data_7BDE # _model_server_result.job_id qIvi0oIPIjKZzPt43MFYhg _model_server_result.datetime_utc '2024-11-05 00:18:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7BDE # _exptl.entry_id 7BDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BDE _cell.length_a 49.251 _cell.length_b 49.251 _cell.length_c 124.409 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 85.305234 41.469667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7BDE _atom_sites.fract_transf_matrix[1][1] 0.020304 _atom_sites.fract_transf_matrix[1][2] 0.011723 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TEQ A 1 201 1 TEQ LIG . C 3 GOL A 1 202 1 GOL GOL . D 4 DMS A 1 203 1 DMS DMS . E 5 HOH A 1 301 39 HOH HOH . E 5 HOH A 2 302 88 HOH HOH . E 5 HOH A 3 303 22 HOH HOH . E 5 HOH A 4 304 40 HOH HOH . E 5 HOH A 5 305 87 HOH HOH . E 5 HOH A 6 306 51 HOH HOH . E 5 HOH A 7 307 42 HOH HOH . E 5 HOH A 8 308 48 HOH HOH . E 5 HOH A 9 309 41 HOH HOH . E 5 HOH A 10 310 43 HOH HOH . E 5 HOH A 11 311 65 HOH HOH . E 5 HOH A 12 312 25 HOH HOH . E 5 HOH A 13 313 67 HOH HOH . E 5 HOH A 14 314 46 HOH HOH . E 5 HOH A 15 315 10 HOH HOH . E 5 HOH A 16 316 9 HOH HOH . E 5 HOH A 17 317 74 HOH HOH . E 5 HOH A 18 318 53 HOH HOH . E 5 HOH A 19 319 2 HOH HOH . E 5 HOH A 20 320 44 HOH HOH . E 5 HOH A 21 321 83 HOH HOH . E 5 HOH A 22 322 29 HOH HOH . E 5 HOH A 23 323 18 HOH HOH . E 5 HOH A 24 324 1 HOH HOH . E 5 HOH A 25 325 6 HOH HOH . E 5 HOH A 26 326 23 HOH HOH . E 5 HOH A 27 327 27 HOH HOH . E 5 HOH A 28 328 26 HOH HOH . E 5 HOH A 29 329 69 HOH HOH . E 5 HOH A 30 330 17 HOH HOH . E 5 HOH A 31 331 59 HOH HOH . E 5 HOH A 32 332 57 HOH HOH . E 5 HOH A 33 333 71 HOH HOH . E 5 HOH A 34 334 66 HOH HOH . E 5 HOH A 35 335 50 HOH HOH . E 5 HOH A 36 336 3 HOH HOH . E 5 HOH A 37 337 21 HOH HOH . E 5 HOH A 38 338 14 HOH HOH . E 5 HOH A 39 339 64 HOH HOH . E 5 HOH A 40 340 4 HOH HOH . E 5 HOH A 41 341 68 HOH HOH . E 5 HOH A 42 342 12 HOH HOH . E 5 HOH A 43 343 89 HOH HOH . E 5 HOH A 44 344 60 HOH HOH . E 5 HOH A 45 345 31 HOH HOH . E 5 HOH A 46 346 7 HOH HOH . E 5 HOH A 47 347 45 HOH HOH . E 5 HOH A 48 348 73 HOH HOH . E 5 HOH A 49 349 61 HOH HOH . E 5 HOH A 50 350 11 HOH HOH . E 5 HOH A 51 351 20 HOH HOH . E 5 HOH A 52 352 36 HOH HOH . E 5 HOH A 53 353 91 HOH HOH . E 5 HOH A 54 354 93 HOH HOH . E 5 HOH A 55 355 16 HOH HOH . E 5 HOH A 56 356 35 HOH HOH . E 5 HOH A 57 357 32 HOH HOH . E 5 HOH A 58 358 33 HOH HOH . E 5 HOH A 59 359 72 HOH HOH . E 5 HOH A 60 360 5 HOH HOH . E 5 HOH A 61 361 84 HOH HOH . E 5 HOH A 62 362 30 HOH HOH . E 5 HOH A 63 363 55 HOH HOH . E 5 HOH A 64 364 13 HOH HOH . E 5 HOH A 65 365 70 HOH HOH . E 5 HOH A 66 366 47 HOH HOH . E 5 HOH A 67 367 90 HOH HOH . E 5 HOH A 68 368 28 HOH HOH . E 5 HOH A 69 369 58 HOH HOH . E 5 HOH A 70 370 85 HOH HOH . E 5 HOH A 71 371 79 HOH HOH . E 5 HOH A 72 372 19 HOH HOH . E 5 HOH A 73 373 63 HOH HOH . E 5 HOH A 74 374 62 HOH HOH . E 5 HOH A 75 375 24 HOH HOH . E 5 HOH A 76 376 86 HOH HOH . E 5 HOH A 77 377 49 HOH HOH . E 5 HOH A 78 378 15 HOH HOH . E 5 HOH A 79 379 52 HOH HOH . E 5 HOH A 80 380 38 HOH HOH . E 5 HOH A 81 381 82 HOH HOH . E 5 HOH A 82 382 80 HOH HOH . E 5 HOH A 83 383 8 HOH HOH . E 5 HOH A 84 384 37 HOH HOH . E 5 HOH A 85 385 81 HOH HOH . E 5 HOH A 86 386 94 HOH HOH . E 5 HOH A 87 387 75 HOH HOH . E 5 HOH A 88 388 76 HOH HOH . E 5 HOH A 89 389 56 HOH HOH . E 5 HOH A 90 390 78 HOH HOH . E 5 HOH A 91 391 92 HOH HOH . E 5 HOH A 92 392 54 HOH HOH . E 5 HOH A 93 393 34 HOH HOH . E 5 HOH A 94 394 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 -4.599 25.93 -0.417 1 98.96 ? S DMS 203 A 1 HETATM 2 O O DMS . . . D 4 -4.776 25.525 1.024 1 93.88 ? O DMS 203 A 1 HETATM 3 C C1 DMS . . . D 4 -5.757 27.25 -0.713 1 86.17 ? C1 DMS 203 A 1 HETATM 4 C C2 DMS . . . D 4 -3.094 26.864 -0.476 1 84.28 ? C2 DMS 203 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #