -5.771 19.594 0.084 1 38.14 ? C5 NAG 502 A 1 HETATM 6 C C6 NAG . . . C 3 -5.837 18.11 0.356 1 41.29 ? C6 NAG 502 A 1 HETATM 7 C C7 NAG . . . C 3 -4.631 23.701 -3.14 1 55.8 ? C7 NAG 502 A 1 HETATM 8 C C8 NAG . . . C 3 -4.457 25.19 -3.192 1 55.56 ? C8 NAG 502 A 1 HETATM 9 N N2 NAG . . . C 3 -5.054 23.202 -1.974 1 45.06 ? N2 NAG 502 A 1 HETATM 10 O O3 NAG . . . C 3 -7.613 21.909 -2.224 1 47.43 ? O3 NAG 502 A 1 HETATM 11 O O4 NAG . . . C 3 -8.146 19.897 -0.168 1 35.5 ? O4 NAG 502 A 1 HETATM 12 O O5 NAG . . . C 3 -4.504 19.837 -0.548 1 37.49 ? O5 NAG 502 A 1 HETATM 13 O O6 NAG . . . C 3 -5.939 17.376 -0.859 1 46.33 ? O6 NAG 502 A 1 HETATM 14 O O7 NAG . . . C 3 -4.398 22.982 -4.111 1 51.65 ? O7 NAG 502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #