data_7BD8
#
_model_server_result.job_id            YkL3iBEil39cwbPCacGHNQ 
_model_server_result.datetime_utc      '2024-11-17 00:27:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bd8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":509}' 
#
_entry.id    7BD8 
#
_exptl.entry_id    7BD8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              227.259 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2,5-dimethylphenyl) pyridine-4-carboxylate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BD8 
_cell.length_a            60.36 
_cell.length_b            73.23 
_cell.length_c            78.57 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BD8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C14 H13 N O2' 
_chem_comp.formula_weight    227.259 
_chem_comp.id                QL5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2,5-dimethylphenyl) pyridine-4-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C4 QL5 doub 316 n y 
C3 C2 QL5 sing 317 n y 
C4 C5 QL5 sing 318 n y 
C1 C2 QL5 sing 319 n n 
C2 C14 QL5 doub 320 n y 
C5 C6 QL5 sing 321 n n 
C5 C7 QL5 doub 322 n y 
C14 C7 QL5 sing 323 n y 
C7 O1 QL5 sing 324 n n 
O1 C8 QL5 sing 325 n n 
O2 C8 QL5 doub 326 n n 
C8 C9 QL5 sing 327 n n 
C9 C13 QL5 doub 328 n y 
C9 C10 QL5 sing 329 n y 
C13 C12 QL5 sing 330 n y 
C10 C11 QL5 doub 331 n y 
C12 N1 QL5 doub 332 n y 
C11 N1 QL5 sing 333 n y 
C4 H1 QL5 sing 334 n n 
C6 H2 QL5 sing 335 n n 
C6 H3 QL5 sing 336 n n 
C6 H4 QL5 sing 337 n n 
C10 H5 QL5 sing 338 n n 
C13 H6 QL5 sing 339 n n 
C1 H7 QL5 sing 340 n n 
C1 H8 QL5 sing 341 n n 
C1 H9 QL5 sing 342 n n 
C3 H10 QL5 sing 343 n n 
C11 H11 QL5 sing 344 n n 
C12 H12 QL5 sing 345 n n 
C14 H13 QL5 sing 346 n n 
#
_atom_sites.entry_id                     7BD8 
_atom_sites.fract_transf_matrix[1][1]    0.016567 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012728 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 501 602 SO4 SO4 . 
C 3 NAG A 1 502 1452 NAG NAG . 
D 4 DMS A 1 503 1501 DMS DMS . 
E 4 DMS A 1 504 1601 DMS DMS . 
F 4 DMS A 1 505 1701 DMS DMS . 
G 2 SO4 A 1 506 8 SO4 SO4 . 
H 2 SO4 A 1 507 9 SO4 SO4 . 
I 2 SO4 A 1 508 10 SO4 SO4 . 
J 5 QL5 A 1 509 1 QL5 LIG . 
K 6 HOH A 1 601 61 HOH HOH . 
K 6 HOH A 2 602 1118 HOH HOH . 
K 6 HOH A 3 603 32 HOH HOH . 
K 6 HOH A 4 604 43 HOH HOH . 
K 6 HOH A 5 605 1031 HOH HOH . 
K 6 HOH A 6 606 23 HOH HOH . 
K 6 HOH A 7 607 1123 HOH HOH . 
K 6 HOH A 8 608 1033 HOH HOH . 
K 6 HOH A 9 609 1082 HOH HOH . 
K 6 HOH A 10 610 1046 HOH HOH . 
K 6 HOH A 11 611 1070 HOH HOH . 
K 6 HOH A 12 612 1045 HOH HOH . 
K 6 HOH A 13 613 1086 HOH HOH . 
K 6 HOH A 14 614 1073 HOH HOH . 
K 6 HOH A 15 615 31 HOH HOH . 
K 6 HOH A 16 616 25 HOH HOH . 
K 6 HOH A 17 617 1003 HOH HOH . 
K 6 HOH A 18 618 1047 HOH HOH . 
K 6 HOH A 19 619 1050 HOH HOH . 
K 6 HOH A 20 620 1036 HOH HOH . 
K 6 HOH A 21 621 1149 HOH HOH . 
K 6 HOH A 22 622 1091 HOH HOH . 
K 6 HOH A 23 623 1001 HOH HOH . 
K 6 HOH A 24 624 36 HOH HOH . 
K 6 HOH A 25 625 1027 HOH HOH . 
K 6 HOH A 26 626 14 HOH HOH . 
K 6 HOH A 27 627 1057 HOH HOH . 
