data_7BDF # _model_server_result.job_id 5ED3S6Pfuqkeu0AeJpCcmA _model_server_result.datetime_utc '2024-11-13 05:35:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7BDF # _exptl.entry_id 7BDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BDF _cell.length_a 59.823 _cell.length_b 73.452 _cell.length_c 78.588 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7BDF _atom_sites.fract_transf_matrix[1][1] 0.016716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 DMS A 1 503 1501 DMS DMS . E 2 SO4 A 1 504 8 SO4 SO4 . F 2 SO4 A 1 505 10 SO4 SO4 . G 5 TEH A 1 506 1 TEH LIG . H 6 HOH A 1 601 1086 HOH HOH . H 6 HOH A 2 602 1031 HOH HOH . H 6 HOH A 3 603 25 HOH HOH . H 6 HOH A 4 604 1118 HOH HOH . H 6 HOH A 5 605 1123 HOH HOH . H 6 HOH A 6 606 1047 HOH HOH . H 6 HOH A 7 607 1050 HOH HOH . H 6 HOH A 8 608 23 HOH HOH . H 6 HOH A 9 609 1159 HOH HOH . H 6 HOH A 10 610 1196 HOH HOH . H 6 HOH A 11 611 1133 HOH HOH . H 6 HOH A 12 612 17 HOH HOH . H 6 HOH A 13 613 1001 HOH HOH . H 6 HOH A 14 614 1008 HOH HOH . H 6 HOH A 15 615 1003 HOH HOH . H 6 HOH A 16 616 1027 HOH HOH . H 6 HOH A 17 617 40 HOH HOH . H 6 HOH A 18 618 1045 HOH HOH . H 6 HOH A 19 619 1036 HOH HOH . H 6 HOH A 20 620 1033 HOH HOH . H 6 HOH A 21 621 1018 HOH HOH . H 6 HOH A 22 622 1048 HOH HOH . H 6 HOH A 23 623 1091 HOH HOH . H 6 HOH A 24 624 1059 HOH HOH . H 6 HOH A 25 625 1154 HOH HOH . H 6 HOH A 26 626 1029 HOH HOH . H 6 HOH A 27 627 1046 HOH HOH . H 6 HOH A 28 628 13 HOH HOH . H 6 HOH A 29 629 36 HOH HOH . H 6 HOH A 30 630 1019 HOH HOH . H 6 HOH A 31 631 18 HOH HOH . H 6 HOH A 32 632 1058 HOH HOH . H 6 HOH A 33 633 1040 HOH HOH . H 6 HOH A 34 634 1149 HOH HOH . H 6 HOH A 35 635 1197 HOH HOH . H 6 HOH A 36 636 1073 HOH HOH . H 6 HOH A 37 637 1070 HOH HOH . H 6 HOH A 38 638 1016 HOH HOH . H 6 HOH A 39 639 1190 HOH HOH . H 6 HOH A 40 640 1052 HOH HOH . H 6 HOH A 41 641 1004 HOH HOH . H 6 HOH A 42 642 57 HOH HOH . H 6 HOH A 43 643 1145 HOH HOH . H 6 HOH A 44 644 1125 HOH HOH . H 6 HOH A 45 645 1085 HOH HOH . H 6 HOH A 46 646 21 HOH HOH . H 6 HOH A 47 647 1064 HOH HOH . H 6 HOH A 48 648 11 HOH HOH . H 6 HOH A 49 649 22 HOH HOH . H 6 HOH A 50 650 12 HOH HOH . H 6 HOH A 51 651 28 HOH HOH . H 6 HOH A 52 652 1120 HOH HOH . H 6 HOH A 53 653 1007 HOH HOH . H 6 HOH A 54 654 1038 HOH HOH . H 6 HOH A 55 655 48 HOH HOH . H 6 HOH A 56 656 1051 HOH HOH . H 6 HOH A 57 657 1012 HOH HOH . H 6 HOH A 58 658 1098 HOH HOH . H 6 HOH A 59 659 56 HOH HOH . H 6 HOH A 60 660 1037 HOH HOH . H 6 HOH A 61 661 1011 HOH HOH . H 6 HOH A 62 662 1030 HOH HOH . H 6 HOH A 63 663 1063 HOH HOH . H 6 HOH A 64 664 29 HOH HOH . H 6 HOH A 65 665 26 HOH HOH . H 6 HOH A 66 666 1017 HOH HOH . H 6 HOH A 67 667 1065 HOH HOH . H 6 HOH A 68 668 7 HOH HOH . H 6 HOH A 69 669 1002 HOH HOH . H 6 HOH A 70 670 1083 HOH HOH . H 6 HOH A 71 671 1043 HOH HOH . H 6 HOH A 72 672 1062 HOH HOH . H 6 HOH A 73 673 1023 HOH HOH . H 6 HOH A 74 674 16 HOH HOH . H 6 HOH A 75 675 1068 HOH HOH . H 6 HOH A 76 676 1057 HOH HOH . H 6 HOH A 77 677 1041 HOH HOH . H 6 HOH A 78 678 1026 HOH HOH . H 6 HOH A 79 679 50 HOH HOH . H 6 HOH A 80 680 1078 HOH HOH . H 6 HOH A 81 681 1005 HOH HOH . H 6 HOH A 82 682 1020 HOH HOH . H 6 HOH A 83 683 1081 HOH HOH . H 6 HOH A 84 684 1039 HOH HOH . H 6 HOH A 85 685 1114 HOH HOH . H 6 HOH A 86 686 1006 HOH HOH . H 6 HOH A 87 687 1106 HOH HOH . H 6 HOH A 88 688 1015 HOH HOH . H 6 HOH A 89 689 1010 HOH HOH . H 6 HOH A 90 690 1074 HOH HOH . H 6 HOH A 91 691 1035 HOH HOH . H 6 HOH A 92 692 1054 HOH HOH . H 6 HOH A 93 693 34 HOH HOH . H 6 HOH A 94 694 4 HOH HOH . H 6 HOH A 95 695 30 HOH HOH . H 6 HOH A 96 696 1014 HOH HOH . H 6 HOH A 97 697 1013 HOH HOH . H 6 HOH A 98 698 6 HOH HOH . H 6 HOH A 99 699 1077 HOH HOH . H 6 HOH A 100 700 1067 HOH HOH . H 6 HOH A 101 701 1042 HOH HOH . H 6 HOH A 102 702 1191 HOH HOH . H 6 HOH A 103 703 1140 HOH HOH . H 6 HOH A 104 704 1142 HOH HOH . H 6 HOH A 105 705 1049 HOH HOH . H 6 HOH A 106 706 1022 HOH HOH . H 6 HOH A 107 707 1079 HOH HOH . H 6 HOH A 108 708 1198 HOH HOH . H 6 HOH A 109 709 1115 HOH HOH . H 6 HOH A 110 710 35 HOH HOH . H 6 HOH A 111 711 1155 HOH HOH . H 6 HOH A 112 712 1180 HOH HOH . H 6 HOH A 113 713 19 HOH HOH . H 6 HOH A 114 714 5 HOH HOH . H 6 HOH A 115 715 1162 HOH HOH . H 6 HOH A 116 716 51 HOH HOH . H 6 HOH A 117 717 1153 HOH HOH . H 6 HOH A 118 718 1129 HOH HOH . H 6 HOH A 119 719 42 HOH HOH . H 6 HOH A 120 720 33 HOH HOH . H 6 HOH A 121 721 1152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 -4.112 21.489 -1.285 1 42.34 ? C1 NAG 502 A 1 HETATM 2 C C2 NAG . . . C 3 -5.171 22.138 -2.167 1 51.41 ? C2 NAG 502 A 1 HETATM 3 C C3 NAG . . . C 3 -6.541 22.042 -1.504 1 48.8 ? C3 NAG 502 A 1 HETATM 4 C C4 NAG . . . C 3 -6.853 20.603 -1.115 1 48.03 ? C4 NAG 502 A 1 HETATM 5 C C5 NAG . . . C 3 -5.712 20.012 -0.293 1 44.99 ? C5 NAG 502 A 1 HETATM 6 C C6 NAG . . . C 3 -5.885 18.536 -0.012 1 51.4 ? C6 NAG 502 A 1 HETATM 7 C C7 NAG . . . C 3 -4.641 23.99 -3.69 1 60.01 ? C7 NAG 502 A 1 HETATM 8 C C8 NAG . . . C 3 -4.318 25.451 -3.799 1 62.3 ? C8 NAG 502 A 1 HETATM 9 N N2 NAG . . . C 3 -4.841 23.526 -2.452 1 54.62 ? N2 NAG 502 A 1 HETATM 10 O O3 NAG . . . C 3 -7.518 22.525 -2.417 1 50.49 ? O3 NAG 502 A 1 HETATM 11 O O4 NAG . . . C 3 -8.047 20.562 -0.342 1 45.78 ? O4 NAG 502 A 1 HETATM 12 O O5 NAG . . . C 3 -4.478 20.147 -1.009 1 48.59 ? O5 NAG 502 A 1 HETATM 13 O O6 NAG . . . C 3 -5.895 17.772 -1.211 1 48.43 ? O6 NAG 502 A 1 HETATM 14 O O7 NAG . . . C 3 -4.714 23.263 -4.677 1 60.31 ? O7 NAG 502 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #