data_7BDB
#
_model_server_result.job_id            ewqOpvBlwC6tOs9H6tKimQ 
_model_server_result.datetime_utc      '2024-11-13 04:49:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bdb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    7BDB 
#
_exptl.entry_id    7BDB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BDB 
_cell.length_a            59.74 
_cell.length_b            73.34 
_cell.length_c            78.45 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BDB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 246 n n 
C1 O1 NAG sing 247 n n 
C1 O5 NAG sing 248 n n 
C1 H1 NAG sing 249 n n 
C2 C3 NAG sing 250 n n 
C2 N2 NAG sing 251 n n 
C2 H2 NAG sing 252 n n 
C3 C4 NAG sing 253 n n 
C3 O3 NAG sing 254 n n 
C3 H3 NAG sing 255 n n 
C4 C5 NAG sing 256 n n 
C4 O4 NAG sing 257 n n 
C4 H4 NAG sing 258 n n 
C5 C6 NAG sing 259 n n 
C5 O5 NAG sing 260 n n 
C5 H5 NAG sing 261 n n 
C6 O6 NAG sing 262 n n 
C6 H61 NAG sing 263 n n 
C6 H62 NAG sing 264 n n 
C7 C8 NAG sing 265 n n 
C7 N2 NAG sing 266 n n 
C7 O7 NAG doub 267 n n 
C8 H81 NAG sing 268 n n 
C8 H82 NAG sing 269 n n 
C8 H83 NAG sing 270 n n 
N2 HN2 NAG sing 271 n n 
O1 HO1 NAG sing 272 n n 
O3 HO3 NAG sing 273 n n 
O4 HO4 NAG sing 274 n n 
O6 HO6 NAG sing 275 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7BDB 
_atom_sites.fract_transf_matrix[1][1]    0.016739 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013635 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012747 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 501 602 SO4 SO4 . 
C 3 NAG A 1 502 1452 NAG NAG . 
D 4 DMS A 1 503 1501 DMS DMS . 
E 2 SO4 A 1 504 8 SO4 SO4 . 
F 2 SO4 A 1 505 10 SO4 SO4 . 
G 5 NW7 A 1 506 1 NW7 LIG . 
H 6 HOH A 1 601 27 HOH HOH . 
H 6 HOH A 2 602 40 HOH HOH . 
H 6 HOH A 3 603 1086 HOH HOH . 
H 6 HOH A 4 604 25 HOH HOH . 
H 6 HOH A 5 605 1118 HOH HOH . 
H 6 HOH A 6 606 23 HOH HOH . 
H 6 HOH A 7 607 1073 HOH HOH . 
H 6 HOH A 8 608 1048 HOH HOH . 
H 6 HOH A 9 609 1031 HOH HOH . 
H 6 HOH A 10 610 1045 HOH HOH . 
H 6 HOH A 11 611 1196 HOH HOH . 
H 6 HOH A 12 612 1003 HOH HOH . 
H 6 HOH A 13 613 1001 HOH HOH . 
H 6 HOH A 14 614 1133 HOH HOH . 
H 6 HOH A 15 615 1008 HOH HOH . 
H 6 HOH A 16 616 1123 HOH HOH . 
H 6 HOH A 17 617 1033 HOH HOH . 
H 6 HOH A 18 618 1047 HOH HOH . 
H 6 HOH A 19 619 1018 HOH HOH . 
H 6 HOH A 20 620 1050 HOH HOH . 
H 6 HOH A 21 621 1091 HOH HOH . 
H 6 HOH A 22 622 1027 HOH HOH . 
H 6 HOH A 23 623 18 HOH HOH . 
H 6 HOH A 24 624 1087 HOH HOH . 
H 6 HOH A 25 625 1082 HOH HOH . 
H 6 HOH A 26 626 1036 HOH HOH . 
H 6 HOH A 27 627 1197 HOH HOH . 
H 6 HOH A 28 628 36 HOH HOH . 
H 6 HOH A 29 629 1004 HOH HOH . 
H 6 HOH A 30 630 1059 HOH HOH . 
H 6 HOH A 31 631 1081 HOH HOH . 
H 6 HOH A 32 632 1046 HOH HOH . 
H 6 HOH A 33 633 1159 HOH HOH . 
H 6 HOH A 34 634 1029 HOH HOH . 
H 6 HOH A 35 635 11 HOH HOH . 
H 6 HOH A 36 636 1007 HOH HOH . 
H 6 HOH A 37 637 22 HOH HOH . 
H 6 HOH A 38 638 1040 HOH HOH . 
H 6 HOH A 39 639 1190 HOH HOH . 
H 6 HOH A 40 640 1051 HOH HOH . 
H 6 HOH A 41 641 1019 HOH HOH . 
H 6 HOH A 42 642 26 HOH HOH . 
H 6 HOH A 43 643 1037 HOH HOH . 
H 6 HOH A 44 644 57 HOH HOH . 
H 6 HOH A 45 645 1058 HOH HOH . 
H 6 HOH A 46 646 1070 HOH HOH . 
H 6 HOH A 47 647 1074 HOH HOH . 
H 6 HOH A 48 648 56 HOH HOH . 
H 6 HOH A 49 649 1043 HOH HOH . 
H 6 HOH A 50 650 7 HOH HOH . 
H 6 HOH A 51 651 1038 HOH HOH . 
H 6 HOH A 52 652 1064 HOH HOH . 
H 6 HOH A 53 653 1012 HOH HOH . 
H 6 HOH A 54 654 1052 HOH HOH . 
H 6 HOH A 55 655 1065 HOH HOH . 
H 6 HOH A 56 656 1016 HOH HOH . 
H 6 HOH A 57 657 1002 HOH HOH . 
H 6 HOH A 58 658 12 HOH HOH . 
H 6 HOH A 59 659 1068 HOH HOH . 
H 6 HOH A 60 660 1109 HOH HOH . 
H 6 HOH A 61 661 1041 HOH HOH . 
H 6 HOH A 62 662 1098 HOH HOH . 
H 6 HOH A 63 663 1011 HOH HOH . 
H 6 HOH A 64 664 1085 HOH HOH . 
H 6 HOH A 65 665 28 HOH HOH . 
H 6 HOH A 66 666 1083 HOH HOH . 
H 6 HOH A 67 667 1149 HOH HOH . 
H 6 HOH A 68 668 50 HOH HOH . 
H 6 HOH A 69 669 1015 HOH HOH . 
H 6 HOH A 70 670 1063 HOH HOH . 
H 6 HOH A 71 671 1062 HOH HOH . 
H 6 HOH A 72 672 1035 HOH HOH . 
H 6 HOH A 73 673 1017 HOH HOH . 
H 6 HOH A 74 674 30 HOH HOH . 
H 6 HOH A 75 675 16 HOH HOH . 
H 6 HOH A 76 676 1114 HOH HOH . 
H 6 HOH A 77 677 1023 HOH HOH . 
H 6 HOH A 78 678 1030 HOH HOH . 
H 6 HOH A 79 679 1078 HOH HOH . 
H 6 HOH A 80 680 29 HOH HOH . 
H 6 HOH A 81 681 1005 HOH HOH . 
H 6 HOH A 82 682 1014 HOH HOH . 
H 6 HOH A 83 683 1026 HOH HOH . 
H 6 HOH A 84 684 1140 HOH HOH . 
H 6 HOH A 85 685 1071 HOH HOH . 
H 6 HOH A 86 686 1039 HOH HOH . 
H 6 HOH A 87 687 1006 HOH HOH . 
H 6 HOH A 88 688 1148 HOH HOH . 
H 6 HOH A 89 689 35 HOH HOH . 
H 6 HOH A 90 690 1020 HOH HOH . 
H 6 HOH A 91 691 1067 HOH HOH . 
H 6 HOH A 92 692 1077 HOH HOH . 
H 6 HOH A 93 693 1010 HOH HOH . 
H 6 HOH A 94 694 4 HOH HOH . 
H 6 HOH A 95 695 1145 HOH HOH . 
H 6 HOH A 96 696 1022 HOH HOH . 
H 6 HOH A 97 697 1191 HOH HOH . 
H 6 HOH A 98 698 1080 HOH HOH . 
H 6 HOH A 99 699 1093 HOH HOH . 
H 6 HOH A 100 700 1013 HOH HOH . 
H 6 HOH A 101 701 1057 HOH HOH . 
H 6 HOH A 102 702 34 HOH HOH . 
H 6 HOH A 103 703 1049 HOH HOH . 
H 6 HOH A 104 704 1042 HOH HOH . 
H 6 HOH A 105 705 1092 HOH HOH . 
H 6 HOH A 106 706 1079 HOH HOH . 
H 6 HOH A 107 707 1180 HOH HOH . 
H 6 HOH A 108 708 19 HOH HOH . 
H 6 HOH A 109 709 5 HOH HOH . 
H 6 HOH A 110 710 1153 HOH HOH . 
H 6 HOH A 111 711 42 HOH HOH . 
H 6 HOH A 112 712 33 HOH HOH . 
H 6 HOH A 113 713 1112 HOH HOH . 
H 6 HOH A 114 714 1152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -4.134 21.41 -1.273 1 47.41 ? C1 NAG 502 A 1 
HETATM 2 C C2 NAG . . . C 3 -5.206 22.116 -2.093 1 54.7 ? C2 NAG 502 A 1 
HETATM 3 C C3 NAG . . . C 3 -6.552 22.036 -1.383 1 52.82 ? C3 NAG 502 A 1 
HETATM 4 C C4 NAG . . . C 3 -6.888 20.594 -1.024 1 51 ? C4 NAG 502 A 1 
HETATM 5 C C5 NAG . . . C 3 -5.734 19.959 -0.255 1 47.84 ? C5 NAG 502 A 1 
HETATM 6 C C6 NAG . . . C 3 -5.937 18.487 0.026 1 50.89 ? C6 NAG 502 A 1 
HETATM 7 C C7 NAG . . . C 3 -4.793 24.036 -3.568 1 64.44 ? C7 NAG 502 A 1 
HETATM 8 C C8 NAG . . . C 3 -4.407 25.484 -3.64 1 60.4 ? C8 NAG 502 A 1 
HETATM 9 N N2 NAG . . . C 3 -4.846 23.504 -2.342 1 58.7 ? N2 NAG 502 A 1 
HETATM 10 O O3 NAG . . . C 3 -7.543 22.574 -2.248 1 59.58 ? O3 NAG 502 A 1 
HETATM 11 O O4 NAG . . . C 3 -8.059 20.559 -0.216 1 49.19 ? O4 NAG 502 A 1 
HETATM 12 O O5 NAG . . . C 3 -4.529 20.069 -1.023 1 50.2 ? O5 NAG 502 A 1 
HETATM 13 O O6 NAG . . . C 3 -5.926 17.716 -1.17 1 50.37 ? O6 NAG 502 A 1 
HETATM 14 O O7 NAG . . . C 3 -5.042 23.376 -4.576 1 66.15 ? O7 NAG 502 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#