K 6 HOH A 28 628 1040 HOH HOH . 
K 6 HOH A 29 629 1197 HOH HOH . 
K 6 HOH A 30 630 1196 HOH HOH . 
K 6 HOH A 31 631 54 HOH HOH . 
K 6 HOH A 32 632 1016 HOH HOH . 
K 6 HOH A 33 633 1074 HOH HOH . 
K 6 HOH A 34 634 1008 HOH HOH . 
K 6 HOH A 35 635 60 HOH HOH . 
K 6 HOH A 36 636 1004 HOH HOH . 
K 6 HOH A 37 637 13 HOH HOH . 
K 6 HOH A 38 638 1048 HOH HOH . 
K 6 HOH A 39 639 1064 HOH HOH . 
K 6 HOH A 40 640 17 HOH HOH . 
K 6 HOH A 41 641 18 HOH HOH . 
K 6 HOH A 42 642 1059 HOH HOH . 
K 6 HOH A 43 643 1018 HOH HOH . 
K 6 HOH A 44 644 58 HOH HOH . 
K 6 HOH A 45 645 1051 HOH HOH . 
K 6 HOH A 46 646 1019 HOH HOH . 
K 6 HOH A 47 647 1029 HOH HOH . 
K 6 HOH A 48 648 1002 HOH HOH . 
K 6 HOH A 49 649 22 HOH HOH . 
K 6 HOH A 50 650 35 HOH HOH . 
K 6 HOH A 51 651 1054 HOH HOH . 
K 6 HOH A 52 652 7 HOH HOH . 
K 6 HOH A 53 653 1012 HOH HOH . 
K 6 HOH A 54 654 1058 HOH HOH . 
K 6 HOH A 55 655 12 HOH HOH . 
K 6 HOH A 56 656 1065 HOH HOH . 
K 6 HOH A 57 657 28 HOH HOH . 
K 6 HOH A 58 658 1114 HOH HOH . 
K 6 HOH A 59 659 1085 HOH HOH . 
K 6 HOH A 60 660 50 HOH HOH . 
K 6 HOH A 61 661 1190 HOH HOH . 
K 6 HOH A 62 662 65 HOH HOH . 
K 6 HOH A 63 663 1109 HOH HOH . 
K 6 HOH A 64 664 1142 HOH HOH . 
K 6 HOH A 65 665 57 HOH HOH . 
K 6 HOH A 66 666 40 HOH HOH . 
K 6 HOH A 67 667 1043 HOH HOH . 
K 6 HOH A 68 668 1007 HOH HOH . 
K 6 HOH A 69 669 1145 HOH HOH . 
K 6 HOH A 70 670 1011 HOH HOH . 
K 6 HOH A 71 671 11 HOH HOH . 
K 6 HOH A 72 672 1068 HOH HOH . 
K 6 HOH A 73 673 64 HOH HOH . 
K 6 HOH A 74 674 1052 HOH HOH . 
K 6 HOH A 75 675 1017 HOH HOH . 
K 6 HOH A 76 676 1020 HOH HOH . 
K 6 HOH A 77 677 1038 HOH HOH . 
K 6 HOH A 78 678 1133 HOH HOH . 
K 6 HOH A 79 679 62 HOH HOH . 
K 6 HOH A 80 680 1081 HOH HOH . 
K 6 HOH A 81 681 1062 HOH HOH . 
K 6 HOH A 82 682 1037 HOH HOH . 
K 6 HOH A 83 683 1148 HOH HOH . 
K 6 HOH A 84 684 1063 HOH HOH . 
K 6 HOH A 85 685 1005 HOH HOH . 
K 6 HOH A 86 686 1023 HOH HOH . 
K 6 HOH A 87 687 63 HOH HOH . 
K 6 HOH A 88 688 26 HOH HOH . 
K 6 HOH A 89 689 1078 HOH HOH . 
K 6 HOH A 90 690 1015 HOH HOH . 
K 6 HOH A 91 691 1125 HOH HOH . 
K 6 HOH A 92 692 39 HOH HOH . 
K 6 HOH A 93 693 34 HOH HOH . 
K 6 HOH A 94 694 1083 HOH HOH . 
K 6 HOH A 95 695 1014 HOH HOH . 
K 6 HOH A 96 696 1198 HOH HOH . 
K 6 HOH A 97 697 1026 HOH HOH . 
K 6 HOH A 98 698 1035 HOH HOH . 
K 6 HOH A 99 699 1006 HOH HOH . 
K 6 HOH A 100 700 1041 HOH HOH . 
K 6 HOH A 101 701 4 HOH HOH . 
K 6 HOH A 102 702 29 HOH HOH . 
K 6 HOH A 103 703 48 HOH HOH . 
K 6 HOH A 104 704 30 HOH HOH . 
K 6 HOH A 105 705 1106 HOH HOH . 
K 6 HOH A 106 706 1039 HOH HOH . 
K 6 HOH A 107 707 1030 HOH HOH . 
K 6 HOH A 108 708 1077 HOH HOH . 
K 6 HOH A 109 709 1067 HOH HOH . 
K 6 HOH A 110 710 1049 HOH HOH . 
K 6 HOH A 111 711 59 HOH HOH . 
K 6 HOH A 112 712 1013 HOH HOH . 
K 6 HOH A 113 713 1124 HOH HOH . 
K 6 HOH A 114 714 1022 HOH HOH . 
K 6 HOH A 115 715 1042 HOH HOH . 
K 6 HOH A 116 716 1115 HOH HOH . 
K 6 HOH A 117 717 1071 HOH HOH . 
K 6 HOH A 118 718 16 HOH HOH . 
K 6 HOH A 119 719 1191 HOH HOH . 
K 6 HOH A 120 720 1092 HOH HOH . 
K 6 HOH A 121 721 1180 HOH HOH . 
K 6 HOH A 122 722 1010 HOH HOH . 
K 6 HOH A 123 723 5 HOH HOH . 
K 6 HOH A 124 724 19 HOH HOH . 
K 6 HOH A 125 725 66 HOH HOH . 
K 6 HOH A 126 726 1132 HOH HOH . 
K 6 HOH A 127 727 1162 HOH HOH . 
K 6 HOH A 128 728 51 HOH HOH . 
K 6 HOH A 129 729 1129 HOH HOH . 
K 6 HOH A 130 730 42 HOH HOH . 
K 6 HOH A 131 731 1153 HOH HOH . 
K 6 HOH A 132 732 1112 HOH HOH . 
K 6 HOH A 133 733 1152 HOH HOH . 
K 6 HOH A 134 734 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 QL5 . . . J 5 -1.603 -10.807 7.955 1 22.04 ? N1 QL5 509 A 1 
HETATM 2 C C4 QL5 . . . J 5 2.277 -3.571 5.293 1 21.25 ? C4 QL5 509 A 1 
HETATM 3 C C5 QL5 . . . J 5 1.463 -4.662 5.571 1 23.06 ? C5 QL5 509 A 1 
HETATM 4 C C6 QL5 . . . J 5 -0.042 -4.546 5.329 1 21.34 ? C6 QL5 509 A 1 
HETATM 5 C C7 QL5 . . . J 5 2.023 -5.829 6.078 1 20.27 ? C7 QL5 509 A 1 
HETATM 6 C C8 QL5 . . . J 5 0.397 -7.079 7.451 1 22.81 ? C8 QL5 509 A 1 
HETATM 7 C C10 QL5 . . . J 5 -1.339 -8.542 8.587 1 21.06 ? C10 QL5 509 A 1 
HETATM 8 C C13 QL5 . . . J 5 0.028 -9.489 6.866 1 18.95 ? C13 QL5 509 A 1 
HETATM 9 C C1 QL5 . . . J 5 5.724 -4.901 6.204 1 22.45 ? C1 QL5 509 A 1 
HETATM 10 C C2 QL5 . . . J 5 4.216 -4.821 5.983 1 20.98 ? C2 QL5 509 A 1 
HETATM 11 C C3 QL5 . . . J 5 3.645 -3.656 5.5 1 20.68 ? C3 QL5 509 A 1 
HETATM 12 O O1 QL5 . . . J 5 1.245 -6.981 6.344 1 19.4 ? O1 QL5 509 A 1 
HETATM 13 O O2 QL5 . . . J 5 0.24 -6.171 8.207 1 22.39 ? O2 QL5 509 A 1 
HETATM 14 C C9 QL5 . . . J 5 -0.331 -8.405 7.65 1 21.23 ? C9 QL5 509 A 1 
HETATM 15 C C11 QL5 . . . J 5 -1.955 -9.778 8.705 1 22.66 ? C11 QL5 509 A 1 
HETATM 16 C C12 QL5 . . . J 5 -0.637 -10.692 7.064 1 20.69 ? C12 QL5 509 A 1 
HETATM 17 C C14 QL5 . . . J 5 3.401 -5.914 6.272 1 22.41 ? C14 QL5 509 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#